Mercurial > repos > greg > vsnp_add_zero_coverage

diff vsnp_add_zero_coverage.xml @ 12:4f68ac34612d draft

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"planemo upload for repository https://github.com/gregvonkuster/galaxy_tools/tree/master/tools/sequence_analysis/vsnp/vsnp_add_zero_coverage commit 12290f30f18c10e0e74994b39bdee35ee3d6a726"
author greg
date Mon, 15 Nov 2021 21:36:44 +0000
parents fdfcdc9548ec
children
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line diff
--- a/vsnp_add_zero_coverage.xml	Fri Nov 12 16:09:39 2021 +0000
+++ b/vsnp_add_zero_coverage.xml	Mon Nov 15 21:36:44 2021 +0000
@@ -58,15 +58,31 @@
             <param name="vcf_input" value="vcf_input.vcf" ftype="vcf" dbkey="89"/>
             <param name="reference_source" value="history"/>
             <param name="reference" value="NC_002945v4.fasta" ftype="fasta"/>
-            <output name="output_vcf" value="output_vcf.vcf" ftype="vcf" compare="contains"/>
-            <output name="output_metrics" file="output_metrics.tabular" ftype="tabular"/>
+            <output name="output_vcf" ftype="vcf">
+                <assert_contents>
+                    <has_size value="259726"/>
+                </assert_contents>
+            </output>
+            <output name="output_metrics" ftype="tabular">
+                <assert_contents>
+                    <has_size value="109"/>
+                </assert_contents>
+            </output>
         </test>
         <test expect_num_outputs="2">
             <param name="bam_input" value="bam_input.bam" ftype="bam" dbkey="89"/>
             <param name="vcf_input" value="vcf_input.vcf" ftype="vcf" dbkey="89"/>
             <param name="reference_source" value="cached"/>
-            <output name="output_vcf" value="output_vcf.vcf" ftype="vcf" compare="contains"/>
-            <output name="output_metrics" file="output_metrics.tabular" ftype="tabular" compare="contains"/>
+            <output name="output_vcf" ftype="vcf">
+                <assert_contents>
+                    <has_size value="259726"/>
+                </assert_contents>
+            </output>
+            <output name="output_metrics" ftype="tabular">
+                <assert_contents>
+                    <has_size value="109"/>
+                </assert_contents>
+            </output>
         </test>
     </tests>
     <help>