diff test-data/input_zc_vcf.vcf @ 4:da20c7c76d06 draft

Uploaded
author greg
date Thu, 17 Jun 2021 13:23:41 +0000
parents ee4ef1fc23c6
children
line wrap: on
line diff
--- a/test-data/input_zc_vcf.vcf	Sun Jan 03 16:06:33 2021 +0000
+++ b/test-data/input_zc_vcf.vcf	Thu Jun 17 13:23:41 2021 +0000
@@ -6,60 +6,6 @@
 ##phasing=none
 ##commandline="freebayes -E -1 -e 1 -u --strict-vcf -f /scratch/analysis_staging/a_script/vcf_test_files_sra_downloaded_2019-01-23/SRR1791698/NC_002945v4.fasta /scratch/analysis_staging/a_script/vcf_test_files_sra_downloaded_2019-01-23/SRR1791698/SRR1791698-nodup.bam --region NC_002945.4:0-100000
 ##filter="QUAL > 20
-##INFO=<ID=NS,Number=1,Type=Integer,Description="Number of samples with data">
-##INFO=<ID=DP,Number=1,Type=Integer,Description="Total read depth at the locus">
-##INFO=<ID=DPB,Number=1,Type=Float,Description="Total read depth per bp at the locus; bases in reads overlapping / bases in haplotype">
-##INFO=<ID=AC,Number=A,Type=Integer,Description="Total number of alternate alleles in called genotypes">
-##INFO=<ID=AN,Number=1,Type=Integer,Description="Total number of alleles in called genotypes">
-##INFO=<ID=AF,Number=A,Type=Float,Description="Estimated allele frequency in the range (0,1]">
-##INFO=<ID=RO,Number=1,Type=Integer,Description="Count of full observations of the reference haplotype.">
-##INFO=<ID=AO,Number=A,Type=Integer,Description="Count of full observations of this alternate haplotype.">
-##INFO=<ID=PRO,Number=1,Type=Float,Description="Reference allele observation count, with partial observations recorded fractionally">
-##INFO=<ID=PAO,Number=A,Type=Float,Description="Alternate allele observations, with partial observations recorded fractionally">
-##INFO=<ID=QR,Number=1,Type=Integer,Description="Reference allele quality sum in phred">
-##INFO=<ID=QA,Number=A,Type=Integer,Description="Alternate allele quality sum in phred">
-##INFO=<ID=PQR,Number=1,Type=Float,Description="Reference allele quality sum in phred for partial observations">
-##INFO=<ID=PQA,Number=A,Type=Float,Description="Alternate allele quality sum in phred for partial observations">
-##INFO=<ID=SRF,Number=1,Type=Integer,Description="Number of reference observations on the forward strand">
-##INFO=<ID=SRR,Number=1,Type=Integer,Description="Number of reference observations on the reverse strand">
-##INFO=<ID=SAF,Number=A,Type=Integer,Description="Number of alternate observations on the forward strand">
-##INFO=<ID=SAR,Number=A,Type=Integer,Description="Number of alternate observations on the reverse strand">
-##INFO=<ID=SRP,Number=1,Type=Float,Description="Strand balance probability for the reference allele: Phred-scaled upper-bounds estimate of the probability of observing the deviation between SRF and SRR given E(SRF/SRR) ~ 0.5, derived using Hoeffding's inequality">
-##INFO=<ID=SAP,Number=A,Type=Float,Description="Strand balance probability for the alternate allele: Phred-scaled upper-bounds estimate of the probability of observing the deviation between SAF and SAR given E(SAF/SAR) ~ 0.5, derived using Hoeffding's inequality">
-##INFO=<ID=AB,Number=A,Type=Float,Description="Allele balance at heterozygous sites: a number between 0 and 1 representing the ratio of reads showing the reference allele to all reads, considering only reads from individuals called as heterozygous">
-##INFO=<ID=ABP,Number=A,Type=Float,Description="Allele balance probability at heterozygous sites: Phred-scaled upper-bounds estimate of the probability of observing the deviation between ABR and ABA given E(ABR/ABA) ~ 0.5, derived using Hoeffding's inequality">
-##INFO=<ID=RUN,Number=A,Type=Integer,Description="Run length: the number of consecutive repeats of the alternate allele in the reference genome">
-##INFO=<ID=RPP,Number=A,Type=Float,Description="Read Placement Probability: Phred-scaled upper-bounds estimate of the probability of observing the deviation between RPL and RPR given E(RPL/RPR) ~ 0.5, derived using Hoeffding's inequality">
-##INFO=<ID=RPPR,Number=1,Type=Float,Description="Read Placement Probability for reference observations: Phred-scaled upper-bounds estimate of the probability of observing the deviation between RPL and RPR given E(RPL/RPR) ~ 0.5, derived using Hoeffding's inequality">
-##INFO=<ID=RPL,Number=A,Type=Float,Description="Reads Placed Left: number of reads supporting the alternate balanced to the left (5') of the alternate allele">
-##INFO=<ID=RPR,Number=A,Type=Float,Description="Reads Placed Right: number of reads supporting the alternate balanced to the right (3') of the alternate allele">
-##INFO=<ID=EPP,Number=A,Type=Float,Description="End Placement Probability: Phred-scaled upper-bounds estimate of the probability of observing the deviation between EL and ER given E(EL/ER) ~ 0.5, derived using Hoeffding's inequality">
-##INFO=<ID=EPPR,Number=1,Type=Float,Description="End Placement Probability for reference observations: Phred-scaled upper-bounds estimate of the probability of observing the deviation between EL and ER given E(EL/ER) ~ 0.5, derived using Hoeffding's inequality">
-##INFO=<ID=DPRA,Number=A,Type=Float,Description="Alternate allele depth ratio.  Ratio between depth in samples with each called alternate allele and those without.">
-##INFO=<ID=ODDS,Number=1,Type=Float,Description="The log odds ratio of the best genotype combination to the second-best.">
-##INFO=<ID=GTI,Number=1,Type=Integer,Description="Number of genotyping iterations required to reach convergence or bailout.">
-##INFO=<ID=TYPE,Number=A,Type=String,Description="The type of allele, either snp, mnp, ins, del, or complex.">
-##INFO=<ID=CIGAR,Number=A,Type=String,Description="The extended CIGAR representation of each alternate allele, with the exception that '=' is replaced by 'M' to ease VCF parsing.  Note that INDEL alleles do not have the first matched base (which is provided by default, per the spec) referred to by the CIGAR.">
-##INFO=<ID=NUMALT,Number=1,Type=Integer,Description="Number of unique non-reference alleles in called genotypes at this position.">
-##INFO=<ID=MEANALT,Number=A,Type=Float,Description="Mean number of unique non-reference allele observations per sample with the corresponding alternate alleles.">
-##INFO=<ID=LEN,Number=A,Type=Integer,Description="allele length">
-##INFO=<ID=MQM,Number=A,Type=Float,Description="Mean mapping quality of observed alternate alleles">
-##INFO=<ID=MQMR,Number=1,Type=Float,Description="Mean mapping quality of observed reference alleles">
-##INFO=<ID=PAIRED,Number=A,Type=Float,Description="Proportion of observed alternate alleles which are supported by properly paired read fragments">
-##INFO=<ID=PAIREDR,Number=1,Type=Float,Description="Proportion of observed reference alleles which are supported by properly paired read fragments">
-##INFO=<ID=MIN_DP,Number=1,Type=Integer,Description="Minimum depth in gVCF output block.">
-##INFO=<ID=END,Number=1,Type=Integer,Description="Last position (inclusive) in gVCF output record.">
-##INFO=<ID=technology.ILLUMINA,Number=A,Type=Float,Description="Fraction of observations supporting the alternate observed in reads from ILLUMINA">
-##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype">
-##FORMAT=<ID=GQ,Number=1,Type=Integer,Description="Genotype Quality, the Phred-scaled marginal (or unconditional) probability of the called genotype">
-##FORMAT=<ID=GL,Number=G,Type=Float,Description="Genotype Likelihood, log10-scaled likelihoods of the data given the called genotype for each possible genotype generated from the reference and alternate alleles given the sample ploidy">
-##FORMAT=<ID=DP,Number=1,Type=Integer,Description="Read Depth">
-##FORMAT=<ID=AD,Number=R,Type=Integer,Description="Number of observation for each allele">
-##FORMAT=<ID=RO,Number=1,Type=Integer,Description="Reference allele observation count">
-##FORMAT=<ID=QR,Number=1,Type=Integer,Description="Sum of quality of the reference observations">
-##FORMAT=<ID=AO,Number=A,Type=Integer,Description="Alternate allele observation count">
-##FORMAT=<ID=QA,Number=A,Type=Integer,Description="Sum of quality of the alternate observations">
-##FORMAT=<ID=MIN_DP,Number=1,Type=Integer,Description="Minimum depth in gVCF output block.">
 #CHROM	POS	ID	REF	ALT	QUAL	FILTER	INFO	FORMAT	SRR1791698
 NC_002945.4	1057	.	A	G	7624.7	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=262;CIGAR=1X;DP=265;DPB=265;DPRA=0;EPP=4.20378;EPPR=5.18177;GTI=0;LEN=1;MEANALT=2;MQ=60;MQMR=60;NS=1;NUMALT=1;ODDS=363.221;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=8526;QR=12;RO=1;RPL=140;RPP=5.69563;RPPR=5.18177;RPR=122;RUN=1;SAF=139;SAP=5.13204;SAR=123;SRF=0;SRP=5.18177;SRR=1;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:265:1,262:1:12:262:8526:-766.088,-78.0909,0
 NC_002945.4	4480	.	T	C	4142.4	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=144;CIGAR=1X;DP=145;DPB=145;DPRA=0;EPP=3.07062;EPPR=0;GTI=0;LEN=1;MEANALT=2;MQ=60;MQMR=0;NS=1;NUMALT=1;ODDS=204.232;PAIRED=0.993056;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=4647;QR=0;RO=0;RPL=79;RPP=5.96592;RPPR=0;RPR=65;RUN=1;SAF=72;SAP=3.0103;SAR=72;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:145:0,144:0:0:144:4647:-418.074,-43.3483,0
@@ -115,935 +61,8 @@
 NC_002945.4	29518	.	N	.	.	.	.	GT	./.
 NC_002945.4	29519	.	N	.	.	.	.	GT	./.
 NC_002945.4	29520	.	N	.	.	.	.	GT	./.
-NC_002945.4	29521	.	N	.	.	.	.	GT	./.
-NC_002945.4	29522	.	N	.	.	.	.	GT	./.
-NC_002945.4	29523	.	N	.	.	.	.	GT	./.
-NC_002945.4	29524	.	N	.	.	.	.	GT	./.
-NC_002945.4	29525	.	N	.	.	.	.	GT	./.
-NC_002945.4	29526	.	N	.	.	.	.	GT	./.
-NC_002945.4	29527	.	N	.	.	.	.	GT	./.
-NC_002945.4	29528	.	N	.	.	.	.	GT	./.
-NC_002945.4	29529	.	N	.	.	.	.	GT	./.
-NC_002945.4	29530	.	N	.	.	.	.	GT	./.
-NC_002945.4	29531	.	N	.	.	.	.	GT	./.
-NC_002945.4	29532	.	N	.	.	.	.	GT	./.
-NC_002945.4	29533	.	N	.	.	.	.	GT	./.
-NC_002945.4	29534	.	N	.	.	.	.	GT	./.
-NC_002945.4	29535	.	N	.	.	.	.	GT	./.
-NC_002945.4	29536	.	N	.	.	.	.	GT	./.
-NC_002945.4	29537	.	N	.	.	.	.	GT	./.
-NC_002945.4	29538	.	N	.	.	.	.	GT	./.
-NC_002945.4	29539	.	N	.	.	.	.	GT	./.
-NC_002945.4	29540	.	N	.	.	.	.	GT	./.
-NC_002945.4	29541	.	N	.	.	.	.	GT	./.
-NC_002945.4	29542	.	N	.	.	.	.	GT	./.
-NC_002945.4	29543	.	N	.	.	.	.	GT	./.
-NC_002945.4	29544	.	N	.	.	.	.	GT	./.
-NC_002945.4	29545	.	N	.	.	.	.	GT	./.
-NC_002945.4	29546	.	N	.	.	.	.	GT	./.
-NC_002945.4	29547	.	N	.	.	.	.	GT	./.
-NC_002945.4	29548	.	N	.	.	.	.	GT	./.
-NC_002945.4	29549	.	N	.	.	.	.	GT	./.
-NC_002945.4	29550	.	N	.	.	.	.	GT	./.
-NC_002945.4	29551	.	N	.	.	.	.	GT	./.
-NC_002945.4	29552	.	N	.	.	.	.	GT	./.
-NC_002945.4	29553	.	N	.	.	.	.	GT	./.
-NC_002945.4	29554	.	N	.	.	.	.	GT	./.
-NC_002945.4	29555	.	N	.	.	.	.	GT	./.
-NC_002945.4	29556	.	N	.	.	.	.	GT	./.
-NC_002945.4	29557	.	N	.	.	.	.	GT	./.
-NC_002945.4	29558	.	N	.	.	.	.	GT	./.
