Mercurial > repos > greg > vsnp_get_snps

comparison test-data/input_zc_vcf.vcf @ 4:da20c7c76d06 draft

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author greg
date Thu, 17 Jun 2021 13:23:41 +0000
parents ee4ef1fc23c6
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3:14285a94fb13 4:da20c7c76d06
4 ##reference=/scratch/analysis_staging/a_script/vcf_test_files_sra_downloaded_2019-01-23/SRR1791698/NC_002945v4.fasta 4 ##reference=/scratch/analysis_staging/a_script/vcf_test_files_sra_downloaded_2019-01-23/SRR1791698/NC_002945v4.fasta
5 ##contig=<ID=NC_002945.4,length=4349904> 5 ##contig=<ID=NC_002945.4,length=4349904>
6 ##phasing=none 6 ##phasing=none
7 ##commandline="freebayes -E -1 -e 1 -u --strict-vcf -f /scratch/analysis_staging/a_script/vcf_test_files_sra_downloaded_2019-01-23/SRR1791698/NC_002945v4.fasta /scratch/analysis_staging/a_script/vcf_test_files_sra_downloaded_2019-01-23/SRR1791698/SRR1791698-nodup.bam --region NC_002945.4:0-100000 7 ##commandline="freebayes -E -1 -e 1 -u --strict-vcf -f /scratch/analysis_staging/a_script/vcf_test_files_sra_downloaded_2019-01-23/SRR1791698/NC_002945v4.fasta /scratch/analysis_staging/a_script/vcf_test_files_sra_downloaded_2019-01-23/SRR1791698/SRR1791698-nodup.bam --region NC_002945.4:0-100000
8 ##filter="QUAL > 20 8 ##filter="QUAL > 20
9 ##INFO=<ID=NS,Number=1,Type=Integer,Description="Number of samples with data">
10 ##INFO=<ID=DP,Number=1,Type=Integer,Description="Total read depth at the locus">
11 ##INFO=<ID=DPB,Number=1,Type=Float,Description="Total read depth per bp at the locus; bases in reads overlapping / bases in haplotype">
12 ##INFO=<ID=AC,Number=A,Type=Integer,Description="Total number of alternate alleles in called genotypes">
13 ##INFO=<ID=AN,Number=1,Type=Integer,Description="Total number of alleles in called genotypes">
14 ##INFO=<ID=AF,Number=A,Type=Float,Description="Estimated allele frequency in the range (0,1]">
15 ##INFO=<ID=RO,Number=1,Type=Integer,Description="Count of full observations of the reference haplotype.">
16 ##INFO=<ID=AO,Number=A,Type=Integer,Description="Count of full observations of this alternate haplotype.">
17 ##INFO=<ID=PRO,Number=1,Type=Float,Description="Reference allele observation count, with partial observations recorded fractionally">
18 ##INFO=<ID=PAO,Number=A,Type=Float,Description="Alternate allele observations, with partial observations recorded fractionally">
19 ##INFO=<ID=QR,Number=1,Type=Integer,Description="Reference allele quality sum in phred">
20 ##INFO=<ID=QA,Number=A,Type=Integer,Description="Alternate allele quality sum in phred">
21 ##INFO=<ID=PQR,Number=1,Type=Float,Description="Reference allele quality sum in phred for partial observations">
22 ##INFO=<ID=PQA,Number=A,Type=Float,Description="Alternate allele quality sum in phred for partial observations">
23 ##INFO=<ID=SRF,Number=1,Type=Integer,Description="Number of reference observations on the forward strand">
24 ##INFO=<ID=SRR,Number=1,Type=Integer,Description="Number of reference observations on the reverse strand">
25 ##INFO=<ID=SAF,Number=A,Type=Integer,Description="Number of alternate observations on the forward strand">
26 ##INFO=<ID=SAR,Number=A,Type=Integer,Description="Number of alternate observations on the reverse strand">
27 ##INFO=<ID=SRP,Number=1,Type=Float,Description="Strand balance probability for the reference allele: Phred-scaled upper-bounds estimate of the probability of observing the deviation between SRF and SRR given E(SRF/SRR) ~ 0.5, derived using Hoeffding's inequality">
28 ##INFO=<ID=SAP,Number=A,Type=Float,Description="Strand balance probability for the alternate allele: Phred-scaled upper-bounds estimate of the probability of observing the deviation between SAF and SAR given E(SAF/SAR) ~ 0.5, derived using Hoeffding's inequality">
29 ##INFO=<ID=AB,Number=A,Type=Float,Description="Allele balance at heterozygous sites: a number between 0 and 1 representing the ratio of reads showing the reference allele to all reads, considering only reads from individuals called as heterozygous">
30 ##INFO=<ID=ABP,Number=A,Type=Float,Description="Allele balance probability at heterozygous sites: Phred-scaled upper-bounds estimate of the probability of observing the deviation between ABR and ABA given E(ABR/ABA) ~ 0.5, derived using Hoeffding's inequality">
31 ##INFO=<ID=RUN,Number=A,Type=Integer,Description="Run length: the number of consecutive repeats of the alternate allele in the reference genome">
32 ##INFO=<ID=RPP,Number=A,Type=Float,Description="Read Placement Probability: Phred-scaled upper-bounds estimate of the probability of observing the deviation between RPL and RPR given E(RPL/RPR) ~ 0.5, derived using Hoeffding's inequality">
33 ##INFO=<ID=RPPR,Number=1,Type=Float,Description="Read Placement Probability for reference observations: Phred-scaled upper-bounds estimate of the probability of observing the deviation between RPL and RPR given E(RPL/RPR) ~ 0.5, derived using Hoeffding's inequality">
34 ##INFO=<ID=RPL,Number=A,Type=Float,Description="Reads Placed Left: number of reads supporting the alternate balanced to the left (5') of the alternate allele">
35 ##INFO=<ID=RPR,Number=A,Type=Float,Description="Reads Placed Right: number of reads supporting the alternate balanced to the right (3') of the alternate allele">
36 ##INFO=<ID=EPP,Number=A,Type=Float,Description="End Placement Probability: Phred-scaled upper-bounds estimate of the probability of observing the deviation between EL and ER given E(EL/ER) ~ 0.5, derived using Hoeffding's inequality">
37 ##INFO=<ID=EPPR,Number=1,Type=Float,Description="End Placement Probability for reference observations: Phred-scaled upper-bounds estimate of the probability of observing the deviation between EL and ER given E(EL/ER) ~ 0.5, derived using Hoeffding's inequality">
38 ##INFO=<ID=DPRA,Number=A,Type=Float,Description="Alternate allele depth ratio. Ratio between depth in samples with each called alternate allele and those without.">
39 ##INFO=<ID=ODDS,Number=1,Type=Float,Description="The log odds ratio of the best genotype combination to the second-best.">
40 ##INFO=<ID=GTI,Number=1,Type=Integer,Description="Number of genotyping iterations required to reach convergence or bailout.">
41 ##INFO=<ID=TYPE,Number=A,Type=String,Description="The type of allele, either snp, mnp, ins, del, or complex.">
42 ##INFO=<ID=CIGAR,Number=A,Type=String,Description="The extended CIGAR representation of each alternate allele, with the exception that '=' is replaced by 'M' to ease VCF parsing. Note that INDEL alleles do not have the first matched base (which is provided by default, per the spec) referred to by the CIGAR.">
43 ##INFO=<ID=NUMALT,Number=1,Type=Integer,Description="Number of unique non-reference alleles in called genotypes at this position.">
44 ##INFO=<ID=MEANALT,Number=A,Type=Float,Description="Mean number of unique non-reference allele observations per sample with the corresponding alternate alleles.">
45 ##INFO=<ID=LEN,Number=A,Type=Integer,Description="allele length">
46 ##INFO=<ID=MQM,Number=A,Type=Float,Description="Mean mapping quality of observed alternate alleles">
47 ##INFO=<ID=MQMR,Number=1,Type=Float,Description="Mean mapping quality of observed reference alleles">
48 ##INFO=<ID=PAIRED,Number=A,Type=Float,Description="Proportion of observed alternate alleles which are supported by properly paired read fragments">
49 ##INFO=<ID=PAIREDR,Number=1,Type=Float,Description="Proportion of observed reference alleles which are supported by properly paired read fragments">
50 ##INFO=<ID=MIN_DP,Number=1,Type=Integer,Description="Minimum depth in gVCF output block.">
51 ##INFO=<ID=END,Number=1,Type=Integer,Description="Last position (inclusive) in gVCF output record.">
52 ##INFO=<ID=technology.ILLUMINA,Number=A,Type=Float,Description="Fraction of observations supporting the alternate observed in reads from ILLUMINA">
53 ##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype">
54 ##FORMAT=<ID=GQ,Number=1,Type=Integer,Description="Genotype Quality, the Phred-scaled marginal (or unconditional) probability of the called genotype">
55 ##FORMAT=<ID=GL,Number=G,Type=Float,Description="Genotype Likelihood, log10-scaled likelihoods of the data given the called genotype for each possible genotype generated from the reference and alternate alleles given the sample ploidy">
56 ##FORMAT=<ID=DP,Number=1,Type=Integer,Description="Read Depth">
57 ##FORMAT=<ID=AD,Number=R,Type=Integer,Description="Number of observation for each allele">
58 ##FORMAT=<ID=RO,Number=1,Type=Integer,Description="Reference allele observation count">
59 ##FORMAT=<ID=QR,Number=1,Type=Integer,Description="Sum of quality of the reference observations">
60 ##FORMAT=<ID=AO,Number=A,Type=Integer,Description="Alternate allele observation count">
61 ##FORMAT=<ID=QA,Number=A,Type=Integer,Description="Sum of quality of the alternate observations">
62 ##FORMAT=<ID=MIN_DP,Number=1,Type=Integer,Description="Minimum depth in gVCF output block.">
63 #CHROM POS ID REF ALT QUAL FILTER INFO FORMAT SRR1791698 9 #CHROM POS ID REF ALT QUAL FILTER INFO FORMAT SRR1791698
64 NC_002945.4 1057 . A G 7624.7 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=262;CIGAR=1X;DP=265;DPB=265;DPRA=0;EPP=4.20378;EPPR=5.18177;GTI=0;LEN=1;MEANALT=2;MQ=60;MQMR=60;NS=1;NUMALT=1;ODDS=363.221;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=8526;QR=12;RO=1;RPL=140;RPP=5.69563;RPPR=5.18177;RPR=122;RUN=1;SAF=139;SAP=5.13204;SAR=123;SRF=0;SRP=5.18177;SRR=1;TYPE=snp;technology.ILLUMINA=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:265:1,262:1:12:262:8526:-766.088,-78.0909,0 10 NC_002945.4 1057 . A G 7624.7 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=262;CIGAR=1X;DP=265;DPB=265;DPRA=0;EPP=4.20378;EPPR=5.18177;GTI=0;LEN=1;MEANALT=2;MQ=60;MQMR=60;NS=1;NUMALT=1;ODDS=363.221;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=8526;QR=12;RO=1;RPL=140;RPP=5.69563;RPPR=5.18177;RPR=122;RUN=1;SAF=139;SAP=5.13204;SAR=123;SRF=0;SRP=5.18177;SRR=1;TYPE=snp;technology.ILLUMINA=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:265:1,262:1:12:262:8526:-766.088,-78.0909,0
65 NC_002945.4 4480 . T C 4142.4 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=144;CIGAR=1X;DP=145;DPB=145;DPRA=0;EPP=3.07062;EPPR=0;GTI=0;LEN=1;MEANALT=2;MQ=60;MQMR=0;NS=1;NUMALT=1;ODDS=204.232;PAIRED=0.993056;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=4647;QR=0;RO=0;RPL=79;RPP=5.96592;RPPR=0;RPR=65;RUN=1;SAF=72;SAP=3.0103;SAR=72;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:145:0,144:0:0:144:4647:-418.074,-43.3483,0 11 NC_002945.4 4480 . T C 4142.4 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=144;CIGAR=1X;DP=145;DPB=145;DPRA=0;EPP=3.07062;EPPR=0;GTI=0;LEN=1;MEANALT=2;MQ=60;MQMR=0;NS=1;NUMALT=1;ODDS=204.232;PAIRED=0.993056;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=4647;QR=0;RO=0;RPL=79;RPP=5.96592;RPPR=0;RPR=65;RUN=1;SAF=72;SAP=3.0103;SAR=72;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:145:0,144:0:0:144:4647:-418.074,-43.3483,0
66 NC_002945.4 8741 . T C 5252.19 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=184;CIGAR=1X;DP=186;DPB=186;DPRA=0;EPP=16.6528;EPPR=0;GTI=0;LEN=1;MEANALT=2;MQ=60;MQMR=0;NS=1;NUMALT=1;ODDS=259.683;PAIRED=0.98913;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=5901;QR=0;RO=0;RPL=81;RPP=8.72222;RPPR=0;RPR=103;RUN=1;SAF=98;SAP=4.70971;SAR=86;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:186:0,184:0:0:184:5901:-531.016,-55.3895,0 12 NC_002945.4 8741 . T C 5252.19 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=184;CIGAR=1X;DP=186;DPB=186;DPRA=0;EPP=16.6528;EPPR=0;GTI=0;LEN=1;MEANALT=2;MQ=60;MQMR=0;NS=1;NUMALT=1;ODDS=259.683;PAIRED=0.98913;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=5901;QR=0;RO=0;RPL=81;RPP=8.72222;RPPR=0;RPR=103;RUN=1;SAF=98;SAP=4.70971;SAR=86;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:186:0,184:0:0:184:5901:-531.016,-55.3895,0
67 NC_002945.4 29061 . C T 4714.63 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=163;CIGAR=1X;DP=164;DPB=164;DPRA=0;EPP=3.1302;EPPR=0;GTI=0;LEN=1;MEANALT=2;MQ=60;MQMR=0;NS=1;NUMALT=1;ODDS=230.571;PAIRED=0.969325;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=5311;QR=0;RO=0;RPL=59;RPP=29.9872;RPPR=0;RPR=104;RUN=1;SAF=83;SAP=3.1302;SAR=80;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:164:0,163:0:0:163:5311:-477.817,-49.0679,0 13 NC_002945.4 29061 . C T 4714.63 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=163;CIGAR=1X;DP=164;DPB=164;DPRA=0;EPP=3.1302;EPPR=0;GTI=0;LEN=1;MEANALT=2;MQ=60;MQMR=0;NS=1;NUMALT=1;ODDS=230.571;PAIRED=0.969325;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=5311;QR=0;RO=0;RPL=59;RPP=29.9872;RPPR=0;RPR=104;RUN=1;SAF=83;SAP=3.1302;SAR=80;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:164:0,163:0:0:163:5311:-477.817,-49.0679,0
