Mercurial > repos > greg > vsnp_get_snps
view test-data/SRR8073662_zc.vcf @ 2:7471707d3fb4 draft
Uploaded
| author | greg |
|---|---|
| date | Sat, 14 Nov 2020 09:16:04 +0000 |
| parents | ee4ef1fc23c6 |
| children | da20c7c76d06 |
line wrap: on
line source
##fileformat=VCFv4.2 ##fileDate=20190125 ##source=freeBayes v1.2.0-dirty ##reference=/scratch/analysis_staging/a_script/vcf_test_files_sra_downloaded_2019-01-23/SRR8073662/NC_002945v4.fasta ##contig=<ID=NC_002945.4,length=4349904> ##phasing=none ##commandline="freebayes -E -1 -e 1 -u --strict-vcf -f /scratch/analysis_staging/a_script/vcf_test_files_sra_downloaded_2019-01-23/SRR8073662/NC_002945v4.fasta /scratch/analysis_staging/a_script/vcf_test_files_sra_downloaded_2019-01-23/SRR8073662/SRR8073662-nodup.bam --region NC_002945.4:0-100000 ##filter="QUAL > 20 ##INFO=<ID=NS,Number=1,Type=Integer,Description="Number of samples with data"> ##INFO=<ID=DP,Number=1,Type=Integer,Description="Total read depth at the locus"> ##INFO=<ID=DPB,Number=1,Type=Float,Description="Total read depth per bp at the locus; bases in reads overlapping / bases in haplotype"> ##INFO=<ID=AC,Number=A,Type=Integer,Description="Total number of alternate alleles in called genotypes"> ##INFO=<ID=AN,Number=1,Type=Integer,Description="Total number of alleles in called genotypes"> ##INFO=<ID=AF,Number=A,Type=Float,Description="Estimated allele frequency in the range (0,1]"> ##INFO=<ID=RO,Number=1,Type=Integer,Description="Count of full observations of the reference haplotype."> ##INFO=<ID=AO,Number=A,Type=Integer,Description="Count of full observations of this alternate haplotype."> ##INFO=<ID=PRO,Number=1,Type=Float,Description="Reference allele observation count, with partial observations recorded fractionally"> ##INFO=<ID=PAO,Number=A,Type=Float,Description="Alternate allele observations, with partial observations recorded fractionally"> ##INFO=<ID=QR,Number=1,Type=Integer,Description="Reference allele quality sum in phred"> ##INFO=<ID=QA,Number=A,Type=Integer,Description="Alternate allele quality sum in phred"> ##INFO=<ID=PQR,Number=1,Type=Float,Description="Reference allele quality sum in phred for partial observations"> ##INFO=<ID=PQA,Number=A,Type=Float,Description="Alternate allele quality sum in phred for partial observations"> ##INFO=<ID=SRF,Number=1,Type=Integer,Description="Number of reference observations on the forward strand"> ##INFO=<ID=SRR,Number=1,Type=Integer,Description="Number of reference observations on the reverse strand"> ##INFO=<ID=SAF,Number=A,Type=Integer,Description="Number of alternate observations on the forward strand"> ##INFO=<ID=SAR,Number=A,Type=Integer,Description="Number of alternate observations on the reverse strand"> ##INFO=<ID=SRP,Number=1,Type=Float,Description="Strand balance probability for the reference allele: Phred-scaled upper-bounds estimate of the probability of observing the deviation between SRF and SRR given E(SRF/SRR) ~ 0.5, derived using Hoeffding's inequality"> ##INFO=<ID=SAP,Number=A,Type=Float,Description="Strand balance probability for the alternate allele: Phred-scaled upper-bounds estimate of the probability of observing the deviation between SAF and SAR given E(SAF/SAR) ~ 0.5, derived using Hoeffding's inequality"> ##INFO=<ID=AB,Number=A,Type=Float,Description="Allele balance at heterozygous sites: a number between 0 and 1 representing the ratio of reads showing the reference allele to all reads, considering only reads from individuals called as heterozygous"> ##INFO=<ID=ABP,Number=A,Type=Float,Description="Allele balance probability at heterozygous sites: Phred-scaled upper-bounds estimate of the probability of observing the deviation between ABR and ABA given E(ABR/ABA) ~ 0.5, derived using Hoeffding's inequality"> ##INFO=<ID=RUN,Number=A,Type=Integer,Description="Run length: the number of consecutive repeats of the alternate allele in the reference genome"> ##INFO=<ID=RPP,Number=A,Type=Float,Description="Read Placement Probability: Phred-scaled upper-bounds estimate of the probability of observing the deviation between RPL and RPR given E(RPL/RPR) ~ 0.5, derived using Hoeffding's inequality"> ##INFO=<ID=RPPR,Number=1,Type=Float,Description="Read Placement Probability for reference observations: Phred-scaled upper-bounds estimate of the probability of observing the deviation between RPL and RPR given E(RPL/RPR) ~ 0.5, derived using Hoeffding's inequality"> ##INFO=<ID=RPL,Number=A,Type=Float,Description="Reads Placed Left: number of reads supporting the alternate balanced to the left (5') of the alternate allele"> ##INFO=<ID=RPR,Number=A,Type=Float,Description="Reads Placed Right: number of reads supporting the alternate balanced to the right (3') of the alternate allele"> ##INFO=<ID=EPP,Number=A,Type=Float,Description="End Placement Probability: Phred-scaled upper-bounds estimate of the probability of observing the deviation between EL and ER given E(EL/ER) ~ 0.5, derived using Hoeffding's inequality"> ##INFO=<ID=EPPR,Number=1,Type=Float,Description="End Placement Probability for reference observations: Phred-scaled upper-bounds estimate of the probability of observing the deviation between EL and ER given E(EL/ER) ~ 0.5, derived using Hoeffding's inequality"> ##INFO=<ID=DPRA,Number=A,Type=Float,Description="Alternate allele depth ratio. Ratio between depth in samples with each called alternate allele and those without."