-NC_002945.4	29559	.	N	.	.	.	.	GT	./.
-NC_002945.4	29560	.	N	.	.	.	.	GT	./.
-NC_002945.4	29561	.	N	.	.	.	.	GT	./.
-NC_002945.4	29562	.	N	.	.	.	.	GT	./.
-NC_002945.4	29563	.	N	.	.	.	.	GT	./.
-NC_002945.4	29564	.	N	.	.	.	.	GT	./.
-NC_002945.4	29565	.	N	.	.	.	.	GT	./.
-NC_002945.4	29566	.	N	.	.	.	.	GT	./.
-NC_002945.4	29567	.	N	.	.	.	.	GT	./.
-NC_002945.4	29568	.	N	.	.	.	.	GT	./.
-NC_002945.4	29569	.	N	.	.	.	.	GT	./.
-NC_002945.4	29570	.	N	.	.	.	.	GT	./.
-NC_002945.4	29571	.	N	.	.	.	.	GT	./.
-NC_002945.4	29572	.	N	.	.	.	.	GT	./.
-NC_002945.4	29573	.	N	.	.	.	.	GT	./.
-NC_002945.4	29574	.	N	.	.	.	.	GT	./.
-NC_002945.4	29575	.	N	.	.	.	.	GT	./.
-NC_002945.4	29576	.	N	.	.	.	.	GT	./.
-NC_002945.4	29577	.	N	.	.	.	.	GT	./.
-NC_002945.4	29578	.	N	.	.	.	.	GT	./.
-NC_002945.4	29579	.	N	.	.	.	.	GT	./.
-NC_002945.4	29580	.	N	.	.	.	.	GT	./.
-NC_002945.4	29581	.	N	.	.	.	.	GT	./.
-NC_002945.4	29582	.	N	.	.	.	.	GT	./.
-NC_002945.4	29583	.	N	.	.	.	.	GT	./.
-NC_002945.4	29584	.	N	.	.	.	.	GT	./.
-NC_002945.4	29585	.	N	.	.	.	.	GT	./.
-NC_002945.4	29586	.	N	.	.	.	.	GT	./.
-NC_002945.4	29587	.	N	.	.	.	.	GT	./.
-NC_002945.4	29588	.	N	.	.	.	.	GT	./.
-NC_002945.4	29589	.	N	.	.	.	.	GT	./.
-NC_002945.4	29590	.	N	.	.	.	.	GT	./.
-NC_002945.4	29591	.	N	.	.	.	.	GT	./.
-NC_002945.4	29592	.	N	.	.	.	.	GT	./.
-NC_002945.4	29593	.	N	.	.	.	.	GT	./.
-NC_002945.4	29594	.	N	.	.	.	.	GT	./.
-NC_002945.4	29595	.	N	.	.	.	.	GT	./.
-NC_002945.4	29596	.	N	.	.	.	.	GT	./.
-NC_002945.4	29597	.	N	.	.	.	.	GT	./.
-NC_002945.4	29598	.	N	.	.	.	.	GT	./.
-NC_002945.4	29599	.	N	.	.	.	.	GT	./.
-NC_002945.4	29600	.	N	.	.	.	.	GT	./.
-NC_002945.4	29601	.	N	.	.	.	.	GT	./.
-NC_002945.4	29602	.	N	.	.	.	.	GT	./.
-NC_002945.4	29603	.	N	.	.	.	.	GT	./.
-NC_002945.4	29604	.	N	.	.	.	.	GT	./.
-NC_002945.4	29605	.	N	.	.	.	.	GT	./.
-NC_002945.4	29606	.	N	.	.	.	.	GT	./.
-NC_002945.4	29607	.	N	.	.	.	.	GT	./.
-NC_002945.4	29608	.	N	.	.	.	.	GT	./.
-NC_002945.4	29609	.	N	.	.	.	.	GT	./.
-NC_002945.4	29610	.	N	.	.	.	.	GT	./.
-NC_002945.4	29611	.	N	.	.	.	.	GT	./.
-NC_002945.4	29612	.	N	.	.	.	.	GT	./.
-NC_002945.4	29613	.	N	.	.	.	.	GT	./.
-NC_002945.4	29614	.	N	.	.	.	.	GT	./.
-NC_002945.4	29615	.	N	.	.	.	.	GT	./.
-NC_002945.4	29616	.	N	.	.	.	.	GT	./.
-NC_002945.4	29617	.	N	.	.	.	.	GT	./.
-NC_002945.4	29618	.	N	.	.	.	.	GT	./.
-NC_002945.4	29619	.	N	.	.	.	.	GT	./.
-NC_002945.4	29620	.	N	.	.	.	.	GT	./.
-NC_002945.4	29621	.	N	.	.	.	.	GT	./.
-NC_002945.4	29622	.	N	.	.	.	.	GT	./.
-NC_002945.4	29623	.	N	.	.	.	.	GT	./.
-NC_002945.4	29624	.	N	.	.	.	.	GT	./.
-NC_002945.4	29625	.	N	.	.	.	.	GT	./.
-NC_002945.4	29626	.	N	.	.	.	.	GT	./.
-NC_002945.4	29627	.	N	.	.	.	.	GT	./.
-NC_002945.4	29628	.	N	.	.	.	.	GT	./.
-NC_002945.4	29629	.	N	.	.	.	.	GT	./.
-NC_002945.4	29630	.	N	.	.	.	.	GT	./.
-NC_002945.4	29631	.	N	.	.	.	.	GT	./.
-NC_002945.4	29632	.	N	.	.	.	.	GT	./.
-NC_002945.4	29633	.	N	.	.	.	.	GT	./.
-NC_002945.4	29634	.	N	.	.	.	.	GT	./.
-NC_002945.4	29635	.	N	.	.	.	.	GT	./.
-NC_002945.4	29636	.	N	.	.	.	.	GT	./.
-NC_002945.4	29637	.	N	.	.	.	.	GT	./.
-NC_002945.4	29638	.	N	.	.	.	.	GT	./.
-NC_002945.4	29639	.	N	.	.	.	.	GT	./.
-NC_002945.4	29640	.	N	.	.	.	.	GT	./.
-NC_002945.4	29641	.	N	.	.	.	.	GT	./.
-NC_002945.4	29642	.	N	.	.	.	.	GT	./.
-NC_002945.4	29643	.	N	.	.	.	.	GT	./.
-NC_002945.4	29644	.	N	.	.	.	.	GT	./.
-NC_002945.4	29645	.	N	.	.	.	.	GT	./.
-NC_002945.4	29646	.	N	.	.	.	.	GT	./.
-NC_002945.4	29647	.	N	.	.	.	.	GT	./.
-NC_002945.4	29648	.	N	.	.	.	.	GT	./.
-NC_002945.4	29649	.	N	.	.	.	.	GT	./.
-NC_002945.4	29650	.	N	.	.	.	.	GT	./.
-NC_002945.4	29651	.	N	.	.	.	.	GT	./.
-NC_002945.4	29652	.	N	.	.	.	.	GT	./.
-NC_002945.4	29653	.	N	.	.	.	.	GT	./.
-NC_002945.4	29654	.	N	.	.	.	.	GT	./.
-NC_002945.4	29655	.	N	.	.	.	.	GT	./.
-NC_002945.4	29656	.	N	.	.	.	.	GT	./.
-NC_002945.4	29657	.	N	.	.	.	.	GT	./.
-NC_002945.4	29658	.	N	.	.	.	.	GT	./.
-NC_002945.4	29659	.	N	.	.	.	.	GT	./.
-NC_002945.4	29660	.	N	.	.	.	.	GT	./.
-NC_002945.4	29661	.	N	.	.	.	.	GT	./.
-NC_002945.4	29662	.	N	.	.	.	.	GT	./.
-NC_002945.4	29663	.	N	.	.	.	.	GT	./.
-NC_002945.4	29664	.	N	.	.	.	.	GT	./.
-NC_002945.4	29665	.	N	.	.	.	.	GT	./.
-NC_002945.4	29666	.	N	.	.	.	.	GT	./.
-NC_002945.4	29667	.	N	.	.	.	.	GT	./.
-NC_002945.4	29668	.	N	.	.	.	.	GT	./.
-NC_002945.4	29669	.	N	.	.	.	.	GT	./.
-NC_002945.4	29670	.	N	.	.	.	.	GT	./.
-NC_002945.4	29671	.	N	.	.	.	.	GT	./.
-NC_002945.4	29672	.	N	.	.	.	.	GT	./.
-NC_002945.4	29673	.	N	.	.	.	.	GT	./.
-NC_002945.4	29674	.	N	.	.	.	.	GT	./.
-NC_002945.4	29675	.	N	.	.	.	.	GT	./.
-NC_002945.4	29676	.	N	.	.	.	.	GT	./.
-NC_002945.4	29677	.	N	.	.	.	.	GT	./.
-NC_002945.4	29678	.	N	.	.	.	.	GT	./.
-NC_002945.4	29679	.	N	.	.	.	.	GT	./.
-NC_002945.4	29680	.	N	.	.	.	.	GT	./.
-NC_002945.4	29681	.	N	.	.	.	.	GT	./.
-NC_002945.4	29682	.	N	.	.	.	.	GT	./.
-NC_002945.4	29683	.	N	.	.	.	.	GT	./.
-NC_002945.4	29684	.	N	.	.	.	.	GT	./.
-NC_002945.4	29685	.	N	.	.	.	.	GT	./.
-NC_002945.4	29686	.	N	.	.	.	.	GT	./.
-NC_002945.4	29687	.	N	.	.	.	.	GT	./.
-NC_002945.4	29688	.	N	.	.	.	.	GT	./.
-NC_002945.4	29689	.	N	.	.	.	.	GT	./.
-NC_002945.4	29690	.	N	.	.	.	.	GT	./.
-NC_002945.4	29691	.	N	.	.	.	.	GT	./.
-NC_002945.4	29692	.	N	.	.	.	.	GT	./.
-NC_002945.4	29693	.	N	.	.	.	.	GT	./.
-NC_002945.4	29694	.	N	.	.	.	.	GT	./.
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-NC_002945.4	29699	.	N	.	.	.	.	GT	./.
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-NC_002945.4	29708	.	N	.	.	.	.	GT	./.
-NC_002945.4	29709	.	N	.	.	.	.	GT	./.
-NC_002945.4	29710	.	N	.	.	.	.	GT	./.
-NC_002945.4	29711	.	N	.	.	.	.	GT	./.
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-NC_002945.4	29720	.	N	.	.	.	.	GT	./.
-NC_002945.4	29721	.	N	.	.	.	.	GT	./.
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-NC_002945.4	29723	.	N	.	.	.	.	GT	./.
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-NC_002945.4	29727	.	N	.	.	.	.	GT	./.
-NC_002945.4	29728	.	N	.	.	.	.	GT	./.
-NC_002945.4	29729	.	N	.	.	.	.	GT	./.
-NC_002945.4	29730	.	N	.	.	.	.	GT	./.
-NC_002945.4	29731	.	N	.	.	.	.	GT	./.
-NC_002945.4	29732	.	N	.	.	.	.	GT	./.
-NC_002945.4	29733	.	N	.	.	.	.	GT	./.
-NC_002945.4	29734	.	N	.	.	.	.	GT	./.
-NC_002945.4	29735	.	N	.	.	.	.	GT	./.
-NC_002945.4	29736	.	N	.	.	.	.	GT	./.
-NC_002945.4	29737	.	N	.	.	.	.	GT	./.
-NC_002945.4	29738	.	N	.	.	.	.	GT	./.
-NC_002945.4	29739	.	N	.	.	.	.	GT	./.
-NC_002945.4	29740	.	N	.	.	.	.	GT	./.
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-NC_002945.4	29742	.	N	.	.	.	.	GT	./.
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-NC_002945.4	29750	.	N	.	.	.	.	GT	./.
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-NC_002945.4	29752	.	N	.	.	.	.	GT	./.
-NC_002945.4	29753	.	N	.	.	.	.	GT	./.
-NC_002945.4	29754	.	N	.	.	.	.	GT	./.
-NC_002945.4	29755	.	N	.	.	.	.	GT	./.
-NC_002945.4	29756	.	N	.	.	.	.	GT	./.
-NC_002945.4	29757	.	N	.	.	.	.	GT	./.
-NC_002945.4	29758	.	N	.	.	.	.	GT	./.
-NC_002945.4	29759	.	N	.	.	.	.	GT	./.
-NC_002945.4	29760	.	N	.	.	.	.	GT	./.
-NC_002945.4	29761	.	N	.	.	.	.	GT	./.
-NC_002945.4	29762	.	N	.	.	.	.	GT	./.
-NC_002945.4	29763	.	N	.	.	.	.	GT	./.
-NC_002945.4	29764	.	N	.	.	.	.	GT	./.
-NC_002945.4	29765	.	N	.	.	.	.	GT	./.
-NC_002945.4	29766	.	N	.	.	.	.	GT	./.
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-NC_002945.4	29768	.	N	.	.	.	.	GT	./.
-NC_002945.4	29769	.	N	.	.	.	.	GT	./.
-NC_002945.4	29770	.	N	.	.	.	.	GT	./.
-NC_002945.4	29771	.	N	.	.	.	.	GT	./.