113 NC_002945.4 29516 . N . . . . GT ./. 59 NC_002945.4 29516 . N . . . . GT ./.
114 NC_002945.4 29517 . N . . . . GT ./. 60 NC_002945.4 29517 . N . . . . GT ./.
115 NC_002945.4 29518 . N . . . . GT ./. 61 NC_002945.4 29518 . N . . . . GT ./.
116 NC_002945.4 29519 . N . . . . GT ./. 62 NC_002945.4 29519 . N . . . . GT ./.
117 NC_002945.4 29520 . N . . . . GT ./. 63 NC_002945.4 29520 . N . . . . GT ./.
118 NC_002945.4 29521 . N . . . . GT ./.
119 NC_002945.4 29522 . N . . . . GT ./.
120 NC_002945.4 29523 . N . . . . GT ./.
121 NC_002945.4 29524 . N . . . . GT ./.
122 NC_002945.4 29525 . N . . . . GT ./.
123 NC_002945.4 29526 . N . . . . GT ./.
124 NC_002945.4 29527 . N . . . . GT ./.
125 NC_002945.4 29528 . N . . . . GT ./.
126 NC_002945.4 29529 . N . . . . GT ./.
127 NC_002945.4 29530 . N . . . . GT ./.
128 NC_002945.4 29531 . N . . . . GT ./.
129 NC_002945.4 29532 . N . . . . GT ./.
130 NC_002945.4 29533 . N . . . . GT ./.
131 NC_002945.4 29534 . N . . . . GT ./.
132 NC_002945.4 29535 . N . . . . GT ./.
133 NC_002945.4 29536 . N . . . . GT ./.
134 NC_002945.4 29537 . N . . . . GT ./.
135 NC_002945.4 29538 . N . . . . GT ./.
136 NC_002945.4 29539 . N . . . . GT ./.
137 NC_002945.4 29540 . N . . . . GT ./.
138 NC_002945.4 29541 . N . . . . GT ./.
139 NC_002945.4 29542 . N . . . . GT ./.
140 NC_002945.4 29543 . N . . . . GT ./.
141 NC_002945.4 29544 . N . . . . GT ./.
142 NC_002945.4 29545 . N . . . . GT ./.
143 NC_002945.4 29546 . N . . . . GT ./.
144 NC_002945.4 29547 . N . . . . GT ./.
145 NC_002945.4 29548 . N . . . . GT ./.
146 NC_002945.4 29549 . N . . . . GT ./.
147 NC_002945.4 29550 . N . . . . GT ./.
148 NC_002945.4 29551 . N . . . . GT ./.
149 NC_002945.4 29552 . N . . . . GT ./.
150 NC_002945.4 29553 . N . . . . GT ./.
151 NC_002945.4 29554 . N . . . . GT ./.
152 NC_002945.4 29555 . N . . . . GT ./.
153 NC_002945.4 29556 . N . . . . GT ./.
154 NC_002945.4 29557 . N . . . . GT ./.
155 NC_002945.4 29558 . N . . . . GT ./.
156 NC_002945.4 29559 . N . . . . GT ./.
157 NC_002945.4 29560 . N . . . . GT ./.
158 NC_002945.4 29561 . N . . . . GT ./.
159 NC_002945.4 29562 . N . . . . GT ./.
160 NC_002945.4 29563 . N . . . . GT ./.
161 NC_002945.4 29564 . N . . . . GT ./.
162 NC_002945.4 29565 . N . . . . GT ./.
163 NC_002945.4 29566 . N . . . . GT ./.
164 NC_002945.4 29567 . N . . . . GT ./.
165 NC_002945.4 29568 . N . . . . GT ./.
166 NC_002945.4 29569 . N . . . . GT ./.
167 NC_002945.4 29570 . N . . . . GT ./.
168 NC_002945.4 29571 . N . . . . GT ./.
169 NC_002945.4 29572 . N . . . . GT ./.
170 NC_002945.4 29573 . N . . . . GT ./.
171 NC_002945.4 29574 . N . . . . GT ./.
172 NC_002945.4 29575 . N . . . . GT ./.
173 NC_002945.4 29576 . N . . . . GT ./.
174 NC_002945.4 29577 . N . . . . GT ./.
175 NC_002945.4 29578 . N . . . . GT ./.
176 NC_002945.4 29579 . N . . . . GT ./.
177 NC_002945.4 29580 . N . . . . GT ./.
178 NC_002945.4 29581 . N . . . . GT ./.
179 NC_002945.4 29582 . N . . . . GT ./.
180 NC_002945.4 29583 . N . . . . GT ./.
181 NC_002945.4 29584 . N . . . . GT ./.
182 NC_002945.4 29585 . N . . . . GT ./.
183 NC_002945.4 29586 . N . . . . GT ./.
184 NC_002945.4 29587 . N . . . . GT ./.
185 NC_002945.4 29588 . N . . . . GT ./.
186 NC_002945.4 29589 . N . . . . GT ./.
187 NC_002945.4 29590 . N . . . . GT ./.
188 NC_002945.4 29591 . N . . . . GT ./.
189 NC_002945.4 29592 . N . . . . GT ./.
190 NC_002945.4 29593 . N . . . . GT ./.
191 NC_002945.4 29594 . N . . . . GT ./.
192 NC_002945.4 29595 . N . . . . GT ./.
193 NC_002945.4 29596 . N . . . . GT ./.
194 NC_002945.4 29597 . N . . . . GT ./.
195 NC_002945.4 29598 . N . . . . GT ./.
196 NC_002945.4 29599 . N . . . . GT ./.
197 NC_002945.4 29600 . N . . . . GT ./.
198 NC_002945.4 29601 . N . . . . GT ./.
199 NC_002945.4 29602 . N . . . . GT ./.
200 NC_002945.4 29603 . N . . . . GT ./.
201 NC_002945.4 29604 . N . . . . GT ./.
202 NC_002945.4 29605 . N . . . . GT ./.
203 NC_002945.4 29606 . N . . . . GT ./.
204 NC_002945.4 29607 . N . . . . GT ./.
205 NC_002945.4 29608 . N . . . . GT ./.
206 NC_002945.4 29609 . N . . . . GT ./.
207 NC_002945.4 29610 . N . . . . GT ./.
208 NC_002945.4 29611 . N . . . . GT ./.
209 NC_002945.4 29612 . N . . . . GT ./.
210 NC_002945.4 29613 . N . . . . GT ./.
211 NC_002945.4 29614 . N . . . . GT ./.
212 NC_002945.4 29615 . N . . . . GT ./.
213 NC_002945.4 29616 . N . . . . GT ./.
214 NC_002945.4 29617 . N . . . . GT ./.
215 NC_002945.4 29618 . N . . . . GT ./.
216 NC_002945.4 29619 . N . . . . GT ./.
217 NC_002945.4 29620 . N . . . . GT ./.
218 NC_002945.4 29621 . N . . . . GT ./.
219 NC_002945.4 29622 . N . . . . GT ./.
220 NC_002945.4 29623 . N . . . . GT ./.
221 NC_002945.4 29624 . N . . . . GT ./.
222 NC_002945.4 29625 . N . . . . GT ./.
223 NC_002945.4 29626 . N . . . . GT ./.
224 NC_002945.4 29627 . N . . . . GT ./.
225 NC_002945.4 29628 . N . . . . GT ./.
226 NC_002945.4 29629 . N . . . . GT ./.
227 NC_002945.4 29630 . N . . . . GT ./.
228 NC_002945.4 29631 . N . . . . GT ./.
229 NC_002945.4 29632 . N . . . . GT ./.
230 NC_002945.4 29633 . N . . . . GT ./.
231 NC_002945.4 29634 . N . . . . GT ./.
232 NC_002945.4 29635 . N . . . . GT ./.
233 NC_002945.4 29636 . N . . . . GT ./.
234 NC_002945.4 29637 . N . . . . GT ./.
235 NC_002945.4 29638 . N . . . . GT ./.
236 NC_002945.4 29639 . N . . . . GT ./.
237 NC_002945.4 29640 . N . . . . GT ./.
238 NC_002945.4 29641 . N . . . . GT ./.
239 NC_002945.4 29642 . N . . . . GT ./.
240 NC_002945.4 29643 . N . . . . GT ./.
241 NC_002945.4 29644 . N . . . . GT ./.
242 NC_002945.4 29645 . N . . . . GT ./.
243 NC_002945.4 29646 . N . . . . GT ./.
244 NC_002945.4 29647 . N . . . . GT ./.
245 NC_002945.4 29648 . N . . . . GT ./.
246 NC_002945.4 29649 . N . . . . GT ./.
247 NC_002945.4 29650 . N . . . . GT ./.
248 NC_002945.4 29651 . N . . . . GT ./.
249 NC_002945.4 29652 . N . . . . GT ./.
250 NC_002945.4 29653 . N . . . . GT ./.
251 NC_002945.4 29654 . N . . . . GT ./.
252 NC_002945.4 29655 . N . . . . GT ./.
253 NC_002945.4 29656 . N . . . . GT ./.
254 NC_002945.4 29657 . N . . . . GT ./.
255 NC_002945.4 29658 . N . . . . GT ./.
256 NC_002945.4 29659 . N . . . . GT ./.
257 NC_002945.4 29660 . N . . . . GT ./.
258 NC_002945.4 29661 . N . . . . GT ./.
259 NC_002945.4 29662 . N . . . . GT ./.
260 NC_002945.4 29663 . N . . . . GT ./.
261 NC_002945.4 29664 . N . . . . GT ./.
262 NC_002945.4 29665 . N . . . . GT ./.
263 NC_002945.4 29666 . N . . . . GT ./.
264 NC_002945.4 29667 . N . . . . GT ./.
265 NC_002945.4 29668 . N . . . . GT ./.
266 NC_002945.4 29669 . N . . . . GT ./.
267 NC_002945.4 29670 . N . . . . GT ./.
268 NC_002945.4 29671 . N . . . . GT ./.
269 NC_002945.4 29672 . N . . . . GT ./.
270 NC_002945.4 29673 . N . . . . GT ./.
271 NC_002945.4 29674 . N . . . . GT ./.
272 NC_002945.4 29675 . N . . . . GT ./.
273 NC_002945.4 29676 . N . . . . GT ./.
274 NC_002945.4 29677 . N . . . . GT ./.
275 NC_002945.4 29678 . N . . . . GT ./.
276 NC_002945.4 29679 . N . . . . GT ./.
277 NC_002945.4 29680 . N . . . . GT ./.
278 NC_002945.4 29681 . N . . . . GT ./.
279 NC_002945.4 29682 . N . . . . GT ./.
280 NC_002945.4 29683 . N . . . . GT ./.
281 NC_002945.4 29684 . N . . . . GT ./.
282 NC_002945.4 29685 . N . . . . GT ./.
283 NC_002945.4 29686 . N . . . . GT ./.
284 NC_002945.4 29687 . N . . . . GT ./.
285 NC_002945.4 29688 . N . . . . GT ./.
286 NC_002945.4 29689 . N . . . . GT ./.
287 NC_002945.4 29690 . N . . . . GT ./.
288 NC_002945.4 29691 . N . . . . GT ./.
289 NC_002945.4 29692 . N . . . . GT ./.
290 NC_002945.4 29693 . N . . . . GT ./.
291 NC_002945.4 29694 . N . . . . GT ./.
292 NC_002945.4 29695 . N . . . . GT ./.
293 NC_002945.4 29696 . N . . . . GT ./.
294 NC_002945.4 29697 . N . . . . GT ./.
295 NC_002945.4 29698 . N . . . . GT ./.
296 NC_002945.4 29699 . N . . . . GT ./.
297 NC_002945.4 29700 . N . . . . GT ./.
298 NC_002945.4 29701 . N . . . . GT ./.
299 NC_002945.4 29702 . N . . . . GT ./.
300 NC_002945.4 29703 . N . . . . GT ./.
301 NC_002945.4 29704 . N . . . . GT ./.
302 NC_002945.4 29705 . N . . . . GT ./.
303 NC_002945.4 29706 . N . . . . GT ./.
304 NC_002945.4 29707 . N . . . . GT ./.
305 NC_002945.4 29708 . N . . . . GT ./.
306 NC_002945.4 29709 . N . . . . GT ./.
307 NC_002945.4 29710 . N . . . . GT ./.
308 NC_002945.4 29711 . N . . . . GT ./.
309 NC_002945.4 29712 . N . . . . GT ./.
310 NC_002945.4 29713 . N . . . . GT ./.
311 NC_002945.4 29714 . N . . . . GT ./.
312 NC_002945.4 29715 . N . . . . GT ./.
313 NC_002945.4 29716 . N . . . . GT ./.
314 NC_002945.4 29717 . N . . . . GT ./.
315 NC_002945.4 29718 . N . . . . GT ./.
316 NC_002945.4 29719 . N . . . . GT ./.
317 NC_002945.4 29720 . N . . . . GT ./.
318 NC_002945.4 29721 . N . . . . GT ./.
319 NC_002945.4 29722 . N . . . . GT ./.
320 NC_002945.4 29723 . N . . . . GT ./.
321 NC_002945.4 29724 . N . . . . GT ./.
322 NC_002945.4 29725 . N . . . . GT ./.
323 NC_002945.4 29726 . N . . . . GT ./.
324 NC_002945.4 29727 . N . . . . GT ./.
325 NC_002945.4 29728 . N . . . . GT ./.
326 NC_002945.4 29729 . N . . . . GT ./.
327 NC_002945.4 29730 . N . . . . GT ./.
328 NC_002945.4 29731 . N . . . . GT ./.
329 NC_002945.4 29732 . N . . . . GT ./.
330 NC_002945.4 29733 . N . . . . GT ./.
331 NC_002945.4 29734 . N . . . . GT ./.
332 NC_002945.4 29735 . N . . . . GT ./.
333 NC_002945.4 29736 . N . . . . GT ./.
334 NC_002945.4 29737 . N . . . . GT ./.
335 NC_002945.4 29738 . N . . . . GT ./.
336 NC_002945.4 29739 . N . . . . GT ./.
337 NC_002945.4 29740 . N . . . . GT ./.
338 NC_002945.4 29741 . N . . . . GT ./.
339 NC_002945.4 29742 . N . . . . GT ./.
340 NC_002945.4 29743 . N . . . . GT ./.
341 NC_002945.4 29744 . N . . . . GT ./.
342 NC_002945.4 29745 . N . . . . GT ./.
343 NC_002945.4 29746 . N . . . . GT ./.
344 NC_002945.4 29747 . N . . . . GT ./.
345 NC_002945.4 29748 . N . . . . GT ./.
346 NC_002945.4 29749 . N . . . . GT ./.
347 NC_002945.4 29750 . N . . . . GT ./.
348 NC_002945.4 29751 . N . . . . GT ./.
349 NC_002945.4 29752 . N . . . . GT ./.
350 NC_002945.4 29753 . N . . . . GT ./.
351 NC_002945.4 29754 . N . . . . GT ./.
