Mercurial > repos > greg > vsnp_add_zero_coverage

comparison vsnp_add_zero_coverage.xml @ 7:127a00fcd4a8 draft

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author greg
date Mon, 02 Aug 2021 15:07:29 +0000
parents bb6cc994707d
children fdfcdc9548ec
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6:bb6cc994707d 7:127a00fcd4a8
2 <description></description> 2 <description></description>
3 <macros> 3 <macros>
4 <import>macros.xml</import> 4 <import>macros.xml</import>
5 </macros> 5 </macros>
6 <requirements> 6 <requirements>
7 <requirement type="package" version="3.0.7">openpyxl</requirement> 7 <expand macro="biopython_requirement"/>
8 <requirement type="package" version="1.79">biopython</requirement> 8 <expand macro="openpyxl_requirement"/>
9 <requirement type="package" version="1.3.0">pandas</requirement> 9 <expand macro="pandas_requirement"/>
10 <requirement type="package" version="0.16.0.1">pysam</requirement> 10 <requirement type="package" version="0.16.0.1">pysam</requirement>
11 </requirements> 11 </requirements>
12 <command detect_errors="exit_code"><![CDATA[ 12 <command detect_errors="exit_code"><![CDATA[
13 #import re 13 #import re
14 14
83 83
84 **Required Options** 84 **Required Options**
85 85
86 * **Choose the source for the reference genome** - select "locally cached" if the reference associated with the BAM and VCF files is available within the Galaxy environment or "from history" to select the reference from the current history. 86 * **Choose the source for the reference genome** - select "locally cached" if the reference associated with the BAM and VCF files is available within the Galaxy environment or "from history" to select the reference from the current history.
87 </help> 87 </help>
88 <expand macro="citations" /> 88 <expand macro="citations"/>
89 </tool> 89 </tool>
90 90