-NC_002945.4	29772	.	N	.	.	.	.	GT	./.
-NC_002945.4	29773	.	N	.	.	.	.	GT	./.
-NC_002945.4	29774	.	N	.	.	.	.	GT	./.
-NC_002945.4	29775	.	N	.	.	.	.	GT	./.
-NC_002945.4	29776	.	N	.	.	.	.	GT	./.
-NC_002945.4	29777	.	N	.	.	.	.	GT	./.
-NC_002945.4	29778	.	N	.	.	.	.	GT	./.
-NC_002945.4	29779	.	N	.	.	.	.	GT	./.
-NC_002945.4	29780	.	N	.	.	.	.	GT	./.
-NC_002945.4	29781	.	N	.	.	.	.	GT	./.
-NC_002945.4	29782	.	N	.	.	.	.	GT	./.
-NC_002945.4	29783	.	N	.	.	.	.	GT	./.
-NC_002945.4	29784	.	N	.	.	.	.	GT	./.
-NC_002945.4	29785	.	N	.	.	.	.	GT	./.
-NC_002945.4	29786	.	N	.	.	.	.	GT	./.
-NC_002945.4	29787	.	N	.	.	.	.	GT	./.
-NC_002945.4	29788	.	N	.	.	.	.	GT	./.
-NC_002945.4	29789	.	N	.	.	.	.	GT	./.
-NC_002945.4	29790	.	N	.	.	.	.	GT	./.
-NC_002945.4	29791	.	N	.	.	.	.	GT	./.
-NC_002945.4	29792	.	N	.	.	.	.	GT	./.
-NC_002945.4	29793	.	N	.	.	.	.	GT	./.
-NC_002945.4	29794	.	N	.	.	.	.	GT	./.
-NC_002945.4	29795	.	N	.	.	.	.	GT	./.
-NC_002945.4	29796	.	N	.	.	.	.	GT	./.
-NC_002945.4	29797	.	N	.	.	.	.	GT	./.
-NC_002945.4	29798	.	N	.	.	.	.	GT	./.
-NC_002945.4	29799	.	N	.	.	.	.	GT	./.
-NC_002945.4	29800	.	N	.	.	.	.	GT	./.
-NC_002945.4	29801	.	N	.	.	.	.	GT	./.
-NC_002945.4	29802	.	N	.	.	.	.	GT	./.
-NC_002945.4	29803	.	N	.	.	.	.	GT	./.
-NC_002945.4	29804	.	N	.	.	.	.	GT	./.
-NC_002945.4	29805	.	N	.	.	.	.	GT	./.
-NC_002945.4	29806	.	N	.	.	.	.	GT	./.
-NC_002945.4	29807	.	N	.	.	.	.	GT	./.
-NC_002945.4	29808	.	N	.	.	.	.	GT	./.
-NC_002945.4	29809	.	N	.	.	.	.	GT	./.
-NC_002945.4	29810	.	N	.	.	.	.	GT	./.
-NC_002945.4	29811	.	N	.	.	.	.	GT	./.
-NC_002945.4	29812	.	N	.	.	.	.	GT	./.
-NC_002945.4	29813	.	N	.	.	.	.	GT	./.
-NC_002945.4	29814	.	N	.	.	.	.	GT	./.
-NC_002945.4	29815	.	N	.	.	.	.	GT	./.
-NC_002945.4	29816	.	N	.	.	.	.	GT	./.
-NC_002945.4	29817	.	N	.	.	.	.	GT	./.
-NC_002945.4	29818	.	N	.	.	.	.	GT	./.
-NC_002945.4	29819	.	N	.	.	.	.	GT	./.
-NC_002945.4	29820	.	N	.	.	.	.	GT	./.
-NC_002945.4	29821	.	N	.	.	.	.	GT	./.
-NC_002945.4	29822	.	N	.	.	.	.	GT	./.
-NC_002945.4	29823	.	N	.	.	.	.	GT	./.
-NC_002945.4	29824	.	N	.	.	.	.	GT	./.
-NC_002945.4	29825	.	N	.	.	.	.	GT	./.
-NC_002945.4	29826	.	N	.	.	.	.	GT	./.
-NC_002945.4	29827	.	N	.	.	.	.	GT	./.
-NC_002945.4	29828	.	N	.	.	.	.	GT	./.
-NC_002945.4	29829	.	N	.	.	.	.	GT	./.
-NC_002945.4	29830	.	N	.	.	.	.	GT	./.
-NC_002945.4	29831	.	N	.	.	.	.	GT	./.
-NC_002945.4	29832	.	N	.	.	.	.	GT	./.
-NC_002945.4	29833	.	N	.	.	.	.	GT	./.
-NC_002945.4	29834	.	N	.	.	.	.	GT	./.
-NC_002945.4	29835	.	N	.	.	.	.	GT	./.
-NC_002945.4	29836	.	N	.	.	.	.	GT	./.
-NC_002945.4	29837	.	N	.	.	.	.	GT	./.
-NC_002945.4	29838	.	N	.	.	.	.	GT	./.
-NC_002945.4	29839	.	N	.	.	.	.	GT	./.
-NC_002945.4	29840	.	N	.	.	.	.	GT	./.
-NC_002945.4	29841	.	N	.	.	.	.	GT	./.
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-NC_002945.4	29858	.	N	.	.	.	.	GT	./.
-NC_002945.4	29859	.	N	.	.	.	.	GT	./.
-NC_002945.4	29860	.	N	.	.	.	.	GT	./.
-NC_002945.4	29861	.	N	.	.	.	.	GT	./.
-NC_002945.4	29862	.	N	.	.	.	.	GT	./.
-NC_002945.4	29863	.	N	.	.	.	.	GT	./.
-NC_002945.4	29864	.	N	.	.	.	.	GT	./.
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-NC_002945.4	29866	.	N	.	.	.	.	GT	./.
-NC_002945.4	29867	.	N	.	.	.	.	GT	./.
-NC_002945.4	29868	.	N	.	.	.	.	GT	./.
-NC_002945.4	29869	.	N	.	.	.	.	GT	./.
-NC_002945.4	29870	.	N	.	.	.	.	GT	./.
-NC_002945.4	29871	.	N	.	.	.	.	GT	./.
-NC_002945.4	29872	.	N	.	.	.	.	GT	./.
-NC_002945.4	29873	.	N	.	.	.	.	GT	./.
-NC_002945.4	29874	.	N	.	.	.	.	GT	./.
-NC_002945.4	29875	.	N	.	.	.	.	GT	./.
-NC_002945.4	29876	.	N	.	.	.	.	GT	./.
-NC_002945.4	29877	.	N	.	.	.	.	GT	./.
-NC_002945.4	29878	.	N	.	.	.	.	GT	./.
-NC_002945.4	29879	.	N	.	.	.	.	GT	./.
-NC_002945.4	29880	.	N	.	.	.	.	GT	./.
-NC_002945.4	29881	.	N	.	.	.	.	GT	./.
-NC_002945.4	29882	.	N	.	.	.	.	GT	./.
-NC_002945.4	29883	.	N	.	.	.	.	GT	./.
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-NC_002945.4	29888	.	N	.	.	.	.	GT	./.
-NC_002945.4	29889	.	N	.	.	.	.	GT	./.
-NC_002945.4	29890	.	N	.	.	.	.	GT	./.
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-NC_002945.4	29892	.	N	.	.	.	.	GT	./.
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-NC_002945.4	29894	.	N	.	.	.	.	GT	./.
-NC_002945.4	29895	.	N	.	.	.	.	GT	./.
-NC_002945.4	29896	.	N	.	.	.	.	GT	./.
-NC_002945.4	29897	.	N	.	.	.	.	GT	./.
-NC_002945.4	29898	.	N	.	.	.	.	GT	./.
-NC_002945.4	29899	.	N	.	.	.	.	GT	./.
-NC_002945.4	29900	.	N	.	.	.	.	GT	./.
-NC_002945.4	29901	.	N	.	.	.	.	GT	./.
-NC_002945.4	29902	.	N	.	.	.	.	GT	./.
-NC_002945.4	29903	.	N	.	.	.	.	GT	./.
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-NC_002945.4	29906	.	N	.	.	.	.	GT	./.
-NC_002945.4	29907	.	N	.	.	.	.	GT	./.
-NC_002945.4	29908	.	N	.	.	.	.	GT	./.
-NC_002945.4	29909	.	N	.	.	.	.	GT	./.
-NC_002945.4	29910	.	N	.	.	.	.	GT	./.
-NC_002945.4	29911	.	N	.	.	.	.	GT	./.
-NC_002945.4	29912	.	N	.	.	.	.	GT	./.
-NC_002945.4	29913	.	N	.	.	.	.	GT	./.
-NC_002945.4	29914	.	N	.	.	.	.	GT	./.
-NC_002945.4	29915	.	N	.	.	.	.	GT	./.
-NC_002945.4	29916	.	N	.	.	.	.	GT	./.
-NC_002945.4	29917	.	N	.	.	.	.	GT	./.
-NC_002945.4	29918	.	N	.	.	.	.	GT	./.
-NC_002945.4	29919	.	N	.	.	.	.	GT	./.
-NC_002945.4	29920	.	N	.	.	.	.	GT	./.
-NC_002945.4	29921	.	N	.	.	.	.	GT	./.
-NC_002945.4	29922	.	N	.	.	.	.	GT	./.
-NC_002945.4	29923	.	N	.	.	.	.	GT	./.
-NC_002945.4	29924	.	N	.	.	.	.	GT	./.
-NC_002945.4	29925	.	N	.	.	.	.	GT	./.
-NC_002945.4	29926	.	N	.	.	.	.	GT	./.
-NC_002945.4	29927	.	N	.	.	.	.	GT	./.
-NC_002945.4	29928	.	N	.	.	.	.	GT	./.
-NC_002945.4	29929	.	N	.	.	.	.	GT	./.
-NC_002945.4	29930	.	N	.	.	.	.	GT	./.
-NC_002945.4	29931	.	N	.	.	.	.	GT	./.
-NC_002945.4	29932	.	N	.	.	.	.	GT	./.
-NC_002945.4	29933	.	N	.	.	.	.	GT	./.
-NC_002945.4	29934	.	N	.	.	.	.	GT	./.
-NC_002945.4	29935	.	N	.	.	.	.	GT	./.
-NC_002945.4	29936	.	N	.	.	.	.	GT	./.
-NC_002945.4	29937	.	N	.	.	.	.	GT	./.
-NC_002945.4	29938	.	N	.	.	.	.	GT	./.
-NC_002945.4	29939	.	N	.	.	.	.	GT	./.
-NC_002945.4	29940	.	N	.	.	.	.	GT	./.
-NC_002945.4	29941	.	N	.	.	.	.	GT	./.
-NC_002945.4	29942	.	N	.	.	.	.	GT	./.
-NC_002945.4	29943	.	N	.	.	.	.	GT	./.
-NC_002945.4	29944	.	N	.	.	.	.	GT	./.
-NC_002945.4	29945	.	N	.	.	.	.	GT	./.
-NC_002945.4	29946	.	N	.	.	.	.	GT	./.
-NC_002945.4	29947	.	N	.	.	.	.	GT	./.
-NC_002945.4	29948	.	N	.	.	.	.	GT	./.
-NC_002945.4	29949	.	N	.	.	.	.	GT	./.
-NC_002945.4	29950	.	N	.	.	.	.	GT	./.
-NC_002945.4	29951	.	N	.	.	.	.	GT	./.
-NC_002945.4	29952	.	N	.	.	.	.	GT	./.
-NC_002945.4	29953	.	N	.	.	.	.	GT	./.
-NC_002945.4	29954	.	N	.	.	.	.	GT	./.
-NC_002945.4	29955	.	N	.	.	.	.	GT	./.
-NC_002945.4	29956	.	N	.	.	.	.	GT	./.
-NC_002945.4	29957	.	N	.	.	.	.	GT	./.
-NC_002945.4	29958	.	N	.	.	.	.	GT	./.
-NC_002945.4	29959	.	N	.	.	.	.	GT	./.
-NC_002945.4	29960	.	N	.	.	.	.	GT	./.
-NC_002945.4	29961	.	N	.	.	.	.	GT	./.
-NC_002945.4	29962	.	N	.	.	.	.	GT	./.
-NC_002945.4	29963	.	N	.	.	.	.	GT	./.
-NC_002945.4	29964	.	N	.	.	.	.	GT	./.
-NC_002945.4	29965	.	N	.	.	.	.	GT	./.
-NC_002945.4	29966	.	N	.	.	.	.	GT	./.
-NC_002945.4	29967	.	N	.	.	.	.	GT	./.
-NC_002945.4	29968	.	N	.	.	.	.	GT	./.
-NC_002945.4	29969	.	N	.	.	.	.	GT	./.
-NC_002945.4	29970	.	N	.	.	.	.	GT	./.
-NC_002945.4	29971	.	N	.	.	.	.	GT	./.
-NC_002945.4	29972	.	N	.	.	.	.	GT	./.
-NC_002945.4	29973	.	N	.	.	.	.	GT	./.
-NC_002945.4	29974	.	N	.	.	.	.	GT	./.
-NC_002945.4	29975	.	N	.	.	.	.	GT	./.