352 NC_002945.4 29755 . N . . . . GT ./.
353 NC_002945.4 29756 . N . . . . GT ./.
354 NC_002945.4 29757 . N . . . . GT ./.
355 NC_002945.4 29758 . N . . . . GT ./.
356 NC_002945.4 29759 . N . . . . GT ./.
357 NC_002945.4 29760 . N . . . . GT ./.
358 NC_002945.4 29761 . N . . . . GT ./.
359 NC_002945.4 29762 . N . . . . GT ./.
360 NC_002945.4 29763 . N . . . . GT ./.
361 NC_002945.4 29764 . N . . . . GT ./.
362 NC_002945.4 29765 . N . . . . GT ./.
363 NC_002945.4 29766 . N . . . . GT ./.
364 NC_002945.4 29767 . N . . . . GT ./.
365 NC_002945.4 29768 . N . . . . GT ./.
366 NC_002945.4 29769 . N . . . . GT ./.
367 NC_002945.4 29770 . N . . . . GT ./.
368 NC_002945.4 29771 . N . . . . GT ./.
369 NC_002945.4 29772 . N . . . . GT ./.
370 NC_002945.4 29773 . N . . . . GT ./.
371 NC_002945.4 29774 . N . . . . GT ./.
372 NC_002945.4 29775 . N . . . . GT ./.
373 NC_002945.4 29776 . N . . . . GT ./.
374 NC_002945.4 29777 . N . . . . GT ./.
375 NC_002945.4 29778 . N . . . . GT ./.
376 NC_002945.4 29779 . N . . . . GT ./.
377 NC_002945.4 29780 . N . . . . GT ./.
378 NC_002945.4 29781 . N . . . . GT ./.
379 NC_002945.4 29782 . N . . . . GT ./.
380 NC_002945.4 29783 . N . . . . GT ./.
381 NC_002945.4 29784 . N . . . . GT ./.
382 NC_002945.4 29785 . N . . . . GT ./.
383 NC_002945.4 29786 . N . . . . GT ./.
384 NC_002945.4 29787 . N . . . . GT ./.
385 NC_002945.4 29788 . N . . . . GT ./.
386 NC_002945.4 29789 . N . . . . GT ./.
387 NC_002945.4 29790 . N . . . . GT ./.
388 NC_002945.4 29791 . N . . . . GT ./.
389 NC_002945.4 29792 . N . . . . GT ./.
390 NC_002945.4 29793 . N . . . . GT ./.
391 NC_002945.4 29794 . N . . . . GT ./.
392 NC_002945.4 29795 . N . . . . GT ./.
393 NC_002945.4 29796 . N . . . . GT ./.
394 NC_002945.4 29797 . N . . . . GT ./.
395 NC_002945.4 29798 . N . . . . GT ./.
396 NC_002945.4 29799 . N . . . . GT ./.
397 NC_002945.4 29800 . N . . . . GT ./.
398 NC_002945.4 29801 . N . . . . GT ./.
399 NC_002945.4 29802 . N . . . . GT ./.
400 NC_002945.4 29803 . N . . . . GT ./.
401 NC_002945.4 29804 . N . . . . GT ./.
402 NC_002945.4 29805 . N . . . . GT ./.
403 NC_002945.4 29806 . N . . . . GT ./.
404 NC_002945.4 29807 . N . . . . GT ./.
405 NC_002945.4 29808 . N . . . . GT ./.
406 NC_002945.4 29809 . N . . . . GT ./.
407 NC_002945.4 29810 . N . . . . GT ./.
408 NC_002945.4 29811 . N . . . . GT ./.
409 NC_002945.4 29812 . N . . . . GT ./.
410 NC_002945.4 29813 . N . . . . GT ./.
411 NC_002945.4 29814 . N . . . . GT ./.
412 NC_002945.4 29815 . N . . . . GT ./.
413 NC_002945.4 29816 . N . . . . GT ./.
414 NC_002945.4 29817 . N . . . . GT ./.
415 NC_002945.4 29818 . N . . . . GT ./.
416 NC_002945.4 29819 . N . . . . GT ./.
417 NC_002945.4 29820 . N . . . . GT ./.
418 NC_002945.4 29821 . N . . . . GT ./.
419 NC_002945.4 29822 . N . . . . GT ./.
420 NC_002945.4 29823 . N . . . . GT ./.
421 NC_002945.4 29824 . N . . . . GT ./.
422 NC_002945.4 29825 . N . . . . GT ./.
423 NC_002945.4 29826 . N . . . . GT ./.
424 NC_002945.4 29827 . N . . . . GT ./.
425 NC_002945.4 29828 . N . . . . GT ./.
426 NC_002945.4 29829 . N . . . . GT ./.
427 NC_002945.4 29830 . N . . . . GT ./.
428 NC_002945.4 29831 . N . . . . GT ./.
429 NC_002945.4 29832 . N . . . . GT ./.
430 NC_002945.4 29833 . N . . . . GT ./.
431 NC_002945.4 29834 . N . . . . GT ./.
432 NC_002945.4 29835 . N . . . . GT ./.
433 NC_002945.4 29836 . N . . . . GT ./.
434 NC_002945.4 29837 . N . . . . GT ./.
435 NC_002945.4 29838 . N . . . . GT ./.
436 NC_002945.4 29839 . N . . . . GT ./.
437 NC_002945.4 29840 . N . . . . GT ./.
438 NC_002945.4 29841 . N . . . . GT ./.
439 NC_002945.4 29842 . N . . . . GT ./.
440 NC_002945.4 29843 . N . . . . GT ./.
441 NC_002945.4 29844 . N . . . . GT ./.
442 NC_002945.4 29845 . N . . . . GT ./.
443 NC_002945.4 29846 . N . . . . GT ./.
444 NC_002945.4 29847 . N . . . . GT ./.
445 NC_002945.4 29848 . N . . . . GT ./.
446 NC_002945.4 29849 . N . . . . GT ./.
447 NC_002945.4 29850 . N . . . . GT ./.
448 NC_002945.4 29851 . N . . . . GT ./.
449 NC_002945.4 29852 . N . . . . GT ./.
450 NC_002945.4 29853 . N . . . . GT ./.
451 NC_002945.4 29854 . N . . . . GT ./.
452 NC_002945.4 29855 . N . . . . GT ./.
453 NC_002945.4 29856 . N . . . . GT ./.
454 NC_002945.4 29857 . N . . . . GT ./.
455 NC_002945.4 29858 . N . . . . GT ./.
456 NC_002945.4 29859 . N . . . . GT ./.
457 NC_002945.4 29860 . N . . . . GT ./.
458 NC_002945.4 29861 . N . . . . GT ./.
459 NC_002945.4 29862 . N . . . . GT ./.
460 NC_002945.4 29863 . N . . . . GT ./.
461 NC_002945.4 29864 . N . . . . GT ./.
462 NC_002945.4 29865 . N . . . . GT ./.
463 NC_002945.4 29866 . N . . . . GT ./.
464 NC_002945.4 29867 . N . . . . GT ./.
465 NC_002945.4 29868 . N . . . . GT ./.
466 NC_002945.4 29869 . N . . . . GT ./.
467 NC_002945.4 29870 . N . . . . GT ./.
468 NC_002945.4 29871 . N . . . . GT ./.
469 NC_002945.4 29872 . N . . . . GT ./.
470 NC_002945.4 29873 . N . . . . GT ./.
471 NC_002945.4 29874 . N . . . . GT ./.
472 NC_002945.4 29875 . N . . . . GT ./.
473 NC_002945.4 29876 . N . . . . GT ./.
474 NC_002945.4 29877 . N . . . . GT ./.
475 NC_002945.4 29878 . N . . . . GT ./.
476 NC_002945.4 29879 . N . . . . GT ./.
477 NC_002945.4 29880 . N . . . . GT ./.
478 NC_002945.4 29881 . N . . . . GT ./.
479 NC_002945.4 29882 . N . . . . GT ./.
480 NC_002945.4 29883 . N . . . . GT ./.
481 NC_002945.4 29884 . N . . . . GT ./.
482 NC_002945.4 29885 . N . . . . GT ./.
483 NC_002945.4 29886 . N . . . . GT ./.
484 NC_002945.4 29887 . N . . . . GT ./.
485 NC_002945.4 29888 . N . . . . GT ./.
486 NC_002945.4 29889 . N . . . . GT ./.
487 NC_002945.4 29890 . N . . . . GT ./.
488 NC_002945.4 29891 . N . . . . GT ./.
489 NC_002945.4 29892 . N . . . . GT ./.
490 NC_002945.4 29893 . N . . . . GT ./.
491 NC_002945.4 29894 . N . . . . GT ./.
492 NC_002945.4 29895 . N . . . . GT ./.
493 NC_002945.4 29896 . N . . . . GT ./.
494 NC_002945.4 29897 . N . . . . GT ./.
495 NC_002945.4 29898 . N . . . . GT ./.
496 NC_002945.4 29899 . N . . . . GT ./.
497 NC_002945.4 29900 . N . . . . GT ./.
498 NC_002945.4 29901 . N . . . . GT ./.
499 NC_002945.4 29902 . N . . . . GT ./.
500 NC_002945.4 29903 . N . . . . GT ./.
501 NC_002945.4 29904 . N . . . . GT ./.
502 NC_002945.4 29905 . N . . . . GT ./.
503 NC_002945.4 29906 . N . . . . GT ./.
504 NC_002945.4 29907 . N . . . . GT ./.
505 NC_002945.4 29908 . N . . . . GT ./.
506 NC_002945.4 29909 . N . . . . GT ./.
507 NC_002945.4 29910 . N . . . . GT ./.
508 NC_002945.4 29911 . N . . . . GT ./.
509 NC_002945.4 29912 . N . . . . GT ./.
510 NC_002945.4 29913 . N . . . . GT ./.
511 NC_002945.4 29914 . N . . . . GT ./.
512 NC_002945.4 29915 . N . . . . GT ./.
513 NC_002945.4 29916 . N . . . . GT ./.
514 NC_002945.4 29917 . N . . . . GT ./.
515 NC_002945.4 29918 . N . . . . GT ./.
516 NC_002945.4 29919 . N . . . . GT ./.
517 NC_002945.4 29920 . N . . . . GT ./.
518 NC_002945.4 29921 . N . . . . GT ./.
519 NC_002945.4 29922 . N . . . . GT ./.
520 NC_002945.4 29923 . N . . . . GT ./.
521 NC_002945.4 29924 . N . . . . GT ./.
522 NC_002945.4 29925 . N . . . . GT ./.
523 NC_002945.4 29926 . N . . . . GT ./.
524 NC_002945.4 29927 . N . . . . GT ./.
525 NC_002945.4 29928 . N . . . . GT ./.
526 NC_002945.4 29929 . N . . . . GT ./.
527 NC_002945.4 29930 . N . . . . GT ./.
528 NC_002945.4 29931 . N . . . . GT ./.
529 NC_002945.4 29932 . N . . . . GT ./.
530 NC_002945.4 29933 . N . . . . GT ./.
531 NC_002945.4 29934 . N . . . . GT ./.
532 NC_002945.4 29935 . N . . . . GT ./.
533 NC_002945.4 29936 . N . . . . GT ./.
534 NC_002945.4 29937 . N . . . . GT ./.
535 NC_002945.4 29938 . N . . . . GT ./.
536 NC_002945.4 29939 . N . . . . GT ./.
537 NC_002945.4 29940 . N . . . . GT ./.
538 NC_002945.4 29941 . N . . . . GT ./.
539 NC_002945.4 29942 . N . . . . GT ./.
540 NC_002945.4 29943 . N . . . . GT ./.
541 NC_002945.4 29944 . N . . . . GT ./.
542 NC_002945.4 29945 . N . . . . GT ./.
543 NC_002945.4 29946 . N . . . . GT ./.
544 NC_002945.4 29947 . N . . . . GT ./.
545 NC_002945.4 29948 . N . . . . GT ./.
546 NC_002945.4 29949 . N . . . . GT ./.
547 NC_002945.4 29950 . N . . . . GT ./.
548 NC_002945.4 29951 . N . . . . GT ./.
549 NC_002945.4 29952 . N . . . . GT ./.
550 NC_002945.4 29953 . N . . . . GT ./.
551 NC_002945.4 29954 . N . . . . GT ./.
552 NC_002945.4 29955 . N . . . . GT ./.
553 NC_002945.4 29956 . N . . . . GT ./.
554 NC_002945.4 29957 . N . . . . GT ./.
555 NC_002945.4 29958 . N . . . . GT ./.
556 NC_002945.4 29959 . N . . . . GT ./.
557 NC_002945.4 29960 . N . . . . GT ./.
558 NC_002945.4 29961 . N . . . . GT ./.
559 NC_002945.4 29962 . N . . . . GT ./.
560 NC_002945.4 29963 . N . . . . GT ./.
561 NC_002945.4 29964 . N . . . . GT ./.
562 NC_002945.4 29965 . N . . . . GT ./.
563 NC_002945.4 29966 . N . . . . GT ./.
564 NC_002945.4 29967 . N . . . . GT ./.
565 NC_002945.4 29968 . N . . . . GT ./.
566 NC_002945.4 29969 . N . . . . GT ./.
567 NC_002945.4 29970 . N . . . . GT ./.
568 NC_002945.4 29971 . N . . . . GT ./.
569 NC_002945.4 29972 . N . . . . GT ./.
570 NC_002945.4 29973 . N . . . . GT ./.
571 NC_002945.4 29974 . N . . . . GT ./.
572 NC_002945.4 29975 . N . . . . GT ./.
573 NC_002945.4 29976 . N . . . . GT ./.
574 NC_002945.4 29977 . N . . . . GT ./.
575 NC_002945.4 29978 . N . . . . GT ./.
576 NC_002945.4 29979 . N . . . . GT ./.
577 NC_002945.4 29980 . N . . . . GT ./.
578 NC_002945.4 29981 . N . . . . GT ./.
579 NC_002945.4 29982 . N . . . . GT ./.
580 NC_002945.4 29983 . N . . . . GT ./.
581 NC_002945.4 29984 . N . . . . GT ./.
582 NC_002945.4 29985 . N . . . . GT ./.
583 NC_002945.4 29986 . N . . . . GT ./.
584 NC_002945.4 29987 . N . . . . GT ./.
585 NC_002945.4 29988 . N . . . . GT ./.
586 NC_002945.4 29989 . N . . . . GT ./.
587 NC_002945.4 29990 . N . . . . GT ./.
588 NC_002945.4 29991 . N . . . . GT ./.
589 NC_002945.4 29992 . N . . . . GT ./.
590 NC_002945.4 29993 . N . . . . GT ./.
591 NC_002945.4 29994 . N . . . . GT ./.
592 NC_002945.4 29995 . N . . . . GT ./.
593 NC_002945.4 29996 . N . . . . GT ./.
594 NC_002945.4 29997 . N . . . . GT ./.
595 NC_002945.4 29998 . N . . . . GT ./.