> ##INFO=<ID=ODDS,Number=1,Type=Float,Description="The log odds ratio of the best genotype combination to the second-best."> ##INFO=<ID=GTI,Number=1,Type=Integer,Description="Number of genotyping iterations required to reach convergence or bailout."> ##INFO=<ID=TYPE,Number=A,Type=String,Description="The type of allele, either snp, mnp, ins, del, or complex."> ##INFO=<ID=CIGAR,Number=A,Type=String,Description="The extended CIGAR representation of each alternate allele, with the exception that '=' is replaced by 'M' to ease VCF parsing. Note that INDEL alleles do not have the first matched base (which is provided by default, per the spec) referred to by the CIGAR."> ##INFO=<ID=NUMALT,Number=1,Type=Integer,Description="Number of unique non-reference alleles in called genotypes at this position."> ##INFO=<ID=MEANALT,Number=A,Type=Float,Description="Mean number of unique non-reference allele observations per sample with the corresponding alternate alleles."> ##INFO=<ID=LEN,Number=A,Type=Integer,Description="allele length"> ##INFO=<ID=MQM,Number=A,Type=Float,Description="Mean mapping quality of observed alternate alleles"> ##INFO=<ID=MQMR,Number=1,Type=Float,Description="Mean mapping quality of observed reference alleles"> ##INFO=<ID=PAIRED,Number=A,Type=Float,Description="Proportion of observed alternate alleles which are supported by properly paired read fragments"> ##INFO=<ID=PAIREDR,Number=1,Type=Float,Description="Proportion of observed reference alleles which are supported by properly paired read fragments"> ##INFO=<ID=MIN_DP,Number=1,Type=Integer,Description="Minimum depth in gVCF output block."> ##INFO=<ID=END,Number=1,Type=Integer,Description="Last position (inclusive) in gVCF output record."> ##INFO=<ID=technology.ILLUMINA,Number=A,Type=Float,Description="Fraction of observations supporting the alternate observed in reads from ILLUMINA"> ##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype"> ##FORMAT=<ID=GQ,Number=1,Type=Integer,Description="Genotype Quality, the Phred-scaled marginal (or unconditional) probability of the called genotype"> ##FORMAT=<ID=GL,Number=G,Type=Float,Description="Genotype Likelihood, log10-scaled likelihoods of the data given the called genotype for each possible genotype generated from the reference and alternate alleles given the sample ploidy"> ##FORMAT=<ID=DP,Number=1,Type=Integer,Description="Read Depth"> ##FORMAT=<ID=AD,Number=R,Type=Integer,Description="Number of observation for each allele"> ##FORMAT=<ID=RO,Number=1,Type=Integer,Description="Reference allele observation count"> ##FORMAT=<ID=QR,Number=1,Type=Integer,Description="Sum of quality of the reference observations"> ##FORMAT=<ID=AO,Number=A,Type=Integer,Description="Alternate allele observation count"> ##FORMAT=<ID=QA,Number=A,Type=Integer,Description="Sum of quality of the alternate observations"> ##FORMAT=<ID=MIN_DP,Number=1,Type=Integer,Description="Minimum depth in gVCF output block."> #CHROM POS ID REF ALT QUAL FILTER INFO FORMAT SRR8073662 NC_002945.4 1057 . A G 1991.37 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=78;CIGAR=1X;DP=80;DPB=80;DPRA=0;EPP=4.01252;EPPR=0;GTI=0;LEN=1;MEANALT=2;MQ=60;MQMR=0;NS=1;NUMALT=1;ODDS=112.736;PAIRED=0.961538;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=2256;QR=0;RO=0;RPL=41;RPP=3.45573;RPPR=0;RPR=37;RUN=1;SAF=47;SAP=10.1372;SAR=31;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:80:0,78:0:0:78:2256:-203.125,-23.4803,0 NC_002945.4 4480 . T C 1266.94 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=48;CIGAR=1X;DP=49;DPB=49;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=2;MQ=60;MQMR=0;NS=1;NUMALT=1;ODDS=71.1473;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=1446;QR=0;RO=0;RPL=26;RPP=3.73412;RPPR=0;RPR=22;RUN=1;SAF=24;SAP=3.0103;SAR=24;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:49:0,48:0:0:48:1446:-130.232,-14.4494,0 NC_002945.4 8741 . T C 1656.81 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=68;CIGAR=1X;DP=68;DPB=68;DPRA=0;EPP=44.396;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQ=60;MQMR=0;NS=1;NUMALT=1;ODDS=98.8732;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=1927;QR=0;RO=0;RPL=35;RPP=3.13803;RPPR=0;RPR=33;RUN=1;SAF=41;SAP=9.26925;SAR=27;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:68:0,68:0:0:68:1927:-173.649,-20.47,0 NC_002945.4 29061 . C T 1418.86 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=55;CIGAR=1X;DP=56;DPB=56;DPRA=0;EPP=3.36563;EPPR=0;GTI=0;LEN=1;MEANALT=2;MQ=59.8909;MQMR=0;NS=1;NUMALT=1;ODDS=80.8514;PAIRED=0.854545;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=1614;QR=0;RO=0;RPL=22;RPP=7.78754;RPPR=0;RPR=33;RUN=1;SAF=29;SAP=3.36563;SAR=26;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:56:0,55:0:0:55:1614:-145.339,-16.5567,0 NC_002945.4 29470 . N . . . . GT ./. NC_002945.4 29471 . N . . . . GT ./. NC_002945.4 29472 . N . . . . GT ./. NC_002945.4 29473 . N . . . . GT ./. NC_002945.4 29474 . N . . . . GT ./. NC_002945.4 29475 . N . . . . GT ./. NC_002945.4 29476 . N . . . . GT ./. NC_002945.4 29477 . N . . . . GT ./. NC_002945.4 29478 . N . . . . GT ./. NC_002945.4 29479 . N . . . . GT ./. NC_002945.4 29480 . N . . . . GT ./. NC_002945.4 29481 . N . . . . GT ./. NC_002945.4 29482 . N . . . . GT ./. NC_002945.4 29483 . N . . . . GT ./. NC_002945.4 29484 . N . . . . GT ./. NC_002945.4 29485 . N . . . . GT ./. NC_002945.4 29486 . N . . . . GT ./. NC_002945.4 29487 . N . . . . GT ./. NC_002945.4 29488 . N . . . . GT ./. NC_002945.4 29489 . N . . . . GT ./. NC_002945.4 29490 . N . . . . GT ./. NC_002945.4 29491 . N . . . . GT ./. NC_002945.4 29492 . N . . . . GT ./. NC_002945.4 29493 . N . . . . GT ./. NC_002945.4 29494 . N . . . . GT ./. NC_002945.4 29495 . N . . . . GT ./. NC_002945.4 29496 . N . . . . GT ./. NC_002945.4 29497 . N . . . . GT ./. NC_002945.4 29498 . N . . . . GT ./. NC_002945.4 29499 . N . . . . GT ./. NC_002945.4 29500 . N . . . . GT ./. NC_002945.4 29501 . N . . . . GT ./. NC_002945.4 29502 . N . . . . GT ./. NC_002945.4 29503 . N . . . . GT ./. NC_002945.4 29504 . N . . . . GT ./. NC_002945.4 29505 . N . . . . GT ./. NC_002945.4 29506 . N . . . . GT ./. NC_002945.4 29507 . N . . . . GT ./. NC_002945.4 29508 . N . . . . GT ./. NC_002945.4 29509 . N . . . . GT ./. NC_002945.4 29510 . N . . . . GT ./. NC_002945.4 29511 . N . . . . GT ./. NC_002945.4 29512 . N . . . . GT ./. NC_002945.4 29513 . N . . . . GT ./. NC_002945.4 29514 . N . . . . GT ./. NC_002945.4 29515 . N . . . . GT ./. NC_002945.4 29516 . N . . . . GT ./. NC_002945.4 29517 . N . . . . GT ./. NC_002945.4 29518 . N . . . . GT ./. NC_002945.4 29519 . N . . . . GT ./. NC_002945.4 29520 . N . . . . GT ./. NC_002945.4 29521 . N . . . . GT ./. NC_002945.4 29522 . N . . . . GT ./. NC_002945.4 29523 . N . . . . GT ./. NC_002945.4 29524 . N . . . . GT ./. NC_002945.4 29525 . N . . . . GT ./. NC_002945.4 29526 . N . . . . GT ./. NC_002945.4 29527 . N . . . . GT ./. NC_002945.4 29528 . N . . . . GT ./. NC_002945.4 29529 . N . . . . GT ./. NC_002945.4 29530 . N . . . . GT ./. NC_002945.4 29531 . N . . . . GT ./. NC_002945.4 29532 . N . . . . GT ./. NC_002945.4 29533 . N . . . . GT ./. NC_002945.4 29534 . N . . . . GT ./. NC_002945.4 29535 . N . . . . GT ./. NC_002945.4 29536 . N . . . . GT ./. NC_002945.4 29537 . N . . . . GT ./. NC_002945.4 29538 . N . . . . GT ./. NC_002945.4 29539 . N . . . . GT ./. NC_002945.4 29540 . N . . . . GT ./. NC_002945.4 29541 . N . . . . GT ./. NC_002945.4 29542 . N . . . . GT ./. NC_002945.4 29543 . N . . . . GT ./. NC_002945.4 29544 . N . . . . GT ./. NC_002945.4 29545 . N . . . . GT ./. NC_002945.4 29546 . N . . . . GT ./. NC_002945.4 29547 . N . . . . GT ./. NC_002945.4 29548 . N . . . . GT ./. NC_002945.4 29549 . N . . . . GT ./. NC_002945.4 29550 . N . . . . GT ./. NC_002945.4 29551 . N . . . . GT ./. NC_002945.4 29552 . N . . . . GT ./. NC_002945.4 29553 . N . . . . GT ./. NC_002945.4 29554 . N . . . . GT ./. NC_002945.4 29555 . N . . . . GT ./. NC_002945.4 29556 . N . . . . GT ./. NC_002945.4 29557 . N . . . . GT ./. NC_002945.4 29558 . N . . . . GT ./. NC_002945.4 29559 . N . . . . GT ./. NC_002945.4 29560 . N . . . . GT ./. NC_002945.4 29561 . N . . . . GT ./. NC_002945.4 29562 . N . . . . GT ./. NC_002945.4 29563 . N . . . . GT ./. NC_002945.4 29564 . N . . . . GT ./. NC_002945.4 29565 . N . . . . GT ./. NC_002945.4 29566 . N . . . . GT ./. NC_002945.4 29567 . N . . . . GT ./. NC_002945.4 29568 . N . . . . GT ./. NC_002945.4 29569 . N . . . . GT ./. NC_002945.4 29570 . N . . . . GT ./. NC_002945.4 29571 . N . . . . GT ./. NC_002945.4 29572 . N . . . . GT ./. NC_002945.4 29573 . N . . . . GT ./. NC_002945.4 29574 . N . . . . GT ./. NC_002945.4 29575 . N . . . . GT ./. NC_002945.4 29576 . N . . . . GT ./. NC_002945.4 29577 . N . . . . GT ./. NC_002945.4 29578 . N . . . . GT ./. NC_002945.4 29579 . N . . . . GT ./. NC_002945.4 29580 . N . . . . GT ./. NC_002945.4 29581 . N . . . . GT ./. NC_002945.4 29582 . N . . . . GT ./. NC_002945.4 29583 . N . . . . GT ./. NC_002945.4 29584 . N . . . . GT ./. NC_002945.4 29585 . N . . . . GT ./. NC_002945.4 29586 . N . . . . GT ./. NC_002945.4 29587 . N . . . . GT ./. NC_002945.4 29588 . N . . . . GT ./. NC_002945.4 29589 . N . . . . GT ./. NC_002945.4 29590 . N . . . . GT ./. NC_002945.4 29591 . N . . . . GT ./. NC_002945.4 29592 . N . . . . GT ./. NC_002945.4 29593 . N . . . . GT ./. NC_002945.4 29594 . N . . . . GT ./. NC_002945.4 29595 . N . . . . GT ./. NC_002945.4 29596 . N . . . . GT ./. NC_002945.4 29597 . N . . . . GT ./. NC_002945.4 29598 . N . . . . GT ./. NC_002945.4 29599 . N . . . . GT ./. NC_002945.4 29600 . N . . . . GT ./. NC_002945.4 29601 . N . . . . GT ./. NC_002945.4 29602 . N . . . . GT ./. NC_002945.4 29603 . N . . . . GT ./. NC_002945.4 29604 . N . . . . GT ./. NC_002945.4 29605 . N . . . . GT ./. NC_002945.4 29606 . N . . . . GT ./. NC_002945.4 29607 . N . . . . GT ./. NC_002945.4 29608 . N . . . . GT ./. NC_002945.4 29609 . N . . . . GT ./. NC_002945.4 29610 . N . . . . GT ./. NC_002945.4 29611 . N . . . . GT ./. NC_002945.4 29612 . N . . . . GT ./. NC_002945.4 29613 . N . . . . GT ./. NC_002945.4 29614 . N . . . . GT ./. NC_002945.4 29615 . N . . . . GT ./. NC_002945.4 29616 . N . . . . GT ./. NC_002945.4 29617 . N . . . . GT ./. NC_002945.4 29618 . N . . . . GT ./. NC_002945.4 29619 . N . . . . GT ./. NC_002945.4 29620 . N . . . . GT ./. NC_002945.4 29621 . N . . . . GT ./. NC_002945.4 29622 . N . . . . GT ./. NC_002945.4 29623 . N . . . . GT ./. NC_002945.4 29624 . N . . . . GT ./. NC_002945.4 29625 . N . . . . GT ./. NC_002945.4 29626 . N . . . . GT ./. NC_002945.4 29627 . N . . . . GT ./. NC_002945.4 29628 . N . . . . GT ./. NC_002945.4 29629 . N . . . . GT ./. NC_002945.4 29630 . N . . . . GT ./. NC_002945.4 29631 . N . . . . GT ./. NC_002945.4 