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1 <tool id="validate_temperature_data" name="Validate temperature data" version="1.0.0">
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2 <description>for insect phenology model</description>
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3 <command detect_errors="exit_code"><![CDATA[
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4 #set temperature_data_type = $temperature_data_type_cond.temperature_data_type
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5 python '$__tool_directory__/validate_temperature_data.py'
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6 --data_type $temperature_data_type
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7 #if str($temperature_data_type) == "normals":
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8 --input_normals '$temperature_data_type_cond.input_normals'
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9 #else:
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10 --input_actuals '$temperature_data_type_cond.input_actuals'
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11 #end if
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12 --output '$output']]></command>
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13 <inputs>
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14 <conditional name="temperature_data_type_cond">
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15 <param name="temperature_data_type" type="select" label="Validate 30 year normals or daily actuals temperature data?">
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16 <option value="normals" selected="true">30 year normals</option>
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17 <option value="actuals">daily actuals</option>
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18 </param>
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19 <when value="normals">
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20 <param name="input_normals" type="data" format="csv" label="30 year normals CSV file">
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21 <validator type="expression" message="30 year normals temperature data must have 10 columns and 366 rows">value is not None and value.metadata.columns==10 and value.metadata.data_lines==366</validator>
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22 </param>
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23 </when>
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24 <when value="actuals">
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25 <param name="input_actuals" type="data" format="csv" label="Daily actuals CSV file">
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26 <validator type="expression" message="Daily actuals temperature data must have 6 columns">value is not None and value.metadata.columns==6</validator>
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27 </param>
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28 </when>
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29 </conditional>
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30 </inputs>
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31 <outputs>
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32 <data name="output" format="csv"/>
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33 </outputs>
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34 <tests>
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35 <test>
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36 <param name="input_normals" value="30_year_normals.csv" ftype="csv"/>
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37 <output name="output" file="30_year_normals.csv" ftype="csv"/>
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38 </test>
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39 <test>
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40 <param name="temperature_data_type" value="actuals"/>
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41 <param name="input_actuals" value="daily_actuals.csv" ftype="csv"/>
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42 <output name="output" file="daily_actuals.csv" ftype="csv"/>
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43 </test>
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44 </tests>
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45 <help>
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46 **What it does**
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47
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48 Validates either a 30 year normals temeprature dataset or a daily actuals temperature dataset which are used
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49 as input to the insect phenology model tool. The tool will output the input file if it is valid.
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50
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51 -----
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52
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53 **30 year normals columns**
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54
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55 * stationid
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56 * latitude
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57 * longitude
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58 * elev_m
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59 * name
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60 * st
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61 * mmdd
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62 * doy
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63 * tmin
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64 * tmax
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65
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66 **Daily actuals columns**
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67
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68 * LATITUDE
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69 * LONGITUDE
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70 * DATE
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71 * DOY
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72 * TMIN
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73 * TMAX
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74 </help>
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75 <citations>
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76 </citations>
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77 </tool>
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