596 NC_002945.4 29999 . N . . . . GT ./.
597 NC_002945.4 30000 . N . . . . GT ./.
598 NC_002945.4 30001 . N . . . . GT ./.
599 NC_002945.4 30002 . N . . . . GT ./.
600 NC_002945.4 30003 . N . . . . GT ./.
601 NC_002945.4 30004 . N . . . . GT ./.
602 NC_002945.4 30005 . N . . . . GT ./.
603 NC_002945.4 30006 . N . . . . GT ./.
604 NC_002945.4 30007 . N . . . . GT ./.
605 NC_002945.4 30008 . N . . . . GT ./.
606 NC_002945.4 30009 . N . . . . GT ./.
607 NC_002945.4 30010 . N . . . . GT ./.
608 NC_002945.4 30011 . N . . . . GT ./.
609 NC_002945.4 30012 . N . . . . GT ./.
610 NC_002945.4 30013 . N . . . . GT ./.
611 NC_002945.4 30014 . N . . . . GT ./.
612 NC_002945.4 30015 . N . . . . GT ./.
613 NC_002945.4 30016 . N . . . . GT ./.
614 NC_002945.4 30017 . N . . . . GT ./.
615 NC_002945.4 30018 . N . . . . GT ./.
616 NC_002945.4 30019 . N . . . . GT ./.
617 NC_002945.4 30020 . N . . . . GT ./.
618 NC_002945.4 30021 . N . . . . GT ./.
619 NC_002945.4 30022 . N . . . . GT ./.
620 NC_002945.4 30023 . N . . . . GT ./.
621 NC_002945.4 30024 . N . . . . GT ./.
622 NC_002945.4 30025 . N . . . . GT ./.
623 NC_002945.4 30026 . N . . . . GT ./.
624 NC_002945.4 30027 . N . . . . GT ./.
625 NC_002945.4 30028 . N . . . . GT ./.
626 NC_002945.4 30029 . N . . . . GT ./.
627 NC_002945.4 30030 . N . . . . GT ./.
628 NC_002945.4 30031 . N . . . . GT ./.
629 NC_002945.4 30032 . N . . . . GT ./.
630 NC_002945.4 30033 . N . . . . GT ./.
631 NC_002945.4 30034 . N . . . . GT ./.
632 NC_002945.4 30035 . N . . . . GT ./.
633 NC_002945.4 30036 . N . . . . GT ./.
634 NC_002945.4 30037 . N . . . . GT ./.
635 NC_002945.4 30038 . N . . . . GT ./.
636 NC_002945.4 30039 . N . . . . GT ./.
637 NC_002945.4 30040 . N . . . . GT ./.
638 NC_002945.4 30041 . N . . . . GT ./.
639 NC_002945.4 30042 . N . . . . GT ./.
640 NC_002945.4 30043 . N . . . . GT ./.
641 NC_002945.4 30044 . N . . . . GT ./.
642 NC_002945.4 30045 . N . . . . GT ./.
643 NC_002945.4 30046 . N . . . . GT ./.
644 NC_002945.4 30047 . N . . . . GT ./.
645 NC_002945.4 30048 . N . . . . GT ./.
646 NC_002945.4 30049 . N . . . . GT ./.
647 NC_002945.4 30050 . N . . . . GT ./.
648 NC_002945.4 30051 . N . . . . GT ./.
649 NC_002945.4 30052 . N . . . . GT ./.
650 NC_002945.4 30053 . N . . . . GT ./.
651 NC_002945.4 30054 . N . . . . GT ./.
652 NC_002945.4 30055 . N . . . . GT ./.
653 NC_002945.4 30056 . N . . . . GT ./.
654 NC_002945.4 30057 . N . . . . GT ./.
655 NC_002945.4 30058 . N . . . . GT ./.
656 NC_002945.4 30059 . N . . . . GT ./.
657 NC_002945.4 30060 . N . . . . GT ./.
658 NC_002945.4 30061 . N . . . . GT ./.
659 NC_002945.4 30062 . N . . . . GT ./.
660 NC_002945.4 30063 . N . . . . GT ./.
661 NC_002945.4 30064 . N . . . . GT ./.
662 NC_002945.4 30065 . N . . . . GT ./.
663 NC_002945.4 30066 . N . . . . GT ./.
664 NC_002945.4 30067 . N . . . . GT ./.
665 NC_002945.4 30068 . N . . . . GT ./.
666 NC_002945.4 30069 . N . . . . GT ./.
667 NC_002945.4 30070 . N . . . . GT ./.
668 NC_002945.4 30071 . N . . . . GT ./.
669 NC_002945.4 30072 . N . . . . GT ./.
670 NC_002945.4 30073 . N . . . . GT ./.
671 NC_002945.4 30074 . N . . . . GT ./.
672 NC_002945.4 30075 . N . . . . GT ./.
673 NC_002945.4 30076 . N . . . . GT ./.
674 NC_002945.4 30077 . N . . . . GT ./.
675 NC_002945.4 30078 . N . . . . GT ./.
676 NC_002945.4 30079 . N . . . . GT ./.
677 NC_002945.4 30080 . N . . . . GT ./.
678 NC_002945.4 30081 . N . . . . GT ./.
679 NC_002945.4 30082 . N . . . . GT ./.
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685 NC_002945.4 69913 . T C 7603.9 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=255;CIGAR=1X;DP=257;DPB=257;DPRA=0;EPP=3.70006;EPPR=5.18177;GTI=0;LEN=1;MEANALT=2;MQ=60;MQMR=60;NS=1;NUMALT=1;ODDS=353.556;PAIRED=0.988235;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=8501;QR=12;RO=1;RPL=138;RPP=6.76567;RPPR=5.18177;RPR=117;RUN=1;SAF=127;SAP=3.01882;SAR=128;SRF=0;SRP=5.18177;SRR=1;TYPE=snp;technology.ILLUMINA=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:257:1,255:1:12:255:8501:-763.836,-75.9887,0
686 NC_002945.4 70082 . G A 5924.16 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=194;CIGAR=1X;DP=197;DPB=197;DPRA=0;EPP=14.4721;EPPR=0;GTI=0;LEN=1;MEANALT=3;MQ=60;MQMR=0;NS=1;NUMALT=1;ODDS=273.546;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=6664;QR=0;RO=0;RPL=117;RPP=20.9194;RPPR=0;RPR=77;RUN=1;SAF=86;SAP=8.42779;SAR=108;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:197:0,194:0:0:194:6664:-599.623,-58.3998,0
687 NC_002945.4 70438 . A G 6080.55 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=196;CIGAR=1X;DP=196;DPB=196;DPRA=0;EPP=4.60567;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQ=60;MQMR=0;NS=1;NUMALT=1;ODDS=276.319;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=6801;QR=0;RO=0;RPL=93;RPP=4.11819;RPPR=0;RPR=103;RUN=1;SAF=97;SAP=3.05462;SAR=99;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:196:0,196:0:0:196:6801:-612.063,-59.0019,0
688 NC_002945.4 79918 . G A 4959.13 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=161;CIGAR=1X;DP=163;DPB=163;DPRA=0;EPP=21.4746;EPPR=0;GTI=0;LEN=1;MEANALT=3;MQ=60;MQMR=0;NS=1;NUMALT=1;ODDS=227.799;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=5574;QR=0;RO=0;RPL=86;RPP=4.64228;RPPR=0;RPR=75;RUN=1;SAF=79;SAP=3.13169;SAR=82;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:163:0,161:0:0:161:5574:-501.545,-48.4658,0
689 NC_002945.4 96244 . G A 2669.63 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=93;CIGAR=1X;DP=97;DPB=97;DPRA=0;EPP=9.75821;EPPR=5.18177;GTI=0;LEN=1;MEANALT=2;MQ=60;MQMR=60;NS=1;NUMALT=1;ODDS=129.968;PAIRED=0.978495;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3027;QR=12;RO=1;RPL=36;RPP=13.3073;RPPR=5.18177;RPR=57;RUN=1;SAF=53;SAP=6.95631;SAR=40;SRF=1;SRP=5.18177;SRR=0;TYPE=snp;technology.ILLUMINA=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:97:1,93:1:12:93:3027:-271.401,-27.2177,0
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691 NC_002945.4 103813 . A G 3658.32 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=131;CIGAR=1X;DP=131;DPB=131;DPRA=0;EPP=13.3704;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQ=53.1298;MQMR=0;NS=1;NUMALT=1;ODDS=186.21;PAIRED=0.870229;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=4389;QR=0;RO=0;RPL=84;RPP=25.703;RPPR=0;RPR=47;RUN=1;SAF=50;SAP=18.94;SAR=81;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:131:0,131:0:0:131:4389:-374.217,-39.4349,0
692 NC_002945.4 103814 . C G 3681.29 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=132;CIGAR=1X;DP=132;DPB=132;DPRA=0;EPP=10.9724;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQ=52.9167;MQMR=0;NS=1;NUMALT=1;ODDS=187.596;PAIRED=0.871212;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=4410;QR=0;RO=0;RPL=86;RPP=29.3312;RPPR=0;RPR=46;RUN=1;SAF=51;SAP=17.8158;SAR=81;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:132:0,132:0:0:132:4410:-376.535,-39.736,0
693 NC_002945.4 110198 . C T 6630.38 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=217;CIGAR=1X;DP=224;DPB=224;DPRA=0;EPP=10.3052;EPPR=5.18177;GTI=0;LEN=1;MEANALT=3;MQ=60;MQMR=60;NS=1;NUMALT=1;ODDS=284.617;PAIRED=0.995392;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=7472;QR=65;RO=4;RPL=91;RPP=15.2686;RPPR=11.6962;RPR=126;RUN=1;SAF=107;SAP=3.10036;SAR=110;SRF=1;SRP=5.18177;SRR=3;TYPE=snp;technology.ILLUMINA=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:224:4,217:4:65:217:7472:-666.392,-60.6573,0
694 NC_002945.4 114965 . C T 4618.35 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=150;CIGAR=1X;DP=151;DPB=151;DPRA=0;EPP=6.71628;EPPR=5.18177;GTI=0;LEN=1;MEANALT=1;MQ=60;MQMR=60;NS=1;NUMALT=1;ODDS=207.774;PAIRED=0.986667;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=5180;QR=14;RO=1;RPL=75;RPP=3.0103;RPPR=5.18177;RPR=75;RUN=1;SAF=74;SAP=3.06821;SAR=76;SRF=1;SRP=5.18177;SRR=0;TYPE=snp;technology.ILLUMINA=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:151:1,150:1:14:150:5180:-464.867,-44.0555,0
695 NC_002945.4 117800 . C G 4459.46 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=167;CIGAR=1X;DP=170;DPB=170;DPRA=0;EPP=4.58364;EPPR=9.52472;GTI=0;LEN=1;MEANALT=1;MQ=60;MQMR=60;NS=1;NUMALT=1;ODDS=224.964;PAIRED=0.994012;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=5008;QR=37;RO=3;RPL=89;RPP=4.58364;RPPR=9.52472;RPR=78;RUN=1;SAF=78;SAP=4.58364;SAR=89;SRF=3;SRP=9.52472;SRR=0;TYPE=snp;technology.ILLUMINA=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:170:3,167:3:37:167:5008:-447.336,-47.7218,0
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697 NC_002945.4 130166 . C T 5026.14 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=169;CIGAR=1X;DP=170;DPB=170;DPRA=0;EPP=3.12594;EPPR=0;GTI=0;LEN=1;MEANALT=2;MQ=60;MQMR=0;NS=1;NUMALT=1;ODDS=238.889;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=5630;QR=0;RO=0;RPL=83;RPP=3.12594;RPPR=0;RPR=86;RUN=1;SAF=93;SAP=6.72365;SAR=76;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:170:0,169:0:0:169:5630:-506.645,-50.8741,0
698 NC_002945.4 130237 . T C 5794.53 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=191;CIGAR=1X;DP=194;DPB=194;DPRA=0;EPP=9.02448;EPPR=0;GTI=0;LEN=1;MEANALT=3;MQ=60;MQMR=0;NS=1;NUMALT=1;ODDS=269.387;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=6496;QR=0;RO=0;RPL=83;RPP=10.1159;RPPR=0;RPR=108;RUN=1;SAF=99;SAP=3.56738;SAR=92;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:194:0,191:0:0:191:6496:-584.534,-57.4967,0
699 NC_002945.4 140686 . A G 8220.71 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=271;CIGAR=1X;DP=274;DPB=274;DPRA=0;EPP=4.81318;EPPR=5.18177;GTI=0;LEN=1;MEANALT=2;MQ=60;MQMR=60;NS=1;NUMALT=1;ODDS=375.246;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=9207;QR=14;RO=1;RPL=159;RPP=20.7106;RPPR=5.18177;RPR=112;RUN=1;SAF=133;SAP=3.21062;SAR=138;SRF=0;SRP=5.18177;SRR=1;TYPE=snp;technology.ILLUMINA=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:274:1,271:1:14:271:9207:-827.085,-80.6185,0
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703 NC_002945.4 151025 . N . . . . GT ./.
