Mercurial > repos > greg > vsnp_get_snps

diff vsnp_get_snps.xml @ 13:cd636b0e4f95 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
"planemo upload for repository https://github.com/gregvonkuster/galaxy_tools/tree/master/tools/sequence_analysis/vsnp/vsnp_get_snps commit cab8ee43e902a3ae7b0fd6b06842c4b5c221af25"
author greg
date Tue, 21 Sep 2021 00:21:36 +0000
parents 544b2ed99a9a
children 44b84d32883c
line wrap: on
line diff
--- a/vsnp_get_snps.xml	Wed Aug 25 17:17:37 2021 +0000
+++ b/vsnp_get_snps.xml	Tue Sep 21 00:21:36 2021 +0000
@@ -28,7 +28,7 @@
         #if str($dbkey) == '?':
             #set dbkey = $i.metadata.dbkey
         #else if str($dbkey) != $i.metadata.dbkey:
-            >&2 echo "The dbkeys associated with the zero coverage VCF files with SNPs found in closely related isolate groups are not unique" && exit 1
+            >&2 echo "The dbkeys associated with the zero coverage VCF files with SNPs found in closely related isolate groups are not unique, check ${i.name}" && exit 1
         #end if
         #set vcf_identifier = re.sub('[^\s\w\-]', '_', str($i.element_identifier))
         ln -s '${i}' '$input_vcf_dir/${vcf_identifier}' &&