-NC_002945.4	29976	.	N	.	.	.	.	GT	./.
-NC_002945.4	29977	.	N	.	.	.	.	GT	./.
-NC_002945.4	29978	.	N	.	.	.	.	GT	./.
-NC_002945.4	29979	.	N	.	.	.	.	GT	./.
-NC_002945.4	29980	.	N	.	.	.	.	GT	./.
-NC_002945.4	29981	.	N	.	.	.	.	GT	./.
-NC_002945.4	29982	.	N	.	.	.	.	GT	./.
-NC_002945.4	29983	.	N	.	.	.	.	GT	./.
-NC_002945.4	29984	.	N	.	.	.	.	GT	./.
-NC_002945.4	29985	.	N	.	.	.	.	GT	./.
-NC_002945.4	29986	.	N	.	.	.	.	GT	./.
-NC_002945.4	29987	.	N	.	.	.	.	GT	./.
-NC_002945.4	29988	.	N	.	.	.	.	GT	./.
-NC_002945.4	29989	.	N	.	.	.	.	GT	./.
-NC_002945.4	29990	.	N	.	.	.	.	GT	./.
-NC_002945.4	29991	.	N	.	.	.	.	GT	./.
-NC_002945.4	29992	.	N	.	.	.	.	GT	./.
-NC_002945.4	29993	.	N	.	.	.	.	GT	./.
-NC_002945.4	29994	.	N	.	.	.	.	GT	./.
-NC_002945.4	29995	.	N	.	.	.	.	GT	./.
-NC_002945.4	29996	.	N	.	.	.	.	GT	./.
-NC_002945.4	29997	.	N	.	.	.	.	GT	./.
-NC_002945.4	29998	.	N	.	.	.	.	GT	./.
-NC_002945.4	29999	.	N	.	.	.	.	GT	./.
-NC_002945.4	30000	.	N	.	.	.	.	GT	./.
-NC_002945.4	30001	.	N	.	.	.	.	GT	./.
-NC_002945.4	30002	.	N	.	.	.	.	GT	./.
-NC_002945.4	30003	.	N	.	.	.	.	GT	./.
-NC_002945.4	30004	.	N	.	.	.	.	GT	./.
-NC_002945.4	30005	.	N	.	.	.	.	GT	./.
-NC_002945.4	30006	.	N	.	.	.	.	GT	./.
-NC_002945.4	30007	.	N	.	.	.	.	GT	./.
-NC_002945.4	30008	.	N	.	.	.	.	GT	./.
-NC_002945.4	30009	.	N	.	.	.	.	GT	./.
-NC_002945.4	30010	.	N	.	.	.	.	GT	./.
-NC_002945.4	30011	.	N	.	.	.	.	GT	./.
-NC_002945.4	30012	.	N	.	.	.	.	GT	./.
-NC_002945.4	30013	.	N	.	.	.	.	GT	./.
-NC_002945.4	30014	.	N	.	.	.	.	GT	./.
-NC_002945.4	30015	.	N	.	.	.	.	GT	./.
-NC_002945.4	30016	.	N	.	.	.	.	GT	./.
-NC_002945.4	30017	.	N	.	.	.	.	GT	./.
-NC_002945.4	30018	.	N	.	.	.	.	GT	./.
-NC_002945.4	30019	.	N	.	.	.	.	GT	./.
-NC_002945.4	30020	.	N	.	.	.	.	GT	./.
-NC_002945.4	30021	.	N	.	.	.	.	GT	./.
-NC_002945.4	30022	.	N	.	.	.	.	GT	./.
-NC_002945.4	30023	.	N	.	.	.	.	GT	./.
-NC_002945.4	30024	.	N	.	.	.	.	GT	./.
-NC_002945.4	30025	.	N	.	.	.	.	GT	./.
-NC_002945.4	30026	.	N	.	.	.	.	GT	./.
-NC_002945.4	30027	.	N	.	.	.	.	GT	./.
-NC_002945.4	30028	.	N	.	.	.	.	GT	./.
-NC_002945.4	30029	.	N	.	.	.	.	GT	./.
-NC_002945.4	30030	.	N	.	.	.	.	GT	./.
-NC_002945.4	30031	.	N	.	.	.	.	GT	./.
-NC_002945.4	30032	.	N	.	.	.	.	GT	./.
-NC_002945.4	30033	.	N	.	.	.	.	GT	./.
-NC_002945.4	30034	.	N	.	.	.	.	GT	./.
-NC_002945.4	30035	.	N	.	.	.	.	GT	./.
-NC_002945.4	30036	.	N	.	.	.	.	GT	./.
-NC_002945.4	30037	.	N	.	.	.	.	GT	./.
-NC_002945.4	30038	.	N	.	.	.	.	GT	./.
-NC_002945.4	30039	.	N	.	.	.	.	GT	./.
-NC_002945.4	30040	.	N	.	.	.	.	GT	./.
-NC_002945.4	30041	.	N	.	.	.	.	GT	./.
-NC_002945.4	30042	.	N	.	.	.	.	GT	./.
-NC_002945.4	30043	.	N	.	.	.	.	GT	./.
-NC_002945.4	30044	.	N	.	.	.	.	GT	./.
-NC_002945.4	30045	.	N	.	.	.	.	GT	./.
-NC_002945.4	30046	.	N	.	.	.	.	GT	./.
-NC_002945.4	30047	.	N	.	.	.	.	GT	./.
-NC_002945.4	30048	.	N	.	.	.	.	GT	./.
-NC_002945.4	30049	.	N	.	.	.	.	GT	./.
-NC_002945.4	30050	.	N	.	.	.	.	GT	./.
-NC_002945.4	30051	.	N	.	.	.	.	GT	./.
-NC_002945.4	30052	.	N	.	.	.	.	GT	./.
-NC_002945.4	30053	.	N	.	.	.	.	GT	./.
-NC_002945.4	30054	.	N	.	.	.	.	GT	./.
-NC_002945.4	30055	.	N	.	.	.	.	GT	./.
-NC_002945.4	30056	.	N	.	.	.	.	GT	./.
-NC_002945.4	30057	.	N	.	.	.	.	GT	./.
-NC_002945.4	30058	.	N	.	.	.	.	GT	./.
-NC_002945.4	30059	.	N	.	.	.	.	GT	./.
-NC_002945.4	30060	.	N	.	.	.	.	GT	./.
-NC_002945.4	30061	.	N	.	.	.	.	GT	./.
-NC_002945.4	30062	.	N	.	.	.	.	GT	./.
-NC_002945.4	30063	.	N	.	.	.	.	GT	./.
-NC_002945.4	30064	.	N	.	.	.	.	GT	./.
-NC_002945.4	30065	.	N	.	.	.	.	GT	./.
-NC_002945.4	30066	.	N	.	.	.	.	GT	./.
-NC_002945.4	30067	.	N	.	.	.	.	GT	./.
-NC_002945.4	30068	.	N	.	.	.	.	GT	./.
-NC_002945.4	30069	.	N	.	.	.	.	GT	./.
-NC_002945.4	30070	.	N	.	.	.	.	GT	./.
-NC_002945.4	30071	.	N	.	.	.	.	GT	./.
-NC_002945.4	30072	.	N	.	.	.	.	GT	./.
-NC_002945.4	30073	.	N	.	.	.	.	GT	./.
-NC_002945.4	30074	.	N	.	.	.	.	GT	./.
-NC_002945.4	30075	.	N	.	.	.	.	GT	./.
-NC_002945.4	30076	.	N	.	.	.	.	GT	./.
-NC_002945.4	30077	.	N	.	.	.	.	GT	./.
-NC_002945.4	30078	.	N	.	.	.	.	GT	./.
-NC_002945.4	30079	.	N	.	.	.	.	GT	./.
-NC_002945.4	30080	.	N	.	.	.	.	GT	./.
-NC_002945.4	30081	.	N	.	.	.	.	GT	./.
-NC_002945.4	30082	.	N	.	.	.	.	GT	./.
-NC_002945.4	33788	.	A	G	2948.3	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=104;CIGAR=1X;DP=105;DPB=105;DPRA=0;EPP=11.3621;EPPR=5.18177;GTI=0;LEN=1;MEANALT=1;MQ=60;MQMR=60;NS=1;NUMALT=1;ODDS=144.138;PAIRED=0.990385;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3576;QR=15;RO=1;RPL=47;RPP=5.09825;RPPR=5.18177;RPR=57;RUN=1;SAF=99;SAP=187.502;SAR=5;SRF=0;SRP=5.18177;SRR=1;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:105:1,104:1:15:104:3576:-320.525,-30.1082,0
-NC_002945.4	41228	.	A	C	5830.59	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=198;CIGAR=1X;DP=205;DPB=205;DPRA=0;EPP=15.6882;EPPR=18.2106;GTI=0;LEN=1;MEANALT=1;MQ=60;MQMR=60;NS=1;NUMALT=1;ODDS=254.088;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=6570;QR=98;RO=7;RPL=91;RPP=5.81786;RPPR=18.2106;RPR=107;RUN=1;SAF=107;SAP=5.81786;SAR=91;SRF=0;SRP=18.2106;SRR=7;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:205:7,198:7:98:198:6570:-582.305,-52.7512,0
-NC_002945.4	41437	.	T	C	6677.87	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=220;CIGAR=1X;DP=221;DPB=221;DPRA=0;EPP=3.642;EPPR=0;GTI=0;LEN=1;MEANALT=2;MQ=60;MQMR=0;NS=1;NUMALT=1;ODDS=309.59;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=7473;QR=0;RO=0;RPL=124;RPP=10.7486;RPPR=0;RPR=96;RUN=1;SAF=112;SAP=3.16823;SAR=108;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:221:0,220:0:0:220:7473:-672.448,-66.2266,0
-NC_002945.4	50470	.	C	T	5971.85	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=193;CIGAR=1X;DP=195;DPB=195;DPRA=0;EPP=10.0423;EPPR=0;GTI=0;LEN=1;MEANALT=2;MQ=60;MQMR=0;NS=1;NUMALT=1;ODDS=272.16;PAIRED=0.746114;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=6714;QR=0;RO=0;RPL=90;RPP=4.91174;RPPR=0;RPR=103;RUN=1;SAF=119;SAP=25.7939;SAR=74;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:195:0,193:0:0:193:6714:-604.088,-58.0988,0
-NC_002945.4	59861	.	A	G	4760.67	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=153;CIGAR=1X;DP=153;DPB=153;DPRA=0;EPP=11.8807;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQ=60;MQMR=0;NS=1;NUMALT=1;ODDS=216.708;PAIRED=0.986928;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=5376;QR=0;RO=0;RPL=55;RPP=29.2525;RPPR=0;RPR=98;RUN=1;SAF=88;SAP=10.5182;SAR=65;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:153:0,153:0:0:153:5376:-483.917,-46.0576,0
-NC_002945.4	69913	.	T	C	7603.9	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=255;CIGAR=1X;DP=257;DPB=257;DPRA=0;EPP=3.70006;EPPR=5.18177;GTI=0;LEN=1;MEANALT=2;MQ=60;MQMR=60;NS=1;NUMALT=1;ODDS=353.556;PAIRED=0.988235;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=8501;QR=12;RO=1;RPL=138;RPP=6.76567;RPPR=5.18177;RPR=117;RUN=1;SAF=127;SAP=3.01882;SAR=128;SRF=0;SRP=5.18177;SRR=1;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:257:1,255:1:12:255:8501:-763.836,-75.9887,0
-NC_002945.4	70082	.	G	A	5924.16	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=194;CIGAR=1X;DP=197;DPB=197;DPRA=0;EPP=14.4721;EPPR=0;GTI=0;LEN=1;MEANALT=3;MQ=60;MQMR=0;NS=1;NUMALT=1;ODDS=273.546;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=6664;QR=0;RO=0;RPL=117;RPP=20.9194;RPPR=0;RPR=77;RUN=1;SAF=86;SAP=8.42779;SAR=108;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:197:0,194:0:0:194:6664:-599.623,-58.3998,0
-NC_002945.4	70438	.	A	G	6080.55	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=196;CIGAR=1X;DP=196;DPB=196;DPRA=0;EPP=4.60567;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQ=60;MQMR=0;NS=1;NUMALT=1;ODDS=276.319;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=6801;QR=0;RO=0;RPL=93;RPP=4.11819;RPPR=0;RPR=103;RUN=1;SAF=97;SAP=3.05462;SAR=99;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:196:0,196:0:0:196:6801:-612.063,-59.0019,0
-NC_002945.4	79918	.	G	A	4959.13	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=161;CIGAR=1X;DP=163;DPB=163;DPRA=0;EPP=21.4746;EPPR=0;GTI=0;LEN=1;MEANALT=3;MQ=60;MQMR=0;NS=1;NUMALT=1;ODDS=227.799;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=5574;QR=0;RO=0;RPL=86;RPP=4.64228;RPPR=0;RPR=75;RUN=1;SAF=79;SAP=3.13169;SAR=82;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:163:0,161:0:0:161:5574:-501.545,-48.4658,0
-NC_002945.4	96244	.	G	A	2669.63	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=93;CIGAR=1X;DP=97;DPB=97;DPRA=0;EPP=9.75821;EPPR=5.18177;GTI=0;LEN=1;MEANALT=2;MQ=60;MQMR=60;NS=1;NUMALT=1;ODDS=129.968;PAIRED=0.978495;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3027;QR=12;RO=1;RPL=36;RPP=13.3073;RPPR=5.18177;RPR=57;RUN=1;SAF=53;SAP=6.95631;SAR=40;SRF=1;SRP=5.18177;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:97:1,93:1:12:93:3027:-271.401,-27.2177,0
-NC_002945.4	103811	.	C	G	3774.93	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=142;CIGAR=1X;DP=142;DPB=142;DPRA=0;EPP=18.6694;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQ=53.662;MQMR=0;NS=1;NUMALT=1;ODDS=201.459;PAIRED=0.880282;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=4514;QR=0;RO=0;RPL=94;RPP=35.3683;RPPR=0;RPR=48;RUN=1;SAF=51;SAP=27.4776;SAR=91;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:142:0,142:0:0:142:4514:-388.32,-42.7463,0