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728 NC_002945.4 228109 . C T 4557.85 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=152;CIGAR=1X;DP=155;DPB=155;DPRA=0;EPP=3.06744;EPPR=9.52472;GTI=0;LEN=1;MEANALT=1;MQ=60;MQMR=60;NS=1;NUMALT=1;ODDS=202.036;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=5123;QR=38;RO=3;RPL=75;RPP=3.06744;RPPR=3.73412;RPR=77;RUN=1;SAF=76;SAP=3.0103;SAR=76;SRF=2;SRP=3.73412;SRR=1;TYPE=snp;technology.ILLUMINA=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:155:3,152:3:38:152:5123:-457.61,-43.113,0
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730 NC_002945.4 232188 . G C 3092.5 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=116;CIGAR=1X;DP=117;DPB=117;DPRA=0;EPP=9.07545;EPPR=5.18177;GTI=0;LEN=1;MEANALT=1;MQ=60;MQMR=60;NS=1;NUMALT=1;ODDS=161.356;PAIRED=0.965517;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3527;QR=12;RO=1;RPL=81;RPP=42.621;RPPR=5.18177;RPR=35;RUN=1;SAF=56;SAP=3.30981;SAR=60;SRF=1;SRP=5.18177;SRR=0;TYPE=snp;technology.ILLUMINA=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:117:1,116:1:12:116:3527:-316.409,-34.0205,0
731 NC_002945.4 295519 . T C 6464.87 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=212;CIGAR=1X;DP=214;DPB=214;DPRA=0;EPP=16.285;EPPR=0;GTI=0;LEN=1;MEANALT=2;MQ=59.7736;MQMR=0;NS=1;NUMALT=1;ODDS=298.5;PAIRED=0.957547;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=7260;QR=0;RO=0;RPL=89;RPP=14.851;RPPR=0;RPR=123;RUN=1;SAF=111;SAP=4.03458;SAR=101;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:214:0,212:0:0:212:7260:-652.886,-63.8184,0
732 NC_002945.4 299636 . A G 7759.67 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=245;CIGAR=1X;DP=245;DPB=245;DPRA=0;EPP=3.09007;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQ=60;MQMR=0;NS=1;NUMALT=1;ODDS=344.247;PAIRED=0.995918;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=8667;QR=0;RO=0;RPL=120;RPP=3.23188;RPPR=0;RPR=125;RUN=1;SAF=121;SAP=3.09007;SAR=124;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:245:0,245:0:0:245:8667:-779.885,-73.7524,0
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734 NC_002945.4 306656 . N . . . . GT ./.
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744 NC_002945.4 306666 . N . . . . GT ./.
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750 NC_002945.4 306672 . N . . . . GT ./.
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790 NC_002945.4 332124 . C T 235.47099999999998 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=10;CIGAR=1X;DP=11;DPB=11;DPRA=0;EPP=6.48466;EPPR=0;GTI=0;LEN=1;MEANALT=2;MQ=59.1;MQMR=0;NS=1;NUMALT=1;ODDS=18.4681;PAIRED=0.9;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=314;QR=0;RO=0;RPL=10;RPP=24.725;RPPR=0;RPR=0;RUN=1;SAF=7;SAP=6.48466;SAR=3;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:11:0,10:0:0:10:314:-28.4197,-3.0103,0
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793 NC_002945.4 332145 . G T 139.142 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=6;CIGAR=1X;DP=6;DPB=6;DPRA=0;EPP=16.0391;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQ=60;MQMR=0;NS=1;NUMALT=1;ODDS=12.9229;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=211;QR=0;RO=0;RPL=6;RPP=16.0391;RPPR=0;RPR=0;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:6:0,6:0:0:6:211:-19.3328,-1.80618,0
794 NC_002945.4 332154 . G C 126.29799999999999 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=6;CIGAR=1X;DP=6;DPB=6;DPRA=0;EPP=16.0391;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQ=60;MQMR=0;NS=1;NUMALT=1;ODDS=12.9229;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=197;QR=0;RO=0;RPL=6;RPP=16.0391;RPPR=0;RPR=0;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:6:0,6:0:0:6:197:-18.0484,-1.80618,0
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829 NC_002945.4 332215 . C G 379.908 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=17;CIGAR=1X;DP=17;DPB=17;DPRA=0;EPP=39.9253;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQ=57.1176;MQMR=0;NS=1;NUMALT=1;ODDS=28.1722;PAIRED=0.882353;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=596;QR=0;RO=0;RPL=0;RPP=39.9253;RPPR=0;RPR=17;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:17:0,17:0:0:17:596:-53.3433,-5.11751,0
830 NC_002945.4 332218 . A G 439.338 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=19;CIGAR=1X;DP=19;DPB=19;DPRA=0;EPP=44.2683;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQ=57.4211;MQMR=0;NS=1;NUMALT=1;ODDS=30.9448;PAIRED=0.894737;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=681;QR=0;RO=0;RPL=0;RPP=44.2683;RPPR=0;RPR=19;RUN=1;SAF=19;SAP=44.2683;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:19:0,19:0:0:19:681:-61.0925,-5.71957,0
831 NC_002945.4 333010 . T G 2567.13 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=84;CIGAR=1X;DP=84;DPB=84;DPRA=0;EPP=8.07707;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQ=60;MQMR=0;NS=1;NUMALT=1;ODDS=121.054;PAIRED=0.964286;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=2912;QR=0;RO=0;RPL=51;RPP=11.386;RPPR=0;RPR=33;RUN=1;SAF=52;SAP=13.3506;SAR=32;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:84:0,84:0:0:84:2912:-262.265,-25.2865,0