29632 . N . . . . GT ./. NC_002945.4 29633 . N . . . . GT ./. NC_002945.4 29634 . N . . . . GT ./. NC_002945.4 29635 . N . . . . GT ./. NC_002945.4 29636 . N . . . . GT ./. NC_002945.4 29637 . N . . . . GT ./. NC_002945.4 29638 . N . . . . GT ./. NC_002945.4 29639 . N . . . . GT ./. NC_002945.4 29640 . N . . . . GT ./. NC_002945.4 29641 . N . . . . GT ./. NC_002945.4 29642 . N . . . . GT ./. NC_002945.4 29643 . N . . . . GT ./. NC_002945.4 29644 . N . . . . GT ./. NC_002945.4 29645 . N . . . . GT ./. NC_002945.4 29646 . N . . . . GT ./. NC_002945.4 29647 . N . . . . GT ./. NC_002945.4 29648 . N . . . . GT ./. NC_002945.4 29649 . N . . . . GT ./. NC_002945.4 29650 . N . . . . GT ./. NC_002945.4 29651 . N . . . . GT ./. NC_002945.4 29652 . N . . . . GT ./. NC_002945.4 29653 . N . . . . GT ./. NC_002945.4 29654 . N . . . . GT ./. NC_002945.4 29655 . N . . . . GT ./. NC_002945.4 29656 . N . . . . GT ./. NC_002945.4 29657 . N . . . . GT ./. NC_002945.4 29658 . N . . . . GT ./. NC_002945.4 29659 . N . . . . GT ./. NC_002945.4 29660 . N . . . . GT ./. NC_002945.4 29661 . N . . . . GT ./. NC_002945.4 29662 . N . . . . GT ./. NC_002945.4 29663 . N . . . . GT ./. NC_002945.4 29664 . N . . . . GT ./. NC_002945.4 29665 . N . . . . GT ./. NC_002945.4 29666 . N . . . . GT ./. NC_002945.4 29667 . N . . . . GT ./. NC_002945.4 29668 . N . . . . GT ./. NC_002945.4 29669 . N . . . . GT ./. NC_002945.4 29670 . N . . . . GT ./. NC_002945.4 29671 . N . . . . GT ./. NC_002945.4 29672 . N . . . . GT ./. NC_002945.4 29673 . N . . . . GT ./. NC_002945.4 29674 . N . . . . GT ./. NC_002945.4 29675 . N . . . . GT ./. NC_002945.4 29676 . N . . . . GT ./. NC_002945.4 29677 . N . . . . GT ./. NC_002945.4 29678 . N . . . . GT ./. NC_002945.4 29679 . N . . . . GT ./. NC_002945.4 29680 . N . . . . GT ./. NC_002945.4 29681 . N . . . . GT ./. NC_002945.4 29682 . N . . . . GT ./. NC_002945.4 29683 . N . . . . GT ./. NC_002945.4 29684 . N . . . . GT ./. NC_002945.4 29685 . N . . . . GT ./. NC_002945.4 29686 . N . . . . GT ./. NC_002945.4 29687 . N . . . . GT ./. NC_002945.4 29688 . N . . . . GT ./. NC_002945.4 29689 . N . . . . GT ./. NC_002945.4 29690 . N . . . . GT ./. NC_002945.4 29691 . N . . . . GT ./. NC_002945.4 29692 . N . . . . GT ./. NC_002945.4 29693 . N . . . . GT ./. NC_002945.4 29694 . N . . . . GT ./. NC_002945.4 29695 . N . . . . GT ./. NC_002945.4 29696 . N . . . . GT ./. NC_002945.4 29697 . N . . . . GT ./. NC_002945.4 29698 . N . . . . GT ./. NC_002945.4 29699 . N . . . . GT ./. NC_002945.4 29700 . N . . . . GT ./. NC_002945.4 29701 . N . . . . GT ./. NC_002945.4 29702 . N . . . . GT ./. NC_002945.4 29703 . N . . . . GT ./. NC_002945.4 29704 . N . . . . GT ./. NC_002945.4 29705 . N . . . . GT ./. NC_002945.4 29706 . N . . . . GT ./. NC_002945.4 29707 . N . . . . GT ./. NC_002945.4 29708 . N . . . . GT ./. NC_002945.4 29709 . N . . . . GT ./. NC_002945.4 29710 . N . . . . GT ./. NC_002945.4 29711 . N . . . . GT ./. NC_002945.4 29712 . N . . . . GT ./. NC_002945.4 29713 . N . . . . GT ./. NC_002945.4 29714 . N . . . . GT ./. NC_002945.4 29715 . N . . . . GT ./. NC_002945.4 29716 . N . . . . GT ./. NC_002945.4 29717 . N . . . . GT ./. NC_002945.4 29718 . N . . . . GT ./. NC_002945.4 29719 . N . . . . GT ./. NC_002945.4 29720 . N . . . . GT ./. NC_002945.4 29721 . N . . . . GT ./. NC_002945.4 29722 . N . . . . GT ./. NC_002945.4 29723 . N . . . . GT ./. NC_002945.4 29724 . N . . . . GT ./. NC_002945.4 29725 . N . . . . GT ./. NC_002945.4 29726 . N . . . . GT ./. NC_002945.4 29727 . N . . . . GT ./. NC_002945.4 29728 . N . . . . GT ./. NC_002945.4 29729 . N . . . . GT ./. NC_002945.4 29730 . N . . . . GT ./. NC_002945.4 29731 . N . . . . GT ./. NC_002945.4 29732 . N . . . . GT ./. NC_002945.4 29733 . N . . . . GT ./. NC_002945.4 29734 . N . . . . GT ./. NC_002945.4 29735 . N . . . . GT ./. NC_002945.4 29736 . N . . . . GT ./. NC_002945.4 29737 . N . . . . GT ./. NC_002945.4 29738 . N . . . . GT ./. NC_002945.4 29739 . N . . . . GT ./. NC_002945.4 29740 . N . . . . GT ./. NC_002945.4 29741 . N . . . . GT ./. NC_002945.4 29742 . N . . . . GT ./. NC_002945.4 29743 . N . . . . GT ./. NC_002945.4 29744 . N . . . . GT ./. NC_002945.4 29745 . N . . . . GT ./. NC_002945.4 29746 . N . . . . GT ./. NC_002945.4 29747 . N . . . . GT ./. NC_002945.4 29748 . N . . . . GT ./. NC_002945.4 29749 . N . . . . GT ./. NC_002945.4 29750 . N . . . . GT ./. NC_002945.4 29751 . N . . . . GT ./. NC_002945.4 29752 . N . . . . GT ./. NC_002945.4 29753 . N . . . . GT ./. NC_002945.4 29754 . N . . . . GT ./. NC_002945.4 29755 . N . . . . GT ./. NC_002945.4 29756 . N . . . . GT ./. NC_002945.4 29757 . N . . . . GT ./. NC_002945.4 29758 . N . . . . GT ./. NC_002945.4 29759 . N . . . . GT ./. NC_002945.4 29760 . N . . . . GT ./. NC_002945.4 29761 . N . . . . GT ./. NC_002945.4 29762 . N . . . . GT ./. NC_002945.4 29763 . N . . . . GT ./. NC_002945.4 29764 . N . . . . GT ./. NC_002945.4 29765 . N . . . . GT ./. NC_002945.4 29766 . N . . . . GT ./. NC_002945.4 29767 . N . . . . GT ./. NC_002945.4 29768 . N . . . . GT ./. NC_002945.4 29769 . N . . . . GT ./. NC_002945.4 29770 . N . . . . GT ./. NC_002945.4 29771 . N . . . . GT ./. NC_002945.4 29772 . N . . . . GT ./. NC_002945.4 29773 . N . . . . GT ./. NC_002945.4 29774 . N . . . . GT ./. NC_002945.4 29775 . N . . . . GT ./. NC_002945.4 29776 . N . . . . GT ./. NC_002945.4 29777 . N . . . . GT ./. NC_002945.4 29778 . N . . . . GT ./. NC_002945.4 29779 . N . . . . GT ./. NC_002945.4 29780 . N . . . . GT ./. NC_002945.4 29781 . N . . . . GT ./. NC_002945.4 29782 . N . . . . GT ./. NC_002945.4 29783 . N . . . . GT ./. NC_002945.4 29784 . N . . . . GT ./. NC_002945.4 29785 . N . . . . GT ./. NC_002945.4 29786 . N . . . . GT ./. NC_002945.4 29787 . N . . . . GT ./. NC_002945.4 29788 . N . . . . GT ./. NC_002945.4 29789 . N . . . . GT ./. NC_002945.4 29790 . N . . . . GT ./. NC_002945.4 29791 . N . . . . GT ./. NC_002945.4 29792 . N . . . . GT ./. NC_002945.4 29793 . N . . . . GT ./. NC_002945.4 29794 . N . . . . GT ./. NC_002945.4 29795 . N . . . . GT ./. NC_002945.4 29796 . N . . . . GT ./. NC_002945.4 29797 . N . . . . GT ./. NC_002945.4 29798 . N . . . . GT ./. NC_002945.4 29799 . N . . . . GT ./. NC_002945.4 29800 . N . . . . GT ./. NC_002945.4 29801 . N . . . . GT ./. NC_002945.4 29802 . N . . . . GT ./. NC_002945.4 29803 . N . . . . GT ./. NC_002945.4 29804 . N . . . . GT ./. NC_002945.4 29805 . N . . . . GT ./. NC_002945.4 29806 . N . . . . GT ./. NC_002945.4 29807 . N . . . . GT ./. NC_002945.4 29808 . N . . . . GT ./. NC_002945.4 29809 . N . . . . GT ./. NC_002945.4 29810 . N . . . . GT ./. NC_002945.4 29811 . N . . . . GT ./. NC_002945.4 29812 . N . . . . GT ./. NC_002945.4 29813 . N . . . . GT ./. NC_002945.4 29814 . N . . . . GT ./. NC_002945.4 29815 . N . . . . GT ./. NC_002945.4 29816 . N . . . . GT ./. NC_002945.4 29817 . N . . . . GT ./. NC_002945.4 29818 . N . . . . GT ./. NC_002945.4 29819 . N . . . . GT ./. NC_002945.4 29820 . N . . . . GT ./. NC_002945.4 29821 . N . . . . GT ./. NC_002945.4 29822 . N . . . . GT ./. NC_002945.4 29823 . N . . . . GT ./. NC_002945.4 29824 . N . . . . GT ./. NC_002945.4 29825 . N . . . . GT ./. NC_002945.4 29826 . N . . . . GT ./. NC_002945.4 29827 . N . . . . GT ./. NC_002945.4 29828 . N . . . . GT ./. NC_002945.4 29829 . N . . . . GT ./. NC_002945.4 29830 . N . . . . GT ./. NC_002945.4 29831 . N . . . . GT ./. NC_002945.4 29832 . N . . . . GT ./. NC_002945.4 29833 . N . . . . GT ./. NC_002945.4 29834 . N . . . . GT ./. NC_002945.4 29835 . N . . . . GT ./. NC_002945.4 29836 . N . . . . GT ./. NC_002945.4 29837 . N . . . . GT ./. NC_002945.4 29838 . N . . . . GT ./. NC_002945.4 29839 . N . . . . GT ./. NC_002945.4 29840 . N . . . . GT ./. NC_002945.4 29841 . N . . . . GT ./. NC_002945.4 29842 . N . . . . GT ./. NC_002945.4 29843 . N . . . . GT ./. NC_002945.4 29844 . N . . . . GT ./. NC_002945.4 29845 . N . . . . GT ./. NC_002945.4 29846 . N . . . . GT ./. NC_002945.4 29847 . N . . . . GT ./. NC_002945.4 29848 . N . . . . GT ./. NC_002945.4 29849 . N . . . . GT ./. NC_002945.4 29850 . N . . . . GT ./. NC_002945.4 29851 . N . . . . GT ./. NC_002945.4 29852 . N . . . . GT ./. NC_002945.4 29853 . N . . . . GT ./. NC_002945.4 29854 . N . . . . GT ./. NC_002945.4 29855 . N . . . . GT ./. NC_002945.4 29856 . N . . . . GT ./. NC_002945.4 29857 . N . . . . GT ./. NC_002945.4 29858 . N . . . . GT ./. NC_002945.4 29859 . N . . . . GT ./. NC_002945.4 29860 . N . . . . GT ./. NC_002945.4 29861 . N . . . . GT ./. NC_002945.4 29862 . N . . . . GT ./. NC_002945.4 29863 . N . . . . GT ./. NC_002945.4 29864 . N . . . . GT ./. NC_002945.4 29865 . N . . . . GT ./. NC_002945.4 29866 . N . . . . GT ./. NC_002945.4 29867 . N . . . . GT ./. NC_002945.4 29868 . N . . . . GT ./. NC_002945.4 29869 . N . . . . GT ./. NC_002945.4 29870 . N . . . . GT ./. NC_002945.4 29871 . N . . . . GT ./. NC_002945.4 29872 . N . . . . GT ./. NC_002945.4 29873 . N . . . . GT ./. NC_002945.4 29874 . N . . . . GT ./. NC_002945.4 29875 . N . . . . GT ./. NC_002945.4 29876 . N . . . . GT ./. NC_002945.4 29877 . N . . . . GT ./. NC_002945.4 29878 . N . . . . GT ./. NC_002945.4 29879 . N . . . . GT ./. NC_002945.4 29880 . N . . . . GT ./. NC_002945.4 29881 . N . . . . GT ./. NC_002945.4 29882 . N . . . . GT ./. NC_002945.4 29883 . N . . . . GT ./. NC_002945.4 29884 . N . . . . GT ./. NC_002945.4 29885 . N . . . . GT ./. NC_002945.4 29886 . N . . . . GT ./. NC_002945.4 29887 . N . . . . GT ./. NC_002945.4 29888 . N . . . . GT ./. NC_002945.4 29889 . N . . . . GT ./. NC_002945.4 29890 . N . . . . GT ./. NC_002945.4 29891 . N . . . . GT ./. NC_002945.4 29892 . N . . . . GT ./. NC_002945.4 29893 . N . . . . GT ./. NC_002945.4 29894 . N . . . . GT ./. NC_002945.4 29895 . N . . . . GT ./. NC_002945.4 29896 . N . . . . GT ./. NC_002945.4 29897 . N . . . . GT ./. NC_002945.4 29898 . N . . . . GT ./. NC_002945.4 29899 . N . . . . GT ./. NC_002945.4 29900 . N . . . . GT ./. NC_002945.4 29901 . N . . . . GT ./. NC_002945.4 29902 . N . . . . GT ./. NC_002945.4 29903 . N . . . . GT ./. NC_002945.4 29904 . N . . . . GT ./. NC_002945.4 29905 . N . . . . GT ./. NC_002945.4 29906 . N . . . . GT ./. NC_002945.4 29907 . N . . . . GT ./. NC_002945.4 29908 . N . . . . GT ./. NC_002945.4 29909 . N . . . . GT ./. NC_002945.4 29910 . N . . . . GT ./. NC_002945.4 29911 . N . . . . GT ./. NC_002945.4 29912 . N . . . . GT ./. NC_002945.4 29913 . N . . . . GT ./. NC_002945.4 29914 . N . . . . GT ./. NC_002945.4 29915 . N . . . . GT ./. NC_002945.4 29916 . N . . . . GT ./. NC_002945.4 29917 . N . . . . GT ./. NC_002945.4 29918 . N . . . . GT ./. NC_002945.4 29919 . N . . . . GT ./. NC_002945.4 29920 . N . . . . GT ./. NC_002945.4 29921 . N . . . . GT ./. NC_002945.4 29922 . N . . . . GT ./. NC_002945.4 29923 . N . . . . GT ./. NC_002945.4 29924 . N . . . . GT ./. NC_002945.4 29925 . N . . . . GT ./. NC_002945.4 29926 . N . . . . GT ./. NC_002945.4 29927 . N . . . . GT ./. NC_002945.4 29928 . N . . . . GT ./. NC_002945.4 29929 . N . . . . GT ./. NC_002945.4 29930 . N . . . . GT ./. NC_002945.4 29931 . N . . . . GT ./. NC_002945.4 29932 . N . . . . GT ./. NC_002945.4 29933 . N . . . . GT ./. NC_002945.4 29934 . N . . . . GT ./. NC_002945.4 29935 . N . . . . GT ./. NC_002945.4 29936 . N . . . . GT ./. NC_002945.4 29937 . N . . . . GT ./. NC_002945.4 29938 . N . . . . GT ./. NC_002945.4 29939 . N . . . . GT ./. NC_002945.4 29940 . N . . . . GT ./. NC_002945.4 29941 . N . . . . GT ./. NC_002945.4 29942 . N . . . . GT ./. NC_002945.4 29943 . N . . . . GT ./. NC_002945.4 29944 . N . . . . GT ./. NC_002945.4 29945 . N . . . . GT ./. NC_002945.4 29946 . N . . . . GT ./. NC_002945.4 29947 . N . . . . GT ./. NC_002945.4 29948 . N . . . . GT ./. NC_002945.4 29949 . N . . . . GT ./. NC_002945.4 29950 . N . . . . GT ./. NC_002945.4 29951 . N . . . . GT ./. NC_002945.4 29952 . N . . . . GT ./. NC_002945.4 29953 . N . . . . GT ./. NC_002945.4 29954 . N . . . . GT ./. NC_002945.4 29955 . N . . . . GT ./. NC_002945.4 29956 . N . . . . GT ./. NC_002945.4 29957 . N . . . . GT ./. NC_002945.4 29958 . N . . . . GT ./. NC_002945.4 29959 . N . . . . GT ./. NC_002945.4 29960 . N . . . . GT ./. NC_002945.4 29961 . N . . . . GT ./. NC_002945.4 29962 . N . . . . GT ./. NC_002945.4 29963 . N . . . . GT ./. NC_002945.4 29964 . N . . . . GT ./. NC_002945.4 29965 . N . . . . GT ./. NC_002945.4 29966 . N . . . . GT ./. NC_002945.4 29967 . N . . . . GT ./. NC_002945.4 29968 . N . . . . GT ./. NC_002945.4 29969 . N . . . . GT ./. NC_002945.4 29970 . N . . . . GT ./. NC_002945.4 29971 . N . . . . GT ./. NC_002945.4 29972 . N . . . . GT ./. NC_002945.4 29973 . N . . . . GT ./. NC_002945.4 29974 . N . . . . GT ./. NC_002945.4 29975 . N . . . . GT ./. NC_002945.4 29976 . N . . . . GT ./. NC_002945.4 29977 . N . . . . GT ./. NC_002945.4 29978 . N . . . . GT ./. NC_002945.4 29979 . N . . . . GT ./. NC_002945.4 29980 . N . . . . GT ./. NC_002945.4 29981 . N . . . . GT ./. NC_002945.4 29982 . N . . . . GT ./. NC_002945.4 29983 . N . . . . GT ./. NC_002945.4 29984 . N . . . . GT ./. NC_002945.4 29985 . N . . . . GT ./. NC_002945.4 29986 . N . . . . GT ./. NC_002945.4 29987 . N . . . . GT ./. NC_002945.4 29988 . N . . . . GT ./. NC_002945.4 29989 . N . . . . GT ./. NC_002945.4 29990 . N . . . . GT ./. NC_002945.4 29991 . N . . . . GT ./. NC_002945.4 29992 . N . . . . GT ./. NC_002945.4 29993 . N . . . . GT ./. NC_002945.4 29994 . N . . . . GT ./. NC_002945.4 29995 . N . . . . GT ./. NC_002945.4 29996 . N . . . . GT ./. NC_002945.4 29997 . N . . . . GT ./. NC_002945.4 29998 . N . . . . GT ./. NC_002945.4 29999 . N . . . . GT ./. NC_002945.4 30000 . N . . . . GT ./. NC_002945.4 30001 . N . . . . GT ./. NC_002945.4 30002 . N . . . . GT ./. NC_002945.4 30003 . N . . . . GT ./. NC_002945.4 30004 . N . . . . GT ./. NC_002945.4 30005 . N . . . . GT ./. NC_002945.4 30006 . N . . . . GT ./. NC_002945.4 30007 . N . . . . GT ./. NC_002945.4 30008 . N . . . . GT ./. NC_002945.4 30009 . N . . . . GT ./. NC_002945.4 30010 . N . . . . GT ./. NC_002945.4 30011 . N . . . . GT ./. NC_002945.4 30012 . N . . . . GT ./. NC_002945.4 30013 . N . . . . GT ./. NC_002945.4 30014 . N . . . . GT ./. NC_002945.4 30015 . N . . . . GT ./. NC_002945.4 30016 . N . . . . GT ./. NC_002945.4 30017 . N . . . . GT ./. NC_002945.4 30018 . N . . . . GT ./. NC_002945.4 30019 . N . . . . GT ./. NC_002945.4 30020 . N . . . . GT ./. NC_002945.4 30021 . N . . . . GT ./. NC_002945.4 30022 . N . . . . GT ./. NC_002945.4 30023 . N . . . . GT ./. NC_002945.4 30024 . N . . . . GT ./. NC_002945.4 30025 . N . . . . GT ./. NC_002945.4 30026 . N . . . . GT ./. NC_002945.4 30027 . N . . . . GT ./. NC_002945.4 30028 . N . . . . GT ./. NC_002945.4 30029 . N . . . . GT ./. NC_002945.4 30030 . N . . . . GT ./. NC_002945.4 30031 . N . . . . GT ./. NC_002945.4 30032 . N . . . . GT ./. NC_002945.4 30033 . N . . . . GT ./. NC_002945.4 30034 . N . . . . GT ./. NC_002945.4 30035 . N . . . . GT ./. NC_002945.4 30036 . N . . . . GT ./. NC_002945.4 30037 . N . . . . GT ./. NC_002945.4 30038 . N . . . . GT ./. NC_002945.4 30039 . N . . . . GT ./. NC_002945.4 30040 . N . . . . GT ./. NC_002945.4 30041 . N . . . . GT ./. NC_002945.4 30042 . N . . . . GT ./. NC_002945.4 30043 . N . . . . GT ./. NC_002945.4 30044 . N . . . . GT ./. NC_002945.4 30045 . N . . . . GT ./. NC_002945.4 30046 . N . . . . GT ./. NC_002945.4 30047 . N . . . . GT ./. NC_002945.4 30048 . N . . . . GT ./. NC_002945.4 30049 . N . . . . GT ./. NC_002945.4 30050 . N . . . . GT ./. NC_002945.4 30051 . N . . . . GT ./. NC_002945.4 30052 . N . . . . GT ./. NC_002945.4 30053 . N . . . . GT ./. NC_002945.4 30054 . N . . . . GT ./. NC_002945.4 30055 . N . . . . GT ./. NC_002945.4 30056 . N . . . . GT ./. NC_002945.4 30057 . N . . . . GT ./. NC_002945.4 30058 . N . . . . GT ./. NC_002945.4 30059 . N . . . . GT ./. NC_002945.4 30060 . N . . . . GT ./. NC_002945.4 30061 . N . . . . GT ./. NC_002945.4 30062 . N . . . . GT ./. NC_002945.4 30063 . N . . . . GT ./. NC_002945.4 30064 . N . . . . GT ./. NC_002945.4 30065 . N . . . . GT ./. NC_002945.4 30066 . N . . . . GT ./. NC_002945.4 30067 . N . . . . GT ./. NC_002945.4 30068 . N . . . . GT ./. NC_002945.4 