-NC_002945.4	103813	.	A	G	3658.32	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=131;CIGAR=1X;DP=131;DPB=131;DPRA=0;EPP=13.3704;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQ=53.1298;MQMR=0;NS=1;NUMALT=1;ODDS=186.21;PAIRED=0.870229;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=4389;QR=0;RO=0;RPL=84;RPP=25.703;RPPR=0;RPR=47;RUN=1;SAF=50;SAP=18.94;SAR=81;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:131:0,131:0:0:131:4389:-374.217,-39.4349,0
-NC_002945.4	103814	.	C	G	3681.29	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=132;CIGAR=1X;DP=132;DPB=132;DPRA=0;EPP=10.9724;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQ=52.9167;MQMR=0;NS=1;NUMALT=1;ODDS=187.596;PAIRED=0.871212;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=4410;QR=0;RO=0;RPL=86;RPP=29.3312;RPPR=0;RPR=46;RUN=1;SAF=51;SAP=17.8158;SAR=81;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:132:0,132:0:0:132:4410:-376.535,-39.736,0
-NC_002945.4	110198	.	C	T	6630.38	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=217;CIGAR=1X;DP=224;DPB=224;DPRA=0;EPP=10.3052;EPPR=5.18177;GTI=0;LEN=1;MEANALT=3;MQ=60;MQMR=60;NS=1;NUMALT=1;ODDS=284.617;PAIRED=0.995392;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=7472;QR=65;RO=4;RPL=91;RPP=15.2686;RPPR=11.6962;RPR=126;RUN=1;SAF=107;SAP=3.10036;SAR=110;SRF=1;SRP=5.18177;SRR=3;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:224:4,217:4:65:217:7472:-666.392,-60.6573,0
-NC_002945.4	114965	.	C	T	4618.35	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=150;CIGAR=1X;DP=151;DPB=151;DPRA=0;EPP=6.71628;EPPR=5.18177;GTI=0;LEN=1;MEANALT=1;MQ=60;MQMR=60;NS=1;NUMALT=1;ODDS=207.774;PAIRED=0.986667;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=5180;QR=14;RO=1;RPL=75;RPP=3.0103;RPPR=5.18177;RPR=75;RUN=1;SAF=74;SAP=3.06821;SAR=76;SRF=1;SRP=5.18177;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:151:1,150:1:14:150:5180:-464.867,-44.0555,0
-NC_002945.4	117800	.	C	G	4459.46	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=167;CIGAR=1X;DP=170;DPB=170;DPRA=0;EPP=4.58364;EPPR=9.52472;GTI=0;LEN=1;MEANALT=1;MQ=60;MQMR=60;NS=1;NUMALT=1;ODDS=224.964;PAIRED=0.994012;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=5008;QR=37;RO=3;RPL=89;RPP=4.58364;RPPR=9.52472;RPR=78;RUN=1;SAF=78;SAP=4.58364;SAR=89;SRF=3;SRP=9.52472;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:170:3,167:3:37:167:5008:-447.336,-47.7218,0
-NC_002945.4	127447	.	G	C	4341.27	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=148;CIGAR=1X;DP=149;DPB=149;DPRA=0;EPP=12.9286;EPPR=5.18177;GTI=0;LEN=1;MEANALT=1;MQ=60;MQMR=60;NS=1;NUMALT=1;ODDS=205.475;PAIRED=0.97973;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4922;QR=12;RO=1;RPL=98;RPP=36.8148;RPPR=5.18177;RPR=50;RUN=1;SAF=63;SAP=10.1116;SAR=85;SRF=1;SRP=5.18177;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:149:1,148:1:12:148:4922:-441.892,-43.6535,0
-NC_002945.4	130166	.	C	T	5026.14	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=169;CIGAR=1X;DP=170;DPB=170;DPRA=0;EPP=3.12594;EPPR=0;GTI=0;LEN=1;MEANALT=2;MQ=60;MQMR=0;NS=1;NUMALT=1;ODDS=238.889;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=5630;QR=0;RO=0;RPL=83;RPP=3.12594;RPPR=0;RPR=86;RUN=1;SAF=93;SAP=6.72365;SAR=76;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:170:0,169:0:0:169:5630:-506.645,-50.8741,0
-NC_002945.4	130237	.	T	C	5794.53	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=191;CIGAR=1X;DP=194;DPB=194;DPRA=0;EPP=9.02448;EPPR=0;GTI=0;LEN=1;MEANALT=3;MQ=60;MQMR=0;NS=1;NUMALT=1;ODDS=269.387;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=6496;QR=0;RO=0;RPL=83;RPP=10.1159;RPPR=0;RPR=108;RUN=1;SAF=99;SAP=3.56738;SAR=92;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:194:0,191:0:0:191:6496:-584.534,-57.4967,0
-NC_002945.4	140686	.	A	G	8220.71	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=271;CIGAR=1X;DP=274;DPB=274;DPRA=0;EPP=4.81318;EPPR=5.18177;GTI=0;LEN=1;MEANALT=2;MQ=60;MQMR=60;NS=1;NUMALT=1;ODDS=375.246;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=9207;QR=14;RO=1;RPL=159;RPP=20.7106;RPPR=5.18177;RPR=112;RUN=1;SAF=133;SAP=3.21062;SAR=138;SRF=0;SRP=5.18177;SRR=1;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:274:1,271:1:14:271:9207:-827.085,-80.6185,0
-NC_002945.4	143799	.	T	C	6607.75	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=229;CIGAR=1X;DP=234;DPB=234;DPRA=0;EPP=4.61283;EPPR=0;GTI=0;LEN=1;MEANALT=3;MQ=60;MQMR=0;NS=1;NUMALT=1;ODDS=322.067;PAIRED=0.995633;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=7412;QR=0;RO=0;RPL=104;RPP=7.19204;RPPR=0;RPR=125;RUN=1;SAF=93;SAP=20.5433;SAR=136;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:234:0,229:0:0:229:7412:-666.943,-68.9359,0
-NC_002945.4	144992	.	G	A	5817.34	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=190;CIGAR=1X;DP=191;DPB=191;DPRA=0;EPP=5.25035;EPPR=0;GTI=0;LEN=1;MEANALT=2;MQ=60;MQMR=0;NS=1;NUMALT=1;ODDS=268.001;PAIRED=0.994737;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=6525;QR=0;RO=0;RPL=111;RPP=14.7134;RPPR=0;RPR=79;RUN=1;SAF=87;SAP=5.93607;SAR=103;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:191:0,190:0:0:190:6525:-587.132,-57.1957,0
-NC_002945.4	148871	.	G	A	8674.57	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=283;CIGAR=1X;DP=284;DPB=284;DPRA=0;EPP=4.73674;EPPR=0;GTI=0;LEN=1;MEANALT=2;MQ=60;MQMR=0;NS=1;NUMALT=1;ODDS=396.926;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=9722;QR=0;RO=0;RPL=173;RPP=33.4646;RPPR=0;RPR=110;RUN=1;SAF=142;SAP=3.01797;SAR=141;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:284:0,283:0:0:283:9722:-874.663,-85.1915,0
-NC_002945.4	151025	.	N	.	.	.	.	GT	./.
-NC_002945.4	151026	.	N	.	.	.	.	GT	./.
-NC_002945.4	151027	.	N	.	.	.	.	GT	./.
-NC_002945.4	151028	.	N	.	.	.	.	GT	./.
-NC_002945.4	151029	.	N	.	.	.	.	GT	./.
-NC_002945.4	151030	.	N	.	.	.	.	GT	./.
-NC_002945.4	151031	.	N	.	.	.	.	GT	./.
-NC_002945.4	151032	.	N	.	.	.	.	GT	./.
-NC_002945.4	151033	.	N	.	.	.	.	GT	./.
-NC_002945.4	151034	.	N	.	.	.	.	GT	./.
-NC_002945.4	151035	.	N	.	.	.	.	GT	./.
-NC_002945.4	151036	.	N	.	.	.	.	GT	./.
-NC_002945.4	151037	.	N	.	.	.	.	GT	./.
-NC_002945.4	151038	.	N	.	.	.	.	GT	./.
-NC_002945.4	151039	.	N	.	.	.	.	GT	./.
-NC_002945.4	151040	.	N	.	.	.	.	GT	./.
-NC_002945.4	159370	.	A	G	4358.72	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=145;CIGAR=1X;DP=145;DPB=145;DPRA=0;EPP=6.37983;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQ=59.8897;MQMR=0;NS=1;NUMALT=1;ODDS=205.618;PAIRED=0.97931;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=4890;QR=0;RO=0;RPL=78;RPP=4.82236;RPPR=0;RPR=67;RUN=1;SAF=66;SAP=5.54119;SAR=79;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:145:0,145:0:0:145:4890:-440.178,-43.6494,0
-NC_002945.4	160535	.	T	C	5301.51	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=178;CIGAR=1X;DP=181;DPB=181;DPRA=0;EPP=5.40136;EPPR=7.35324;GTI=0;LEN=1;MEANALT=2;MQ=60;MQMR=60;NS=1;NUMALT=1;ODDS=243.206;PAIRED=0.994382;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=5950;QR=26;RO=2;RPL=82;RPP=5.40136;RPPR=7.35324;RPR=96;RUN=1;SAF=78;SAP=8.91475;SAR=100;SRF=2;SRP=7.35324;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:181:2,178:2:26:178:5950:-533.081,-51.8387,0
-NC_002945.4	165799	.	G	A	4432.73	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=150;CIGAR=1X;DP=152;DPB=152;DPRA=0;EPP=3.0103;EPPR=0;GTI=0;LEN=1;MEANALT=2;MQ=60;MQMR=0;NS=1;NUMALT=1;ODDS=212.549;PAIRED=0.993333;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=4970;QR=0;RO=0;RPL=67;RPP=6.71628;RPPR=0;RPR=83;RUN=1;SAF=72;SAP=3.53145;SAR=78;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:152:0,150:0:0:150:4970:-447.254,-45.1545,0
-NC_002945.4	166696	.	A	G	5233.3	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=188;CIGAR=1X;DP=190;DPB=190;DPRA=0;EPP=3.42611;EPPR=5.18177;GTI=0;LEN=1;MEANALT=2;MQ=59.8032;MQMR=60;NS=1;NUMALT=1;ODDS=258.122;PAIRED=0.984043;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=5904;QR=25;RO=1;RPL=113;RPP=19.6891;RPPR=5.18177;RPR=75;RUN=1;SAF=86;SAP=5.9672;SAR=102;SRF=0;SRP=5.18177;SRR=1;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:190:1,188:1:25:188:5904:-528.14,-54.5798,0
-NC_002945.4	179885	.	G	A	4164.8	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=147;CIGAR=1X;DP=152;DPB=152;DPRA=0;EPP=7.27939;EPPR=13.8677;GTI=0;LEN=1;MEANALT=1;MQ=60;MQMR=60;NS=1;NUMALT=1;ODDS=192.743;PAIRED=0.972789;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4683;QR=60;RO=5;RPL=76;RPP=3.3796;RPPR=13.8677;RPR=71;RUN=1;SAF=77;SAP=3.73412;SAR=70;SRF=5;SRP=13.8677;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:152:5,147:5:60:147:4683:-416.046,-40.2366,0
-NC_002945.4	189083	.	A	G	3008.28	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=115;CIGAR=1X;DP=115;DPB=115;DPRA=0;EPP=3.02918;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQ=60;MQMR=0;NS=1;NUMALT=1;ODDS=164.029;PAIRED=0.991304;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=3426;QR=0;RO=0;RPL=34;RPP=44.7215;RPPR=0;RPR=81;RUN=1;SAF=59;SAP=3.18024;SAR=56;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:115:0,115:0:0:115:3426:-308.491,-34.6185,0
-NC_002945.4	192177	.	A	G	5535.44	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=179;CIGAR=1X;DP=181;DPB=181;DPRA=0;EPP=6.5162;EPPR=7.35324;GTI=0;LEN=1;MEANALT=1;MQ=60;MQMR=60;NS=1;NUMALT=1;ODDS=243.641;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=6206;QR=29;RO=2;RPL=88;RPP=3.11948;RPPR=7.35324;RPR=91;RUN=1;SAF=90;SAP=3.02243;SAR=89;SRF=2;SRP=7.35324;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:181:2,179:2:29:179:6206:-555.775,-51.7315,0