832 NC_002945.4 333486 . N . . . . GT ./.
833 NC_002945.4 333487 . N . . . . GT ./.
834 NC_002945.4 333488 . N . . . . GT ./.
835 NC_002945.4 333489 . N . . . . GT ./.
836 NC_002945.4 333490 . N . . . . GT ./.
837 NC_002945.4 333491 . N . . . . GT ./.
838 NC_002945.4 333492 . N . . . . GT ./.
839 NC_002945.4 333493 . N . . . . GT ./.
840 NC_002945.4 333494 . N . . . . GT ./.
841 NC_002945.4 333495 . N . . . . GT ./.
842 NC_002945.4 333496 . N . . . . GT ./.
843 NC_002945.4 333497 . N . . . . GT ./.
844 NC_002945.4 333498 . N . . . . GT ./.
845 NC_002945.4 333499 . N . . . . GT ./.
846 NC_002945.4 333500 . N . . . . GT ./.
847 NC_002945.4 333501 . N . . . . GT ./.
848 NC_002945.4 333502 . N . . . . GT ./.
849 NC_002945.4 333503 . N . . . . GT ./.
850 NC_002945.4 333504 . N . . . . GT ./.
851 NC_002945.4 333505 . N . . . . GT ./.
852 NC_002945.4 333506 . N . . . . GT ./.
853 NC_002945.4 333507 . N . . . . GT ./.
854 NC_002945.4 333508 . N . . . . GT ./.
855 NC_002945.4 333509 . N . . . . GT ./.
856 NC_002945.4 333510 . N . . . . GT ./.
857 NC_002945.4 333511 . N . . . . GT ./.
858 NC_002945.4 333512 . N . . . . GT ./.
859 NC_002945.4 333513 . N . . . . GT ./.
860 NC_002945.4 333514 . N . . . . GT ./.
861 NC_002945.4 333515 . N . . . . GT ./.
862 NC_002945.4 333516 . N . . . . GT ./.
863 NC_002945.4 333517 . N . . . . GT ./.
864 NC_002945.4 333518 . N . . . . GT ./.
865 NC_002945.4 333519 . N . . . . GT ./.
866 NC_002945.4 333520 . N . . . . GT ./.
867 NC_002945.4 333521 . N . . . . GT ./.
868 NC_002945.4 333522 . N . . . . GT ./.
869 NC_002945.4 333523 . N . . . . GT ./.
870 NC_002945.4 333524 . N . . . . GT ./.
871 NC_002945.4 333525 . N . . . . GT ./.
872 NC_002945.4 333526 . N . . . . GT ./.
873 NC_002945.4 333527 . N . . . . GT ./.
874 NC_002945.4 333528 . N . . . . GT ./.
875 NC_002945.4 333529 . N . . . . GT ./.
876 NC_002945.4 333530 . N . . . . GT ./.
877 NC_002945.4 333531 . N . . . . GT ./.
878 NC_002945.4 333532 . N . . . . GT ./.
879 NC_002945.4 333533 . N . . . . GT ./.
880 NC_002945.4 333534 . N . . . . GT ./.
881 NC_002945.4 333535 . N . . . . GT ./.
882 NC_002945.4 333536 . N . . . . GT ./.
883 NC_002945.4 333537 . N . . . . GT ./.
884 NC_002945.4 333538 . N . . . . GT ./.
885 NC_002945.4 333539 . N . . . . GT ./.
886 NC_002945.4 333540 . N . . . . GT ./.
887 NC_002945.4 333541 . N . . . . GT ./.
888 NC_002945.4 333542 . N . . . . GT ./.
889 NC_002945.4 333543 . N . . . . GT ./.
890 NC_002945.4 333544 . N . . . . GT ./.
891 NC_002945.4 333545 . N . . . . GT ./.
892 NC_002945.4 333546 . N . . . . GT ./.
893 NC_002945.4 333547 . N . . . . GT ./.
894 NC_002945.4 333548 . N . . . . GT ./.
895 NC_002945.4 333549 . N . . . . GT ./.
896 NC_002945.4 333550 . N . . . . GT ./.
897 NC_002945.4 333551 . N . . . . GT ./.
898 NC_002945.4 333552 . N . . . . GT ./.
899 NC_002945.4 333553 . N . . . . GT ./.
900 NC_002945.4 333590 . N . . . . GT ./.
901 NC_002945.4 333591 . N . . . . GT ./.
902 NC_002945.4 333592 . N . . . . GT ./.
903 NC_002945.4 333593 . N . . . . GT ./.
904 NC_002945.4 333594 . N . . . . GT ./.
905 NC_002945.4 333595 . N . . . . GT ./.
906 NC_002945.4 333596 . N . . . . GT ./.
907 NC_002945.4 333597 . N . . . . GT ./.
908 NC_002945.4 333598 . N . . . . GT ./.
909 NC_002945.4 333599 . N . . . . GT ./.
910 NC_002945.4 333600 . N . . . . GT ./.
911 NC_002945.4 333601 . N . . . . GT ./.
912 NC_002945.4 333602 . N . . . . GT ./.
913 NC_002945.4 333603 . N . . . . GT ./.
914 NC_002945.4 333604 . N . . . . GT ./.
915 NC_002945.4 333605 . N . . . . GT ./.
916 NC_002945.4 333606 . N . . . . GT ./.
917 NC_002945.4 333607 . N . . . . GT ./.
918 NC_002945.4 333608 . N . . . . GT ./.
919 NC_002945.4 333609 . N . . . . GT ./.
920 NC_002945.4 333610 . N . . . . GT ./.
921 NC_002945.4 333611 . N . . . . GT ./.
922 NC_002945.4 333612 . N . . . . GT ./.
923 NC_002945.4 333613 . N . . . . GT ./.
924 NC_002945.4 333614 . N . . . . GT ./.
925 NC_002945.4 333615 . N . . . . GT ./.
926 NC_002945.4 333616 . N . . . . GT ./.
927 NC_002945.4 333617 . N . . . . GT ./.
928 NC_002945.4 333618 . N . . . . GT ./.
929 NC_002945.4 333619 . N . . . . GT ./.
930 NC_002945.4 333620 . N . . . . GT ./.
931 NC_002945.4 333621 . N . . . . GT ./.
932 NC_002945.4 333622 . N . . . . GT ./.
933 NC_002945.4 333623 . N . . . . GT ./.
934 NC_002945.4 333624 . N . . . . GT ./.
935 NC_002945.4 333625 . N . . . . GT ./.
936 NC_002945.4 333626 . N . . . . GT ./.
937 NC_002945.4 333627 . N . . . . GT ./.
938 NC_002945.4 333628 . N . . . . GT ./.
939 NC_002945.4 333629 . N . . . . GT ./.
940 NC_002945.4 333630 . N . . . . GT ./.
941 NC_002945.4 333631 . N . . . . GT ./.
942 NC_002945.4 333632 . N . . . . GT ./.
943 NC_002945.4 333633 . N . . . . GT ./.
944 NC_002945.4 333634 . N . . . . GT ./.
945 NC_002945.4 334320 . T C 2194.66 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=79;CIGAR=1X;DP=80;DPB=80;DPRA=0;EPP=3.69747;EPPR=0;GTI=0;LEN=1;MEANALT=2;MQ=53.4051;MQMR=0;NS=1;NUMALT=1;ODDS=114.122;PAIRED=0.987342;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=2577;QR=0;RO=0;RPL=41;RPP=3.25768;RPPR=0;RPR=38;RUN=1;SAF=46;SAP=7.6556;SAR=33;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:80:0,79:0:0:79:2577:-223.164,-23.7814,0 64 NC_002945.4 334320 . T C 2194.66 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=79;CIGAR=1X;DP=80;DPB=80;DPRA=0;EPP=3.69747;EPPR=0;GTI=0;LEN=1;MEANALT=2;MQ=53.4051;MQMR=0;NS=1;NUMALT=1;ODDS=114.122;PAIRED=0.987342;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=2577;QR=0;RO=0;RPL=41;RPP=3.25768;RPPR=0;RPR=38;RUN=1;SAF=46;SAP=7.6556;SAR=33;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:80:0,79:0:0:79:2577:-223.164,-23.7814,0
946 NC_002945.4 334323 . T C 2171.15 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=79;CIGAR=1X;DP=79;DPB=79;DPRA=0;EPP=5.23675;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQ=53.4051;MQMR=0;NS=1;NUMALT=1;ODDS=114.122;PAIRED=0.987342;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=2540;QR=0;RO=0;RPL=40;RPP=3.03779;RPPR=0;RPR=39;RUN=1;SAF=45;SAP=6.33623;SAR=34;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:79:0,79:0:0:79:2540:-220.812,-23.7814,0 65 NC_002945.4 334323 . T C 2171.15 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=79;CIGAR=1X;DP=79;DPB=79;DPRA=0;EPP=5.23675;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQ=53.4051;MQMR=0;NS=1;NUMALT=1;ODDS=114.122;PAIRED=0.987342;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=2540;QR=0;RO=0;RPL=40;RPP=3.03779;RPPR=0;RPR=39;RUN=1;SAF=45;SAP=6.33623;SAR=34;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:79:0,79:0:0:79:2540:-220.812,-23.7814,0