30069 . N . . . . GT ./. NC_002945.4 30070 . N . . . . GT ./. NC_002945.4 30071 . N . . . . GT ./. NC_002945.4 30072 . N . . . . GT ./. NC_002945.4 30073 . N . . . . GT ./. NC_002945.4 30074 . N . . . . GT ./. NC_002945.4 30075 . N . . . . GT ./. NC_002945.4 30076 . N . . . . GT ./. NC_002945.4 30077 . N . . . . GT ./. NC_002945.4 30078 . N . . . . GT ./. NC_002945.4 30079 . N . . . . GT ./. NC_002945.4 30080 . N . . . . GT ./. NC_002945.4 30081 . N . . . . GT ./. NC_002945.4 30082 . N . . . . GT ./. NC_002945.4 33788 . A G 1024.83 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=40;CIGAR=1X;DP=40;DPB=40;DPRA=0;EPP=3.22745;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQ=60;MQMR=0;NS=1;NUMALT=1;ODDS=60.0569;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=1290;QR=0;RO=0;RPL=21;RPP=3.22745;RPPR=0;RPR=19;RUN=1;SAF=40;SAP=89.8692;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:40:0,40:0:0:40:1290:-116.37,-12.0412,0 NC_002945.4 41228 . A C 1797.65 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=61;CIGAR=1X;DP=64;DPB=64;DPRA=0;EPP=3.0459;EPPR=9.52472;GTI=0;LEN=1;MEANALT=1;MQ=60;MQMR=60;NS=1;NUMALT=1;ODDS=79.4731;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2059;QR=44;RO=3;RPL=38;RPP=11.0198;RPPR=9.52472;RPR=23;RUN=1;SAF=37;SAP=9.02635;SAR=24;SRF=0;SRP=9.52472;SRR=3;TYPE=snp;technology.ILLUMINA=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:64:3,61:3:44:61:2059:-181.429,-15.1593,0 NC_002945.4 41437 . T C 1685.38 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=61;CIGAR=1X;DP=62;DPB=62;DPRA=0;EPP=3.90025;EPPR=0;GTI=0;LEN=1;MEANALT=2;MQ=60;MQMR=0;NS=1;NUMALT=1;ODDS=89.1691;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=1906;QR=0;RO=0;RPL=32;RPP=3.33068;RPPR=0;RPR=29;RUN=1;SAF=31;SAP=3.0459;SAR=30;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:62:0,61:0:0:61:1906:-171.638,-18.3628,0 NC_002945.4 50470 . C T 1433.48 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=50;CIGAR=1X;DP=50;DPB=50;DPRA=0;EPP=3.70517;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQ=60;MQMR=0;NS=1;NUMALT=1;ODDS=73.9199;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=1628;QR=0;RO=0;RPL=27;RPP=3.70517;RPPR=0;RPR=23;RUN=1;SAF=20;SAP=7.35324;SAR=30;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:50:0,50:0:0:50:1628:-146.762,-15.0515,0 NC_002945.4 59861 . A G 1400.02 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=50;CIGAR=1X;DP=50;DPB=50;DPRA=0;EPP=3.70517;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQ=60;MQMR=0;NS=1;NUMALT=1;ODDS=73.9199;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=1593;QR=0;RO=0;RPL=29;RPP=5.78978;RPPR=0;RPR=21;RUN=1;SAF=30;SAP=7.35324;SAR=20;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:50:0,50:0:0:50:1593:-143.621,-15.0515,0 NC_002945.4 69913 . T C 2316.87 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=83;CIGAR=1X;DP=83;DPB=83;DPRA=0;EPP=8.89682;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQ=60;MQMR=0;NS=1;NUMALT=1;ODDS=119.668;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=2614;QR=0;RO=0;RPL=40;RPP=3.24576;RPPR=0;RPR=43;RUN=1;SAF=42;SAP=3.03646;SAR=41;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:83:0,83:0:0:83:2614:-235.474,-24.9855,0 NC_002945.4 70082 . G A 2349.87 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=84;CIGAR=1X;DP=88;DPB=88;DPRA=0;EPP=3.1137;EPPR=0;GTI=0;LEN=1;MEANALT=2;MQ=60;MQMR=0;NS=1;NUMALT=1;ODDS=121.054;PAIRED=0.988095;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=2659;QR=0;RO=0;RPL=51;RPP=11.386;RPPR=0;RPR=33;RUN=1;SAF=36;SAP=6.73282;SAR=48;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:88:0,84:0:0:84:2659:-239.385,-25.2865,0 NC_002945.4 70438 . A G 2173.01 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=77;CIGAR=1X;DP=77;DPB=77;DPRA=0;EPP=6.42261;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQ=60;MQMR=0;NS=1;NUMALT=1;ODDS=111.35;PAIRED=0.987013;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=2457;QR=0;RO=0;RPL=33;RPP=6.42261;RPPR=0;RPR=44;RUN=1;SAF=34;SAP=5.29458;SAR=43;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:77:0,77:0:0:77:2457:-221.331,-23.1793,0 NC_002945.4 79918 . G A 1704.06 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=57;CIGAR=1X;DP=59;DPB=59;DPRA=0;EPP=7.61992;EPPR=7.35324;GTI=0;LEN=1;MEANALT=1;MQ=60;MQMR=60;NS=1;NUMALT=1;ODDS=76.0369;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1944;QR=26;RO=2;RPL=30;RPP=3.35316;RPPR=3.0103;RPR=27;RUN=1;SAF=26;SAP=3.9627;SAR=31;SRF=1;SRP=3.0103;SRR=1;TYPE=snp;technology.ILLUMINA=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:59:2,57:2:26:57:1944:-172.719,-15.2908,0 NC_002945.4 96244 . G A 946.318 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=38;CIGAR=1X;DP=40;DPB=40;DPRA=0;EPP=8.7247;EPPR=7.35324;GTI=0;LEN=1;MEANALT=1;MQ=60;MQMR=60;NS=1;NUMALT=1;ODDS=50.7755;PAIRED=1;PAIREDR=0.5;PAO=0;PQA=0;PQR=0;PRO=0;QA=1116;QR=31;RO=2;RPL=12;RPP=14.2105;RPPR=7.35324;RPR=26;RUN=1;SAF=24;SAP=8.7247;SAR=14;SRF=0;SRP=7.35324;SRR=2;TYPE=snp;technology.ILLUMINA=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:40:2,38:2:31:38:1116:-97.7397,-9.09623,0 NC_002945.4 103811 . C G 554.906 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=23;CIGAR=1X;DP=23;DPB=23;DPRA=0;EPP=7.63648;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQ=50.7391;MQMR=0;NS=1;NUMALT=1;ODDS=36.4899;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=724;QR=0;RO=0;RPL=13;RPP=3.86001;RPPR=0;RPR=10;RUN=1;SAF=6;SAP=14.4341;SAR=17;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:23:0,23:0:0:23:724:-59.5087,-6.92369,0 