-NC_002945.4	198890	.	T	G	6499.49	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=214;CIGAR=1X;DP=214;DPB=214;DPRA=0;EPP=3.0103;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQ=60;MQMR=0;NS=1;NUMALT=1;ODDS=301.272;PAIRED=0.990654;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=7311;QR=0;RO=0;RPL=133;RPP=30.448;RPPR=0;RPR=81;RUN=1;SAF=88;SAP=17.6627;SAR=126;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:214:0,214:0:0:214:7311:-657.965,-64.4204,0
-NC_002945.4	223919	.	C	T	3001.77	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=106;CIGAR=1X;DP=109;DPB=109;DPRA=0;EPP=11.2045;EPPR=7.35324;GTI=0;LEN=1;MEANALT=2;MQ=60;MQMR=60;NS=1;NUMALT=1;ODDS=144.848;PAIRED=0.981132;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3422;QR=24;RO=2;RPL=62;RPP=9.64763;RPPR=7.35324;RPR=44;RUN=1;SAF=71;SAP=29.5596;SAR=35;SRF=0;SRP=7.35324;SRR=2;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:109:2,106:2:24:106:3422:-305.865,-30.3513,0
-NC_002945.4	228109	.	C	T	4557.85	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=152;CIGAR=1X;DP=155;DPB=155;DPRA=0;EPP=3.06744;EPPR=9.52472;GTI=0;LEN=1;MEANALT=1;MQ=60;MQMR=60;NS=1;NUMALT=1;ODDS=202.036;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=5123;QR=38;RO=3;RPL=75;RPP=3.06744;RPPR=3.73412;RPR=77;RUN=1;SAF=76;SAP=3.0103;SAR=76;SRF=2;SRP=3.73412;SRR=1;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:155:3,152:3:38:152:5123:-457.61,-43.113,0
-NC_002945.4	230661	.	A	G	6238.38	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=201;CIGAR=1X;DP=204;DPB=204;DPRA=0;EPP=8.72527;EPPR=0;GTI=0;LEN=1;MEANALT=2;MQ=60;MQMR=0;NS=1;NUMALT=1;ODDS=283.25;PAIRED=0.985075;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=7008;QR=0;RO=0;RPL=80;RPP=21.1707;RPPR=0;RPR=121;RUN=1;SAF=112;SAP=8.72527;SAR=89;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:204:0,201:0:0:201:7008:-630.548,-60.507,0
-NC_002945.4	232188	.	G	C	3092.5	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=116;CIGAR=1X;DP=117;DPB=117;DPRA=0;EPP=9.07545;EPPR=5.18177;GTI=0;LEN=1;MEANALT=1;MQ=60;MQMR=60;NS=1;NUMALT=1;ODDS=161.356;PAIRED=0.965517;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3527;QR=12;RO=1;RPL=81;RPP=42.621;RPPR=5.18177;RPR=35;RUN=1;SAF=56;SAP=3.30981;SAR=60;SRF=1;SRP=5.18177;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:117:1,116:1:12:116:3527:-316.409,-34.0205,0
-NC_002945.4	295519	.	T	C	6464.87	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=212;CIGAR=1X;DP=214;DPB=214;DPRA=0;EPP=16.285;EPPR=0;GTI=0;LEN=1;MEANALT=2;MQ=59.7736;MQMR=0;NS=1;NUMALT=1;ODDS=298.5;PAIRED=0.957547;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=7260;QR=0;RO=0;RPL=89;RPP=14.851;RPPR=0;RPR=123;RUN=1;SAF=111;SAP=4.03458;SAR=101;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:214:0,212:0:0:212:7260:-652.886,-63.8184,0
-NC_002945.4	299636	.	A	G	7759.67	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=245;CIGAR=1X;DP=245;DPB=245;DPRA=0;EPP=3.09007;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQ=60;MQMR=0;NS=1;NUMALT=1;ODDS=344.247;PAIRED=0.995918;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=8667;QR=0;RO=0;RPL=120;RPP=3.23188;RPPR=0;RPR=125;RUN=1;SAF=121;SAP=3.09007;SAR=124;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:245:0,245:0:0:245:8667:-779.885,-73.7524,0
-NC_002945.4	304339	.	G	A	5352.38	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=174;CIGAR=1X;DP=175;DPB=175;DPRA=0;EPP=17.4369;EPPR=0;GTI=0;LEN=1;MEANALT=2;MQ=60;MQMR=0;NS=1;NUMALT=1;ODDS=245.82;PAIRED=0.988506;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=6025;QR=0;RO=0;RPL=106;RPP=21.031;RPPR=0;RPR=68;RUN=1;SAF=88;SAP=3.06022;SAR=86;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:175:0,174:0:0:174:6025:-542.149,-52.3792,0
-NC_002945.4	306656	.	N	.	.	.	.	GT	./.
-NC_002945.4	306657	.	N	.	.	.	.	GT	./.
-NC_002945.4	306658	.	N	.	.	.	.	GT	./.
-NC_002945.4	306659	.	N	.	.	.	.	GT	./.
-NC_002945.4	306660	.	N	.	.	.	.	GT	./.
-NC_002945.4	306661	.	N	.	.	.	.	GT	./.
-NC_002945.4	306662	.	N	.	.	.	.	GT	./.
-NC_002945.4	306663	.	N	.	.	.	.	GT	./.
-NC_002945.4	306664	.	N	.	.	.	.	GT	./.
-NC_002945.4	306665	.	N	.	.	.	.	GT	./.
-NC_002945.4	306666	.	N	.	.	.	.	GT	./.
-NC_002945.4	306667	.	N	.	.	.	.	GT	./.
-NC_002945.4	306668	.	N	.	.	.	.	GT	./.
-NC_002945.4	306669	.	N	.	.	.	.	GT	./.
-NC_002945.4	306670	.	N	.	.	.	.	GT	./.
-NC_002945.4	306671	.	N	.	.	.	.	GT	./.
-NC_002945.4	306672	.	N	.	.	.	.	GT	./.
-NC_002945.4	306673	.	N	.	.	.	.	GT	./.
-NC_002945.4	306674	.	N	.	.	.	.	GT	./.
-NC_002945.4	306675	.	N	.	.	.	.	GT	./.
-NC_002945.4	306676	.	N	.	.	.	.	GT	./.
-NC_002945.4	306677	.	N	.	.	.	.	GT	./.
-NC_002945.4	306678	.	N	.	.	.	.	GT	./.
-NC_002945.4	306679	.	N	.	.	.	.	GT	./.
-NC_002945.4	306680	.	N	.	.	.	.	GT	./.
-NC_002945.4	306681	.	N	.	.	.	.	GT	./.
-NC_002945.4	306682	.	N	.	.	.	.	GT	./.
-NC_002945.4	306683	.	N	.	.	.	.	GT	./.
-NC_002945.4	306684	.	N	.	.	.	.	GT	./.
-NC_002945.4	306685	.	N	.	.	.	.	GT	./.
-NC_002945.4	306686	.	N	.	.	.	.	GT	./.
-NC_002945.4	306687	.	N	.	.	.	.	GT	./.
-NC_002945.4	306688	.	N	.	.	.	.	GT	./.
-NC_002945.4	306689	.	N	.	.	.	.	GT	./.
-NC_002945.4	306690	.	N	.	.	.	.	GT	./.
-NC_002945.4	306691	.	N	.	.	.	.	GT	./.
-NC_002945.4	306692	.	N	.	.	.	.	GT	./.
-NC_002945.4	306693	.	N	.	.	.	.	GT	./.
-NC_002945.4	306694	.	N	.	.	.	.	GT	./.
-NC_002945.4	306695	.	N	.	.	.	.	GT	./.
-NC_002945.4	306696	.	N	.	.	.	.	GT	./.
-NC_002945.4	306697	.	N	.	.	.	.	GT	./.
-NC_002945.4	306698	.	N	.	.	.	.	GT	./.
-NC_002945.4	306699	.	N	.	.	.	.	GT	./.
-NC_002945.4	306700	.	N	.	.	.	.	GT	./.
-NC_002945.4	306701	.	N	.	.	.	.	GT	./.
-NC_002945.4	306702	.	N	.	.	.	.	GT	./.
-NC_002945.4	306703	.	N	.	.	.	.	GT	./.
-NC_002945.4	306704	.	N	.	.	.	.	GT	./.
-NC_002945.4	306705	.	N	.	.	.	.	GT	./.
-NC_002945.4	306706	.	N	.	.	.	.	GT	./.
-NC_002945.4	306707	.	N	.	.	.	.	GT	./.
-NC_002945.4	306708	.	N	.	.	.	.	GT	./.
-NC_002945.4	306709	.	N	.	.	.	.	GT	./.
-NC_002945.4	306710	.	N	.	.	.	.	GT	./.
-NC_002945.4	319911	.	C	T	5117.89	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=173;CIGAR=1X;DP=174;DPB=174;DPRA=0;EPP=3.02285;EPPR=0;GTI=0;LEN=1;MEANALT=2;MQ=59.815;MQMR=0;NS=1;NUMALT=1;ODDS=244.434;PAIRED=0.99422;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=5734;QR=0;RO=0;RPL=95;RPP=6.63779;RPPR=0;RPR=78;RUN=1;SAF=81;SAP=4.52908;SAR=92;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:174:0,173:0:0:173:5734:-515.956,-52.0782,0
-NC_002945.4	332124	.	C	T	235.47099999999998	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=10;CIGAR=1X;DP=11;DPB=11;DPRA=0;EPP=6.48466;EPPR=0;GTI=0;LEN=1;MEANALT=2;MQ=59.1;MQMR=0;NS=1;NUMALT=1;ODDS=18.4681;PAIRED=0.9;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=314;QR=0;RO=0;RPL=10;RPP=24.725;RPPR=0;RPR=0;RUN=1;SAF=7;SAP=6.48466;SAR=3;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:11:0,10:0:0:10:314:-28.4197,-3.0103,0
-NC_002945.4	332128	.	C	G	201.09	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=10;CIGAR=1X;DP=10;DPB=10;DPRA=0;EPP=10.8276;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQ=59.1;MQMR=0;NS=1;NUMALT=1;ODDS=18.4681;PAIRED=0.9;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=284;QR=0;RO=0;RPL=10;RPP=24.725;RPPR=0;RPR=0;RUN=1;SAF=8;SAP=10.8276;SAR=2;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:10:0,10:0:0:10:284:-25.8335,-3.0103,0
-NC_002945.4	332144	.	C	T	125.417	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=6;CIGAR=1X;DP=6;DPB=6;DPRA=0;EPP=16.0391;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQ=60;MQMR=0;NS=1;NUMALT=1;ODDS=12.9229;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=196;QR=0;RO=0;RPL=6;RPP=16.0391;RPPR=0;RPR=0;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:6:0,6:0:0:6:196:-17.9602,-1.80618,0
-NC_002945.4	332145	.	G	T	139.142	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=6;CIGAR=1X;DP=6;DPB=6;DPRA=0;EPP=16.0391;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQ=60;MQMR=0;NS=1;NUMALT=1;ODDS=12.9229;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=211;QR=0;RO=0;RPL=6;RPP=16.0391;RPPR=0;RPR=0;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:6:0,6:0:0:6:211:-19.3328,-1.80618,0
-NC_002945.4	332154	.	G	C	126.29799999999999	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=6;CIGAR=1X;DP=6;DPB=6;DPRA=0;EPP=16.0391;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQ=60;MQMR=0;NS=1;NUMALT=1;ODDS=12.9229;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=197;QR=0;RO=0;RPL=6;RPP=16.0391;RPPR=0;RPR=0;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:6:0,6:0:0:6:197:-18.0484,-1.80618,0
-NC_002945.4	332160	.	N	.	.	.	.	GT	./.
-NC_002945.4	332161	.	N	.	.	.	.	GT	./.
-NC_002945.4	332162	.	N	.	.	.	.	GT	./.
-NC_002945.4	332163	.	N	.	.	.	.	GT	./.
-NC_002945.4	332164	.	N	.	.	.	.	GT	./.
-NC_002945.4	332165	.	N	.	.	.	.	GT	./.
-NC_002945.4	332166	.	N	.	.	.	.	GT	./.
-NC_002945.4	332167	.	N	.	.	.	.	GT	./.
-NC_002945.4	332168	.	N	.	.	.	.	GT	./.
-NC_002945.4	332169	.	N	.	.	.	.	GT	./.
-NC_002945.4	332170	.	N	.	.	.	.	GT	./.
-NC_002945.4	332171	.	N	.	.	.	.	GT	./.
-NC_002945.4	332172	.	N	.	.	.	.	GT	./.
-NC_002945.4	332173	.	N	.	.	.	.	GT	./.
-NC_002945.4	332174	.	N	.	.	.	.	GT	./.
-NC_002945.4	332175	.	N	.	.	.	.	GT	./.
-NC_002945.4	332176	.	N	.	.	.	.	GT	./.
-NC_002945.4	332177	.	N	.	.	.	.	GT	./.
-NC_002945.4	332178	.	N	.	.	.	.	GT	./.