947 NC_002945.4 336477 . N . . . . GT ./.
948 NC_002945.4 336478 . N . . . . GT ./.
949 NC_002945.4 336479 . N . . . . GT ./.
950 NC_002945.4 336480 . N . . . . GT ./.
951 NC_002945.4 336481 . N . . . . GT ./.
952 NC_002945.4 336482 . N . . . . GT ./.
953 NC_002945.4 336483 . N . . . . GT ./.
954 NC_002945.4 336484 . N . . . . GT ./.
955 NC_002945.4 336485 . N . . . . GT ./.
956 NC_002945.4 336486 . N . . . . GT ./.
957 NC_002945.4 336487 . N . . . . GT ./.
958 NC_002945.4 336488 . N . . . . GT ./.
959 NC_002945.4 336489 . N . . . . GT ./.
960 NC_002945.4 336590 . N . . . . GT ./.
961 NC_002945.4 336591 . N . . . . GT ./.
962 NC_002945.4 336592 . N . . . . GT ./.
963 NC_002945.4 336593 . N . . . . GT ./.
964 NC_002945.4 336594 . N . . . . GT ./.
965 NC_002945.4 336595 . N . . . . GT ./.
966 NC_002945.4 336596 . N . . . . GT ./.
967 NC_002945.4 336597 . N . . . . GT ./.
968 NC_002945.4 336598 . N . . . . GT ./.
969 NC_002945.4 336599 . N . . . . GT ./.
970 NC_002945.4 336600 . N . . . . GT ./.
971 NC_002945.4 336601 . N . . . . GT ./.
972 NC_002945.4 336602 . N . . . . GT ./.
973 NC_002945.4 336603 . N . . . . GT ./.
974 NC_002945.4 336604 . N . . . . GT ./.
975 NC_002945.4 336605 . N . . . . GT ./.
976 NC_002945.4 336606 . N . . . . GT ./.
977 NC_002945.4 336607 . N . . . . GT ./.
978 NC_002945.4 336608 . N . . . . GT ./.
979 NC_002945.4 336609 . N . . . . GT ./.
980 NC_002945.4 336610 . N . . . . GT ./.
981 NC_002945.4 336611 . N . . . . GT ./.
982 NC_002945.4 336612 . N . . . . GT ./.
983 NC_002945.4 336613 . N . . . . GT ./.
984 NC_002945.4 336614 . N . . . . GT ./.
985 NC_002945.4 336615 . N . . . . GT ./.
986 NC_002945.4 336616 . N . . . . GT ./.
987 NC_002945.4 336617 . N . . . . GT ./.
988 NC_002945.4 336618 . N . . . . GT ./.
989 NC_002945.4 336619 . N . . . . GT ./.
990 NC_002945.4 336620 . N . . . . GT ./.
991 NC_002945.4 336621 . N . . . . GT ./.
992 NC_002945.4 336622 . N . . . . GT ./.
993 NC_002945.4 336623 . N . . . . GT ./.
994 NC_002945.4 336624 . N . . . . GT ./.
995 NC_002945.4 336625 . N . . . . GT ./.
996 NC_002945.4 336626 . N . . . . GT ./.
997 NC_002945.4 336627 . N . . . . GT ./.
998 NC_002945.4 336628 . N . . . . GT ./.
999 NC_002945.4 336629 . N . . . . GT ./.
1000 NC_002945.4 336630 . N . . . . GT ./.
1001 NC_002945.4 336631 . N . . . . GT ./.
1002 NC_002945.4 336632 . N . . . . GT ./.
1003 NC_002945.4 336633 . N . . . . GT ./.
1004 NC_002945.4 336634 . N . . . . GT ./.
1005 NC_002945.4 336635 . N . . . . GT ./.
1006 NC_002945.4 336636 . N . . . . GT ./.
1007 NC_002945.4 336637 . N . . . . GT ./.
1008 NC_002945.4 336638 . N . . . . GT ./.
1009 NC_002945.4 336639 . N . . . . GT ./.
1010 NC_002945.4 339369 . N . . . . GT ./.
1011 NC_002945.4 339370 . N . . . . GT ./.
1012 NC_002945.4 339371 . N . . . . GT ./.
1013 NC_002945.4 339372 . N . . . . GT ./.
1014 NC_002945.4 339373 . N . . . . GT ./.
1015 NC_002945.4 339374 . N . . . . GT ./.
1016 NC_002945.4 339375 . N . . . . GT ./.
1017 NC_002945.4 339376 . N . . . . GT ./.
1018 NC_002945.4 339377 . N . . . . GT ./.
1019 NC_002945.4 339378 . N . . . . GT ./.
1020 NC_002945.4 339379 . N . . . . GT ./.
1021 NC_002945.4 339380 . N . . . . GT ./.
1022 NC_002945.4 339381 . N . . . . GT ./.
1023 NC_002945.4 339382 . N . . . . GT ./.
1024 NC_002945.4 339383 . N . . . . GT ./.
1025 NC_002945.4 339384 . N . . . . GT ./.
1026 NC_002945.4 339385 . N . . . . GT ./.
1027 NC_002945.4 339386 . N . . . . GT ./.
1028 NC_002945.4 339387 . N . . . . GT ./.
1029 NC_002945.4 339388 . N . . . . GT ./.
1030 NC_002945.4 339389 . N . . . . GT ./.
1031 NC_002945.4 339390 . N . . . . GT ./.
1032 NC_002945.4 339391 . N . . . . GT ./.
1033 NC_002945.4 339392 . N . . . . GT ./.
1034 NC_002945.4 339393 . N . . . . GT ./.
1035 NC_002945.4 339394 . N . . . . GT ./.
1036 NC_002945.4 339395 . N . . . . GT ./.
1037 NC_002945.4 339396 . N . . . . GT ./.
1038 NC_002945.4 339397 . N . . . . GT ./.
1039 NC_002945.4 339398 . N . . . . GT ./.
1040 NC_002945.4 339399 . N . . . . GT ./.
1041 NC_002945.4 339400 . N . . . . GT ./.
1042 NC_002945.4 339401 . N . . . . GT ./.
1043 NC_002945.4 339402 . N . . . . GT ./.
1044 NC_002945.4 339403 . N . . . . GT ./.
1045 NC_002945.4 339404 . N . . . . GT ./.
1046 NC_002945.4 339405 . N . . . . GT ./.
1047 NC_002945.4 339406 . N . . . . GT ./. 66 NC_002945.4 339406 . N . . . . GT ./.
1048 NC_002945.4 339407 . N . . . . GT ./. 67 NC_002945.4 339407 . N . . . . GT ./.
1049 NC_002945.4 339408 . N . . . . GT ./. 68 NC_002945.4 339408 . N . . . . GT ./.
1050 NC_002945.4 339409 . N . . . . GT ./. 69 NC_002945.4 339409 . N . . . . GT ./.
1051 NC_002945.4 339410 . N . . . . GT ./. 70 NC_002945.4 339410 . N . . . . GT ./.
1059 NC_002945.4 364560 . A G 6594.02 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=209;CIGAR=1X;DP=209;DPB=209;DPRA=0;EPP=14.3248;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQ=59.9234;MQMR=0;NS=1;NUMALT=1;ODDS=294.341;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=7388;QR=0;RO=0;RPL=116;RPP=8.50651;RPPR=0;RPR=93;RUN=1;SAF=103;SAP=3.10381;SAR=106;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:209:0,209:0:0:209:7388:-664.866,-62.9153,0 78 NC_002945.4 364560 . A G 6594.02 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=209;CIGAR=1X;DP=209;DPB=209;DPRA=0;EPP=14.3248;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQ=59.9234;MQMR=0;NS=1;NUMALT=1;ODDS=294.341;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=7388;QR=0;RO=0;RPL=116;RPP=8.50651;RPPR=0;RPR=93;RUN=1;SAF=103;SAP=3.10381;SAR=106;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:209:0,209:0:0:209:7388:-664.866,-62.9153,0
1060 NC_002945.4 364804 . T C 5622.3 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=193;CIGAR=1X;DP=193;DPB=193;DPRA=0;EPP=7.97206;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQ=60;MQMR=0;NS=1;NUMALT=1;ODDS=272.16;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=6321;QR=0;RO=0;RPL=119;RPP=25.7939;RPPR=0;RPR=74;RUN=1;SAF=90;SAP=4.91174;SAR=103;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:193:0,193:0:0:193:6321:-568.925,-58.0988,0 79 NC_002945.4 364804 . T C 5622.3 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=193;CIGAR=1X;DP=193;DPB=193;DPRA=0;EPP=7.97206;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQ=60;MQMR=0;NS=1;NUMALT=1;ODDS=272.16;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=6321;QR=0;RO=0;RPL=119;RPP=25.7939;RPPR=0;RPR=74;RUN=1;SAF=90;SAP=4.91174;SAR=103;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:193:0,193:0:0:193:6321:-568.925,-58.0988,0
1061 NC_002945.4 366022 . T C 4678.56 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=159;CIGAR=1X;DP=159;DPB=159;DPRA=0;EPP=3.35173;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQ=60;MQMR=0;NS=1;NUMALT=1;ODDS=225.026;PAIRED=0.987421;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=5277;QR=0;RO=0;RPL=103;RPP=33.1787;RPPR=0;RPR=56;RUN=1;SAF=89;SAP=7.9405;SAR=70;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:159:0,159:0:0:159:5277:-475.022,-47.8638,0 80 NC_002945.4 366022 . T C 4678.56 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=159;CIGAR=1X;DP=159;DPB=159;DPRA=0;EPP=3.35173;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQ=60;MQMR=0;NS=1;NUMALT=1;ODDS=225.026;PAIRED=0.987421;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=5277;QR=0;RO=0;RPL=103;RPP=33.1787;RPPR=0;RPR=56;RUN=1;SAF=89;SAP=7.9405;SAR=70;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:159:0,159:0:0:159:5277:-475.022,-47.8638,0
1062 NC_002945.4 402148 . G T 85.8237 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=4;CIGAR=1X;DP=4;DPB=4;DPRA=0;EPP=11.6962;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQ=40;MQMR=0;NS=1;NUMALT=1;ODDS=10.1503;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=136;QR=0;RO=0;RPL=0;RPP=11.6962;RPPR=0;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:4:0,4:0:0:4:136:-12.1947,-1.20412,0 81 NC_002945.4 402148 . G T 85.8237 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=4;CIGAR=1X;DP=4;DPB=4;DPRA=0;EPP=11.6962;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQ=40;MQMR=0;NS=1;NUMALT=1;ODDS=10.1503;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=136;QR=0;RO=0;RPL=0;RPP=11.6962;RPPR=0;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:4:0,4:0:0:4:136:-12.1947,-1.20412,0
