annotate test-data/input_zc_vcf.vcf @ 4:da20c7c76d06 draft

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author greg
date Thu, 17 Jun 2021 13:23:41 +0000
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1 ##fileformat=VCFv4.2
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2 ##fileDate=20190125
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3 ##source=freeBayes v1.2.0-dirty
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4 ##reference=/scratch/analysis_staging/a_script/vcf_test_files_sra_downloaded_2019-01-23/SRR1791698/NC_002945v4.fasta
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5 ##contig=<ID=NC_002945.4,length=4349904>
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6 ##phasing=none
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7 ##commandline="freebayes -E -1 -e 1 -u --strict-vcf -f /scratch/analysis_staging/a_script/vcf_test_files_sra_downloaded_2019-01-23/SRR1791698/NC_002945v4.fasta /scratch/analysis_staging/a_script/vcf_test_files_sra_downloaded_2019-01-23/SRR1791698/SRR1791698-nodup.bam --region NC_002945.4:0-100000
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8 ##filter="QUAL > 20
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9 #CHROM POS ID REF ALT QUAL FILTER INFO FORMAT SRR1791698
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