-NC_002945.4	332179	.	N	.	.	.	.	GT	./.
-NC_002945.4	332180	.	N	.	.	.	.	GT	./.
-NC_002945.4	332181	.	N	.	.	.	.	GT	./.
-NC_002945.4	332182	.	N	.	.	.	.	GT	./.
-NC_002945.4	332183	.	N	.	.	.	.	GT	./.
-NC_002945.4	332184	.	N	.	.	.	.	GT	./.
-NC_002945.4	332185	.	N	.	.	.	.	GT	./.
-NC_002945.4	332186	.	N	.	.	.	.	GT	./.
-NC_002945.4	332187	.	N	.	.	.	.	GT	./.
-NC_002945.4	332188	.	N	.	.	.	.	GT	./.
-NC_002945.4	332189	.	N	.	.	.	.	GT	./.
-NC_002945.4	332190	.	N	.	.	.	.	GT	./.
-NC_002945.4	332191	.	N	.	.	.	.	GT	./.
-NC_002945.4	332192	.	N	.	.	.	.	GT	./.
-NC_002945.4	332193	.	N	.	.	.	.	GT	./.
-NC_002945.4	332215	.	C	G	379.908	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=17;CIGAR=1X;DP=17;DPB=17;DPRA=0;EPP=39.9253;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQ=57.1176;MQMR=0;NS=1;NUMALT=1;ODDS=28.1722;PAIRED=0.882353;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=596;QR=0;RO=0;RPL=0;RPP=39.9253;RPPR=0;RPR=17;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:17:0,17:0:0:17:596:-53.3433,-5.11751,0
-NC_002945.4	332218	.	A	G	439.338	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=19;CIGAR=1X;DP=19;DPB=19;DPRA=0;EPP=44.2683;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQ=57.4211;MQMR=0;NS=1;NUMALT=1;ODDS=30.9448;PAIRED=0.894737;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=681;QR=0;RO=0;RPL=0;RPP=44.2683;RPPR=0;RPR=19;RUN=1;SAF=19;SAP=44.2683;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:19:0,19:0:0:19:681:-61.0925,-5.71957,0
-NC_002945.4	333010	.	T	G	2567.13	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=84;CIGAR=1X;DP=84;DPB=84;DPRA=0;EPP=8.07707;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQ=60;MQMR=0;NS=1;NUMALT=1;ODDS=121.054;PAIRED=0.964286;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=2912;QR=0;RO=0;RPL=51;RPP=11.386;RPPR=0;RPR=33;RUN=1;SAF=52;SAP=13.3506;SAR=32;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:84:0,84:0:0:84:2912:-262.265,-25.2865,0
-NC_002945.4	333486	.	N	.	.	.	.	GT	./.
-NC_002945.4	333487	.	N	.	.	.	.	GT	./.
-NC_002945.4	333488	.	N	.	.	.	.	GT	./.
-NC_002945.4	333489	.	N	.	.	.	.	GT	./.
-NC_002945.4	333490	.	N	.	.	.	.	GT	./.
-NC_002945.4	333491	.	N	.	.	.	.	GT	./.
-NC_002945.4	333492	.	N	.	.	.	.	GT	./.
-NC_002945.4	333493	.	N	.	.	.	.	GT	./.
-NC_002945.4	333494	.	N	.	.	.	.	GT	./.
-NC_002945.4	333495	.	N	.	.	.	.	GT	./.
-NC_002945.4	333496	.	N	.	.	.	.	GT	./.
-NC_002945.4	333497	.	N	.	.	.	.	GT	./.
-NC_002945.4	333498	.	N	.	.	.	.	GT	./.
-NC_002945.4	333499	.	N	.	.	.	.	GT	./.
-NC_002945.4	333500	.	N	.	.	.	.	GT	./.
-NC_002945.4	333501	.	N	.	.	.	.	GT	./.
-NC_002945.4	333502	.	N	.	.	.	.	GT	./.
-NC_002945.4	333503	.	N	.	.	.	.	GT	./.
-NC_002945.4	333504	.	N	.	.	.	.	GT	./.
-NC_002945.4	333505	.	N	.	.	.	.	GT	./.
-NC_002945.4	333506	.	N	.	.	.	.	GT	./.
-NC_002945.4	333507	.	N	.	.	.	.	GT	./.
-NC_002945.4	333508	.	N	.	.	.	.	GT	./.
-NC_002945.4	333509	.	N	.	.	.	.	GT	./.
-NC_002945.4	333510	.	N	.	.	.	.	GT	./.
-NC_002945.4	333511	.	N	.	.	.	.	GT	./.
-NC_002945.4	333512	.	N	.	.	.	.	GT	./.
-NC_002945.4	333513	.	N	.	.	.	.	GT	./.
-NC_002945.4	333514	.	N	.	.	.	.	GT	./.
-NC_002945.4	333515	.	N	.	.	.	.	GT	./.
-NC_002945.4	333516	.	N	.	.	.	.	GT	./.
-NC_002945.4	333517	.	N	.	.	.	.	GT	./.
-NC_002945.4	333518	.	N	.	.	.	.	GT	./.
-NC_002945.4	333519	.	N	.	.	.	.	GT	./.
-NC_002945.4	333520	.	N	.	.	.	.	GT	./.
-NC_002945.4	333521	.	N	.	.	.	.	GT	./.
-NC_002945.4	333522	.	N	.	.	.	.	GT	./.
-NC_002945.4	333523	.	N	.	.	.	.	GT	./.
-NC_002945.4	333524	.	N	.	.	.	.	GT	./.
-NC_002945.4	333525	.	N	.	.	.	.	GT	./.
-NC_002945.4	333526	.	N	.	.	.	.	GT	./.
-NC_002945.4	333527	.	N	.	.	.	.	GT	./.
-NC_002945.4	333528	.	N	.	.	.	.	GT	./.
-NC_002945.4	333529	.	N	.	.	.	.	GT	./.
-NC_002945.4	333530	.	N	.	.	.	.	GT	./.
-NC_002945.4	333531	.	N	.	.	.	.	GT	./.
-NC_002945.4	333532	.	N	.	.	.	.	GT	./.
-NC_002945.4	333533	.	N	.	.	.	.	GT	./.
-NC_002945.4	333534	.	N	.	.	.	.	GT	./.
-NC_002945.4	333535	.	N	.	.	.	.	GT	./.
-NC_002945.4	333536	.	N	.	.	.	.	GT	./.
-NC_002945.4	333537	.	N	.	.	.	.	GT	./.
-NC_002945.4	333538	.	N	.	.	.	.	GT	./.
-NC_002945.4	333539	.	N	.	.	.	.	GT	./.
-NC_002945.4	333540	.	N	.	.	.	.	GT	./.
-NC_002945.4	333541	.	N	.	.	.	.	GT	./.
-NC_002945.4	333542	.	N	.	.	.	.	GT	./.
-NC_002945.4	333543	.	N	.	.	.	.	GT	./.
-NC_002945.4	333544	.	N	.	.	.	.	GT	./.
-NC_002945.4	333545	.	N	.	.	.	.	GT	./.
-NC_002945.4	333546	.	N	.	.	.	.	GT	./.
-NC_002945.4	333547	.	N	.	.	.	.	GT	./.
-NC_002945.4	333548	.	N	.	.	.	.	GT	./.
-NC_002945.4	333549	.	N	.	.	.	.	GT	./.
-NC_002945.4	333550	.	N	.	.	.	.	GT	./.
-NC_002945.4	333551	.	N	.	.	.	.	GT	./.
-NC_002945.4	333552	.	N	.	.	.	.	GT	./.
-NC_002945.4	333553	.	N	.	.	.	.	GT	./.
-NC_002945.4	333590	.	N	.	.	.	.	GT	./.
-NC_002945.4	333591	.	N	.	.	.	.	GT	./.
-NC_002945.4	333592	.	N	.	.	.	.	GT	./.
-NC_002945.4	333593	.	N	.	.	.	.	GT	./.
-NC_002945.4	333594	.	N	.	.	.	.	GT	./.
-NC_002945.4	333595	.	N	.	.	.	.	GT	./.
-NC_002945.4	333596	.	N	.	.	.	.	GT	./.
-NC_002945.4	333597	.	N	.	.	.	.	GT	./.
-NC_002945.4	333598	.	N	.	.	.	.	GT	./.
-NC_002945.4	333599	.	N	.	.	.	.	GT	./.
-NC_002945.4	333600	.	N	.	.	.	.	GT	./.
-NC_002945.4	333601	.	N	.	.	.	.	GT	./.
-NC_002945.4	333602	.	N	.	.	.	.	GT	./.
-NC_002945.4	333603	.	N	.	.	.	.	GT	./.
-NC_002945.4	333604	.	N	.	.	.	.	GT	./.
-NC_002945.4	333605	.	N	.	.	.	.	GT	./.
-NC_002945.4	333606	.	N	.	.	.	.	GT	./.
-NC_002945.4	333607	.	N	.	.	.	.	GT	./.
-NC_002945.4	333608	.	N	.	.	.	.	GT	./.
-NC_002945.4	333609	.	N	.	.	.	.	GT	./.
-NC_002945.4	333610	.	N	.	.	.	.	GT	./.
-NC_002945.4	333611	.	N	.	.	.	.	GT	./.
-NC_002945.4	333612	.	N	.	.	.	.	GT	./.
-NC_002945.4	333613	.	N	.	.	.	.	GT	./.
-NC_002945.4	333614	.	N	.	.	.	.	GT	./.
-NC_002945.4	333615	.	N	.	.	.	.	GT	./.
-NC_002945.4	333616	.	N	.	.	.	.	GT	./.
-NC_002945.4	333617	.	N	.	.	.	.	GT	./.
-NC_002945.4	333618	.	N	.	.	.	.	GT	./.
-NC_002945.4	333619	.	N	.	.	.	.	GT	./.
-NC_002945.4	333620	.	N	.	.	.	.	GT	./.
-NC_002945.4	333621	.	N	.	.	.	.	GT	./.
-NC_002945.4	333622	.	N	.	.	.	.	GT	./.
-NC_002945.4	333623	.	N	.	.	.	.	GT	./.
-NC_002945.4	333624	.	N	.	.	.	.	GT	./.
-NC_002945.4	333625	.	N	.	.	.	.	GT	./.
-NC_002945.4	333626	.	N	.	.	.	.	GT	./.
-NC_002945.4	333627	.	N	.	.	.	.	GT	./.
-NC_002945.4	333628	.	N	.	.	.	.	GT	./.
-NC_002945.4	333629	.	N	.	.	.	.	GT	./.
-NC_002945.4	333630	.	N	.	.	.	.	GT	./.
-NC_002945.4	333631	.	N	.	.	.	.	GT	./.
-NC_002945.4	333632	.	N	.	.	.	.	GT	./.
-NC_002945.4	333633	.	N	.	.	.	.	GT	./.
-NC_002945.4	333634	.	N	.	.	.	.	GT	./.
 NC_002945.4	334320	.	T	C	2194.66	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=79;CIGAR=1X;DP=80;DPB=80;DPRA=0;EPP=3.69747;EPPR=0;GTI=0;LEN=1;MEANALT=2;MQ=53.4051;MQMR=0;NS=1;NUMALT=1;ODDS=114.122;PAIRED=0.987342;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=2577;QR=0;RO=0;RPL=41;RPP=3.25768;RPPR=0;RPR=38;RUN=1;SAF=46;SAP=7.6556;SAR=33;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:80:0,79:0:0:79:2577:-223.164,-23.7814,0
 NC_002945.4	334323	.	T	C	2171.15	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=79;CIGAR=1X;DP=79;DPB=79;DPRA=0;EPP=5.23675;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQ=53.4051;MQMR=0;NS=1;NUMALT=1;ODDS=114.122;PAIRED=0.987342;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=2540;QR=0;RO=0;RPL=40;RPP=3.03779;RPPR=0;RPR=39;RUN=1;SAF=45;SAP=6.33623;SAR=34;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:79:0,79:0:0:79:2540:-220.812,-23.7814,0
-NC_002945.4	336477	.	N	.	.	.	.	GT	./.
-NC_002945.4	336478	.	N	.	.	.	.	GT	./.
-NC_002945.4	336479	.	N	.	.	.	.	GT	./.
-NC_002945.4	336480	.	N	.	.	.	.	GT	./.
-NC_002945.4	336481	.	N	.	.	.	.	GT	./.
-NC_002945.4	336482	.	N	.	.	.	.	GT	./.
-NC_002945.4	336483	.	N	.	.	.	.	GT	./.
-NC_002945.4	336484	.	N	.	.	.	.	GT	./.
-NC_002945.4	336485	.	N	.	.	.	.	GT	./.
-NC_002945.4	336486	.	N	.	.	.	.	GT	./.
-NC_002945.4	336487	.	N	.	.	.	.	GT	./.
-NC_002945.4	336488	.	N	.	.	.	.	GT	./.
-NC_002945.4	336489	.	N	.	.	.	.	GT	./.
-NC_002945.4	336590	.	N	.	.	.	.	GT	./.
-NC_002945.4	336591	.	N	.	.	.	.	GT	./.
-NC_002945.4	336592	.	N	.	.	.	.	GT	./.
-NC_002945.4	336593	.	N	.	.	.	.	GT	./.