1063 NC_002945.4 407246 . C G 2433.98 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=91;CIGAR=1X;DP=93;DPB=93;DPRA=0;EPP=7.04303;EPPR=0;GTI=0;LEN=1;MEANALT=2;MQ=60;MQMR=0;NS=1;NUMALT=1;ODDS=130.758;PAIRED=0.989011;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=2860;QR=0;RO=0;RPL=42;RPP=4.17955;RPPR=0;RPR=49;RUN=1;SAF=14;SAP=97.7199;SAR=77;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:93:0,91:0:0:91:2860:-257.436,-27.3937,0 82 NC_002945.4 407246 . C G 2433.98 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=91;CIGAR=1X;DP=93;DPB=93;DPRA=0;EPP=7.04303;EPPR=0;GTI=0;LEN=1;MEANALT=2;MQ=60;MQMR=0;NS=1;NUMALT=1;ODDS=130.758;PAIRED=0.989011;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=2860;QR=0;RO=0;RPL=42;RPP=4.17955;RPPR=0;RPR=49;RUN=1;SAF=14;SAP=97.7199;SAR=77;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:93:0,91:0:0:91:2860:-257.436,-27.3937,0
1064 NC_002945.4 430077 . C T 6487.12 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=210;CIGAR=1X;DP=211;DPB=211;DPRA=0;EPP=3.05166;EPPR=0;GTI=0;LEN=1;MEANALT=2;MQ=60;MQMR=0;NS=1;NUMALT=1;ODDS=295.727;PAIRED=0.995238;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=7257;QR=0;RO=0;RPL=114;RPP=6.36057;RPPR=0;RPR=96;RUN=1;SAF=110;SAP=4.04433;SAR=100;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:211:0,210:0:0:210:7257:-652.932,-63.2163,0
1065 NC_002945.4 438482 . C G 2522.44 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=88;CIGAR=1X;DP=89;DPB=89;DPRA=0;EPP=19.6912;EPPR=0;GTI=0;LEN=1;MEANALT=2;MQ=60;MQMR=0;NS=1;NUMALT=1;ODDS=126.599;PAIRED=0.977273;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=2910;QR=0;RO=0;RPL=27;RPP=31.5356;RPPR=0;RPR=61;RUN=1;SAF=30;SAP=22.3561;SAR=58;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:89:0,88:0:0:88:2910:-261.971,-26.4906,0
1066 NC_002945.4 441762 . C T 3223.01 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=114;CIGAR=1X;DP=118;DPB=118;DPRA=0;EPP=3.08649;EPPR=5.18177;GTI=0;LEN=1;MEANALT=2;MQ=60;MQMR=60;NS=1;NUMALT=1;ODDS=158.877;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3640;QR=12;RO=1;RPL=71;RPP=17.9439;RPPR=5.18177;RPR=43;RUN=1;SAF=51;SAP=5.75321;SAR=63;SRF=1;SRP=5.18177;SRR=0;TYPE=snp;technology.ILLUMINA=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:118:1,114:1:12:114:3640:-326.556,-33.5385,0
1067 NC_002945.4 449922 . T C 4823.83 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=160;CIGAR=1X;DP=161;DPB=161;DPRA=0;EPP=4.36747;EPPR=5.18177;GTI=0;LEN=1;MEANALT=1;MQ=59.5938;MQMR=60;NS=1;NUMALT=1;ODDS=221.573;PAIRED=0.98125;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=5447;QR=14;RO=1;RPL=55;RPP=36.9396;RPPR=5.18177;RPR=105;RUN=1;SAF=76;SAP=3.87889;SAR=84;SRF=1;SRP=5.18177;SRR=0;TYPE=snp;technology.ILLUMINA=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:161:1,160:1:14:160:5447:-488.732,-47.0658,0
1068 NC_002945.4 452398 . G A 5682.95 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=191;CIGAR=1X;DP=193;DPB=193;DPRA=0;EPP=8.02401;EPPR=0;GTI=0;LEN=1;MEANALT=2;MQ=60;MQMR=0;NS=1;NUMALT=1;ODDS=269.387;PAIRED=0.994764;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=6375;QR=0;RO=0;RPL=108;RPP=10.1159;RPPR=0;RPR=83;RUN=1;SAF=86;SAP=7.1145;SAR=105;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:193:0,191:0:0:191:6375:-573.63,-57.4967,0
1069 NC_002945.4 460722 . G A 4946.91 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=165;CIGAR=1X;DP=166;DPB=166;DPRA=0;EPP=11.2356;EPPR=5.18177;GTI=0;LEN=1;MEANALT=1;MQ=60;MQMR=60;NS=1;NUMALT=1;ODDS=225.021;PAIRED=0.981818;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=5569;QR=29;RO=1;RPL=87;RPP=4.0763;RPPR=5.18177;RPR=78;RUN=1;SAF=85;SAP=3.33931;SAR=80;SRF=0;SRP=5.18177;SRR=1;TYPE=snp;technology.ILLUMINA=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:166:1,165:1:29:165:5569:-498.37,-47.0713,0
1070 NC_002945.4 467343 . C T 4694.23 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=159;CIGAR=1X;DP=163;DPB=163;DPRA=0;EPP=5.31834;EPPR=5.18177;GTI=0;LEN=1;MEANALT=2;MQ=60;MQMR=60;NS=1;NUMALT=1;ODDS=220.934;PAIRED=0.981132;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=5264;QR=12;RO=1;RPL=80;RPP=3.02396;RPPR=5.18177;RPR=79;RUN=1;SAF=72;SAP=6.08314;SAR=87;SRF=1;SRP=5.18177;SRR=0;TYPE=snp;technology.ILLUMINA=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:163:1,159:1:12:159:5264:-472.655,-47.0865,0
1071 NC_002945.4 467402 . C A 5465.13 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=182;CIGAR=1X;DP=183;DPB=183;DPRA=0;EPP=3.43982;EPPR=5.18177;GTI=0;LEN=1;MEANALT=1;MQ=60;MQMR=60;NS=1;NUMALT=1;ODDS=249.181;PAIRED=0.978022;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=6135;QR=26;RO=1;RPL=87;RPP=3.77389;RPPR=5.18177;RPR=95;RUN=1;SAF=85;SAP=4.72839;SAR=97;SRF=1;SRP=5.18177;SRR=0;TYPE=snp;technology.ILLUMINA=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:183:1,182:1:26:182:6135:-549.586,-52.4887,0
1072 NC_002945.4 479644 . G A 6502.05 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=213;CIGAR=1X;DP=213;DPB=213;DPRA=0;EPP=3.50984;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQ=60;MQMR=0;NS=1;NUMALT=1;ODDS=299.886;PAIRED=0.971831;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=7282;QR=0;RO=0;RPL=118;RPP=8.4033;RPPR=0;RPR=95;RUN=1;SAF=93;SAP=10.4422;SAR=120;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:213:0,213:0:0:213:7282:-655.323,-64.1194,0
1073 NC_002945.4 483845 . T C 6908.05 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=226;CIGAR=1X;DP=226;DPB=226;DPRA=0;EPP=4.39389;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQ=59.6947;MQMR=0;NS=1;NUMALT=1;ODDS=317.908;PAIRED=0.986726;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=7736;QR=0;RO=0;RPL=115;RPP=3.16403;RPPR=0;RPR=111;RUN=1;SAF=110;SAP=3.3562;SAR=116;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:226:0,226:0:0:226:7736:-694.819,-68.0328,0
1074 NC_002945.4 485584 . G A 6925.43 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=219;CIGAR=1X;DP=219;DPB=219;DPRA=0;EPP=3.09954;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQ=60;MQMR=0;NS=1;NUMALT=1;ODDS=308.204;PAIRED=0.986301;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=7743;QR=0;RO=0;RPL=119;RPP=6.58976;RPPR=0;RPR=100;RUN=1;SAF=113;SAP=3.49615;SAR=106;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:219:0,219:0:0:219:7743:-696.763,-65.9256,0
1075 NC_002945.4 488897 . G T 3635.93 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=139;CIGAR=1X;DP=147;DPB=147;DPRA=0;EPP=3.1509;EPPR=10.7656;GTI=0;LEN=1;MEANALT=2;MQ=60;MQMR=60;NS=1;NUMALT=1;ODDS=165.544;PAIRED=0.985612;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4207;QR=110;RO=7;RPL=43;RPP=46.8928;RPPR=5.80219;RPR=96;RUN=1;SAF=78;SAP=7.52509;SAR=61;SRF=6;SRP=10.7656;SRR=1;TYPE=snp;technology.ILLUMINA=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:147:7,139:7:110:139:4207:-368.725,-34.0199,0
1076 NC_002945.4 490878 . G A 7054.95 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=222;CIGAR=1X;DP=223;DPB=223;DPRA=0;EPP=5.51434;EPPR=0;GTI=0;LEN=1;MEANALT=2;MQ=60;MQMR=0;NS=1;NUMALT=1;ODDS=312.363;PAIRED=0.977477;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=7893;QR=0;RO=0;RPL=99;RPP=8.64439;RPPR=0;RPR=123;RUN=1;SAF=108;SAP=3.36243;SAR=114;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:223:0,222:0:0:222:7893:-710.157,-66.8287,0
1077 NC_002945.4 507929 . T C 5517.08 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=179;CIGAR=1X;DP=179;DPB=179;DPRA=0;EPP=3.02243;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQ=60;MQMR=0;NS=1;NUMALT=1;ODDS=252.752;PAIRED=0.977654;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=6172;QR=0;RO=0;RPL=86;RPP=3.60473;RPPR=0;RPR=93;RUN=1;SAF=92;SAP=3.31358;SAR=87;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:179:0,179:0:0:179:6172:-555.473,-53.8844,0
1078 NC_002945.4 518522 . C T 5022.35 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=170;CIGAR=1X;DP=175;DPB=175;DPRA=0;EPP=3.8278;EPPR=9.52472;GTI=0;LEN=1;MEANALT=2;MQ=60;MQMR=60;NS=1;NUMALT=1;ODDS=222.502;PAIRED=0.994118;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=5690;QR=59;RO=3;RPL=64;RPP=25.5425;RPPR=3.73412;RPR=106;RUN=1;SAF=91;SAP=4.84966;SAR=79;SRF=2;SRP=3.73412;SRR=1;TYPE=snp;technology.ILLUMINA=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:175:3,170:3:59:170:5690:-506.649,-46.7265,0
1079 NC_002945.4 519412 . T C 2988.47 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=100;CIGAR=1X;DP=100;DPB=100;DPRA=0;EPP=4.40004;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQ=60;MQMR=0;NS=1;NUMALT=1;ODDS=143.235;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=3388;QR=0;RO=0;RPL=34;RPP=25.2462;RPPR=0;RPR=66;RUN=1;SAF=58;SAP=8.56927;SAR=42;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:100:0,100:0:0:100:3388:-305.075,-30.103,0
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