-NC_002945.4	336594	.	N	.	.	.	.	GT	./.
-NC_002945.4	336595	.	N	.	.	.	.	GT	./.
-NC_002945.4	336596	.	N	.	.	.	.	GT	./.
-NC_002945.4	336597	.	N	.	.	.	.	GT	./.
-NC_002945.4	336598	.	N	.	.	.	.	GT	./.
-NC_002945.4	336599	.	N	.	.	.	.	GT	./.
-NC_002945.4	336600	.	N	.	.	.	.	GT	./.
-NC_002945.4	336601	.	N	.	.	.	.	GT	./.
-NC_002945.4	336602	.	N	.	.	.	.	GT	./.
-NC_002945.4	336603	.	N	.	.	.	.	GT	./.
-NC_002945.4	336604	.	N	.	.	.	.	GT	./.
-NC_002945.4	336605	.	N	.	.	.	.	GT	./.
-NC_002945.4	336606	.	N	.	.	.	.	GT	./.
-NC_002945.4	336607	.	N	.	.	.	.	GT	./.
-NC_002945.4	336608	.	N	.	.	.	.	GT	./.
-NC_002945.4	336609	.	N	.	.	.	.	GT	./.
-NC_002945.4	336610	.	N	.	.	.	.	GT	./.
-NC_002945.4	336611	.	N	.	.	.	.	GT	./.
-NC_002945.4	336612	.	N	.	.	.	.	GT	./.
-NC_002945.4	336613	.	N	.	.	.	.	GT	./.
-NC_002945.4	336614	.	N	.	.	.	.	GT	./.
-NC_002945.4	336615	.	N	.	.	.	.	GT	./.
-NC_002945.4	336616	.	N	.	.	.	.	GT	./.
-NC_002945.4	336617	.	N	.	.	.	.	GT	./.
-NC_002945.4	336618	.	N	.	.	.	.	GT	./.
-NC_002945.4	336619	.	N	.	.	.	.	GT	./.
-NC_002945.4	336620	.	N	.	.	.	.	GT	./.
-NC_002945.4	336621	.	N	.	.	.	.	GT	./.
-NC_002945.4	336622	.	N	.	.	.	.	GT	./.
-NC_002945.4	336623	.	N	.	.	.	.	GT	./.
-NC_002945.4	336624	.	N	.	.	.	.	GT	./.
-NC_002945.4	336625	.	N	.	.	.	.	GT	./.
-NC_002945.4	336626	.	N	.	.	.	.	GT	./.
-NC_002945.4	336627	.	N	.	.	.	.	GT	./.
-NC_002945.4	336628	.	N	.	.	.	.	GT	./.
-NC_002945.4	336629	.	N	.	.	.	.	GT	./.
-NC_002945.4	336630	.	N	.	.	.	.	GT	./.
-NC_002945.4	336631	.	N	.	.	.	.	GT	./.
-NC_002945.4	336632	.	N	.	.	.	.	GT	./.
-NC_002945.4	336633	.	N	.	.	.	.	GT	./.
-NC_002945.4	336634	.	N	.	.	.	.	GT	./.
-NC_002945.4	336635	.	N	.	.	.	.	GT	./.
-NC_002945.4	336636	.	N	.	.	.	.	GT	./.
-NC_002945.4	336637	.	N	.	.	.	.	GT	./.
-NC_002945.4	336638	.	N	.	.	.	.	GT	./.
-NC_002945.4	336639	.	N	.	.	.	.	GT	./.
-NC_002945.4	339369	.	N	.	.	.	.	GT	./.
-NC_002945.4	339370	.	N	.	.	.	.	GT	./.
-NC_002945.4	339371	.	N	.	.	.	.	GT	./.
-NC_002945.4	339372	.	N	.	.	.	.	GT	./.
-NC_002945.4	339373	.	N	.	.	.	.	GT	./.
-NC_002945.4	339374	.	N	.	.	.	.	GT	./.
-NC_002945.4	339375	.	N	.	.	.	.	GT	./.
-NC_002945.4	339376	.	N	.	.	.	.	GT	./.
-NC_002945.4	339377	.	N	.	.	.	.	GT	./.
-NC_002945.4	339378	.	N	.	.	.	.	GT	./.
-NC_002945.4	339379	.	N	.	.	.	.	GT	./.
-NC_002945.4	339380	.	N	.	.	.	.	GT	./.
-NC_002945.4	339381	.	N	.	.	.	.	GT	./.
-NC_002945.4	339382	.	N	.	.	.	.	GT	./.
-NC_002945.4	339383	.	N	.	.	.	.	GT	./.
-NC_002945.4	339384	.	N	.	.	.	.	GT	./.
-NC_002945.4	339385	.	N	.	.	.	.	GT	./.
-NC_002945.4	339386	.	N	.	.	.	.	GT	./.
-NC_002945.4	339387	.	N	.	.	.	.	GT	./.
-NC_002945.4	339388	.	N	.	.	.	.	GT	./.
-NC_002945.4	339389	.	N	.	.	.	.	GT	./.
-NC_002945.4	339390	.	N	.	.	.	.	GT	./.
-NC_002945.4	339391	.	N	.	.	.	.	GT	./.
-NC_002945.4	339392	.	N	.	.	.	.	GT	./.
-NC_002945.4	339393	.	N	.	.	.	.	GT	./.
-NC_002945.4	339394	.	N	.	.	.	.	GT	./.
-NC_002945.4	339395	.	N	.	.	.	.	GT	./.
-NC_002945.4	339396	.	N	.	.	.	.	GT	./.
-NC_002945.4	339397	.	N	.	.	.	.	GT	./.
-NC_002945.4	339398	.	N	.	.	.	.	GT	./.
-NC_002945.4	339399	.	N	.	.	.	.	GT	./.
-NC_002945.4	339400	.	N	.	.	.	.	GT	./.
-NC_002945.4	339401	.	N	.	.	.	.	GT	./.
-NC_002945.4	339402	.	N	.	.	.	.	GT	./.
-NC_002945.4	339403	.	N	.	.	.	.	GT	./.
-NC_002945.4	339404	.	N	.	.	.	.	GT	./.
-NC_002945.4	339405	.	N	.	.	.	.	GT	./.
 NC_002945.4	339406	.	N	.	.	.	.	GT	./.
 NC_002945.4	339407	.	N	.	.	.	.	GT	./.
 NC_002945.4	339408	.	N	.	.	.	.	GT	./.
@@ -1061,27 +80,3 @@
 NC_002945.4	366022	.	T	C	4678.56	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=159;CIGAR=1X;DP=159;DPB=159;DPRA=0;EPP=3.35173;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQ=60;MQMR=0;NS=1;NUMALT=1;ODDS=225.026;PAIRED=0.987421;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=5277;QR=0;RO=0;RPL=103;RPP=33.1787;RPPR=0;RPR=56;RUN=1;SAF=89;SAP=7.9405;SAR=70;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:159:0,159:0:0:159:5277:-475.022,-47.8638,0
 NC_002945.4	402148	.	G	T	85.8237	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=4;CIGAR=1X;DP=4;DPB=4;DPRA=0;EPP=11.6962;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQ=40;MQMR=0;NS=1;NUMALT=1;ODDS=10.1503;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=136;QR=0;RO=0;RPL=0;RPP=11.6962;RPPR=0;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:4:0,4:0:0:4:136:-12.1947,-1.20412,0
 NC_002945.4	407246	.	C	G	2433.98	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=91;CIGAR=1X;DP=93;DPB=93;DPRA=0;EPP=7.04303;EPPR=0;GTI=0;LEN=1;MEANALT=2;MQ=60;MQMR=0;NS=1;NUMALT=1;ODDS=130.758;PAIRED=0.989011;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=2860;QR=0;RO=0;RPL=42;RPP=4.17955;RPPR=0;RPR=49;RUN=1;SAF=14;SAP=97.7199;SAR=77;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:93:0,91:0:0:91:2860:-257.436,-27.3937,0
-NC_002945.4	430077	.	C	T	6487.12	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=210;CIGAR=1X;DP=211;DPB=211;DPRA=0;EPP=3.05166;EPPR=0;GTI=0;LEN=1;MEANALT=2;MQ=60;MQMR=0;NS=1;NUMALT=1;ODDS=295.727;PAIRED=0.995238;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=7257;QR=0;RO=0;RPL=114;RPP=6.36057;RPPR=0;RPR=96;RUN=1;SAF=110;SAP=4.04433;SAR=100;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:211:0,210:0:0:210:7257:-652.932,-63.2163,0
-NC_002945.4	438482	.	C	G	2522.44	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=88;CIGAR=1X;DP=89;DPB=89;DPRA=0;EPP=19.6912;EPPR=0;GTI=0;LEN=1;MEANALT=2;MQ=60;MQMR=0;NS=1;NUMALT=1;ODDS=126.599;PAIRED=0.977273;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=2910;QR=0;RO=0;RPL=27;RPP=31.5356;RPPR=0;RPR=61;RUN=1;SAF=30;SAP=22.3561;SAR=58;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:89:0,88:0:0:88:2910:-261.971,-26.4906,0
-NC_002945.4	441762	.	C	T	3223.01	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=114;CIGAR=1X;DP=118;DPB=118;DPRA=0;EPP=3.08649;EPPR=5.18177;GTI=0;LEN=1;MEANALT=2;MQ=60;MQMR=60;NS=1;NUMALT=1;ODDS=158.877;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3640;QR=12;RO=1;RPL=71;RPP=17.9439;RPPR=5.18177;RPR=43;RUN=1;SAF=51;SAP=5.75321;SAR=63;SRF=1;SRP=5.18177;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:118:1,114:1:12:114:3640:-326.556,-33.5385,0
-NC_002945.4	449922	.	T	C	4823.83	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=160;CIGAR=1X;DP=161;DPB=161;DPRA=0;EPP=4.36747;EPPR=5.18177;GTI=0;LEN=1;MEANALT=1;MQ=59.5938;MQMR=60;NS=1;NUMALT=1;ODDS=221.573;PAIRED=0.98125;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=5447;QR=14;RO=1;RPL=55;RPP=36.9396;RPPR=5.18177;RPR=105;RUN=1;SAF=76;SAP=3.87889;SAR=84;SRF=1;SRP=5.18177;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:161:1,160:1:14:160:5447:-488.732,-47.0658,0
-NC_002945.4	452398	.	G	A	5682.95	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=191;CIGAR=1X;DP=193;DPB=193;DPRA=0;EPP=8.02401;EPPR=0;GTI=0;LEN=1;MEANALT=2;MQ=60;MQMR=0;NS=1;NUMALT=1;ODDS=269.387;PAIRED=0.994764;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=6375;QR=0;RO=0;RPL=108;RPP=10.1159;RPPR=0;RPR=83;RUN=1;SAF=86;SAP=7.1145;SAR=105;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:193:0,191:0:0:191:6375:-573.63,-57.4967,0
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-NC_002945.4	467343	.	C	T	4694.23	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=159;CIGAR=1X;DP=163;DPB=163;DPRA=0;EPP=5.31834;EPPR=5.18177;GTI=0;LEN=1;MEANALT=2;MQ=60;MQMR=60;NS=1;NUMALT=1;ODDS=220.934;PAIRED=0.981132;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=5264;QR=12;RO=1;RPL=80;RPP=3.02396;RPPR=5.18177;RPR=79;RUN=1;SAF=72;SAP=6.08314;SAR=87;SRF=1;SRP=5.18177;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:163:1,159:1:12:159:5264:-472.655,-47.0865,0
-NC_002945.4	467402	.	C	A	5465.13	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=182;CIGAR=1X;DP=183;DPB=183;DPRA=0;EPP=3.43982;EPPR=5.18177;GTI=0;LEN=1;MEANALT=1;MQ=60;MQMR=60;NS=1;NUMALT=1;ODDS=249.181;PAIRED=0.978022;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=6135;QR=26;RO=1;RPL=87;RPP=3.77389;RPPR=5.18177;RPR=95;RUN=1;SAF=85;SAP=4.72839;SAR=97;SRF=1;SRP=5.18177;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:183:1,182:1:26:182:6135:-549.586,-52.4887,0
-NC_002945.4	479644	.	G	A	6502.05	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=213;CIGAR=1X;DP=213;DPB=213;DPRA=0;EPP=3.50984;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQ=60;MQMR=0;NS=1;NUMALT=1;ODDS=299.886;PAIRED=0.971831;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=7282;QR=0;RO=0;RPL=118;RPP=8.4033;RPPR=0;RPR=95;RUN=1;SAF=93;SAP=10.4422;SAR=120;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:213:0,213:0:0:213:7282:-655.323,-64.1194,0
-NC_002945.4	483845	.	T	C	6908.05	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=226;CIGAR=1X;DP=226;DPB=226;DPRA=0;EPP=4.39389;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQ=59.6947;MQMR=0;NS=1;NUMALT=1;ODDS=317.908;PAIRED=0.986726;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=7736;QR=0;RO=0;RPL=115;RPP=3.16403;RPPR=0;RPR=111;RUN=1;SAF=110;SAP=3.3562;SAR=116;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:226:0,226:0:0:226:7736:-694.819,-68.0328,0
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