NC_002945.4 103813 . A G 606.4209999999999 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=23;CIGAR=1X;DP=23;DPB=23;DPRA=0;EPP=7.63648;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQ=50.7391;MQMR=0;NS=1;NUMALT=1;ODDS=36.4899;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=784;QR=0;RO=0;RPL=13;RPP=3.86001;RPPR=0;RPR=10;RUN=1;SAF=6;SAP=14.4341;SAR=17;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:23:0,23:0:0:23:784:-64.6602,-6.92369,0 NC_002945.4 103814 . C G 586.81 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=23;CIGAR=1X;DP=23;DPB=23;DPRA=0;EPP=10.6577;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQ=50.7391;MQMR=0;NS=1;NUMALT=1;ODDS=36.4899;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=768;QR=0;RO=0;RPL=14;RPP=5.3706;RPPR=0;RPR=9;RUN=1;SAF=6;SAP=14.4341;SAR=17;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:23:0,23:0:0:23:768:-63.1462,-6.92369,0 NC_002945.4 110198 . C T 2695.05 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=91;CIGAR=1X;DP=94;DPB=94;DPRA=0;EPP=3.60686;EPPR=0;GTI=0;LEN=1;MEANALT=2;MQ=60;MQMR=0;NS=1;NUMALT=1;ODDS=130.758;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=3034;QR=0;RO=0;RPL=44;RPP=3.22506;RPPR=0;RPR=47;RUN=1;SAF=50;SAP=4.94315;SAR=41;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:94:0,91:0:0:91:3034:-273.013,-27.3937,0 NC_002945.4 114965 . C T 1722.74 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=59;CIGAR=1X;DP=59;DPB=59;DPRA=0;EPP=9.23028;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQ=60;MQMR=0;NS=1;NUMALT=1;ODDS=86.3965;PAIRED=0.983051;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=1959;QR=0;RO=0;RPL=23;RPP=9.23028;RPPR=0;RPR=36;RUN=1;SAF=27;SAP=3.93042;SAR=32;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:59:0,59:0:0:59:1959:-176.553,-17.7608,0 NC_002945.4 117800 . C G 1957.8 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=72;CIGAR=1X;DP=73;DPB=73;DPRA=0;EPP=17.6074;EPPR=5.18177;GTI=0;LEN=1;MEANALT=1;MQ=60;MQMR=60;NS=1;NUMALT=1;ODDS=100.831;PAIRED=0.972222;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2227;QR=12;RO=1;RPL=36;RPP=3.0103;RPPR=5.18177;RPR=36;RUN=1;SAF=37;SAP=3.13094;SAR=35;SRF=0;SRP=5.18177;SRR=1;TYPE=snp;technology.ILLUMINA=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:73:1,72:1:12:72:2227:-199.435,-20.7752,0 NC_002945.4 127447 . G C 1892.36 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=70;CIGAR=1X;DP=70;DPB=70;DPRA=0;EPP=4.99565;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQ=60;MQMR=0;NS=1;NUMALT=1;ODDS=101.646;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=2137;QR=0;RO=0;RPL=36;RPP=3.13438;RPPR=0;RPR=34;RUN=1;SAF=33;SAP=3.50664;SAR=37;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:70:0,70:0:0:70:2137:-192.56,-21.0721,0 NC_002945.4 130166 . C T 1493.38 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=52;CIGAR=1X;DP=55;DPB=55;DPRA=0;EPP=3.17734;EPPR=7.35324;GTI=0;LEN=1;MEANALT=2;MQ=60;MQMR=60;NS=1;NUMALT=1;ODDS=69.1691;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1708;QR=28;RO=2;RPL=25;RPP=3.17734;RPPR=3.0103;RPR=27;RUN=1;SAF=30;SAP=5.68288;SAR=22;SRF=1;SRP=3.0103;SRR=1;TYPE=snp;technology.ILLUMINA=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:55:2,52:2:28:52:1708:-151.305,-13.7356,0 NC_002945.4 130237 . T C 1891.76 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=63;CIGAR=1X;DP=64;DPB=64;DPRA=0;EPP=3.32051;EPPR=0;GTI=0;LEN=1;MEANALT=2;MQ=60;MQMR=0;NS=1;NUMALT=1;ODDS=91.9417;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=2145;QR=0;RO=0;RPL=24;RPP=10.7656;RPPR=0;RPR=39;RUN=1;SAF=35;SAP=4.69922;SAR=28;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:64:0,63:0:0:63:2145:-193.142,-18.9649,0 NC_002945.4 132052 . N . . . . GT ./. NC_002945.4 132620 . N . . . . GT ./. NC_002945.4 132621 . N . . . . GT ./. NC_002945.4 132622 . N . . . . GT ./. NC_002945.4 132623 . N . . . . GT ./. NC_002945.4 132624 . N . . . . GT ./. NC_002945.4 132625 . N . . . . GT ./. NC_002945.4 132626 . N . . . . GT ./. NC_002945.4 132627 . N . . . . GT ./. NC_002945.4 132628 . N . . . . GT ./. NC_002945.4 132629 . N . . . . GT ./. NC_002945.4 132630 . N . . . . GT ./. NC_002945.4 132631 . N . . . . GT ./. NC_002945.4 132632 . N . . . . GT ./. NC_002945.4 132633 . N . . . . GT ./. NC_002945.4 132634 . N . . . . GT ./. NC_002945.4 132635 . N . . . . GT ./. NC_002945.4 132636 . N . . . . GT ./. NC_002945.4 132637 . N . . . . GT ./. NC_002945.4 132638 . N . . . . GT ./. NC_002945.4 132639 . N . . . . GT ./. NC_002945.4 132640 . N . . . . GT ./. NC_002945.4 132641 . N . . . . GT ./. NC_002945.4 132642 . N . . . . GT ./. NC_002945.4 132643 . N . . . . GT ./. NC_002945.4 132644 . N . . . . GT ./. NC_002945.4 132645 . N . . . . GT ./. NC_002945.4 132646 . N . . . . GT ./. NC_002945.4 132647 . N . . . . GT ./. NC_002945.4 132648 . N . . . . GT ./. NC_002945.4 132649 . N . . . . GT ./. NC_002945.4 132650 . N . . . . GT ./. NC_002945.4 132651 . N . . . . GT ./. NC_002945.4 132652 . N . . . . GT ./. NC_002945.4 132653 . N . . . . GT ./. NC_002945.4 132654 . N . . . . GT ./. NC_002945.4 132655 . N . . . . GT ./. NC_002945.4 132656 . N . . . . GT ./. NC_002945.4 132657 . N . . . . GT ./. NC_002945.4 132658 . N . . . . GT ./. NC_002945.4 132659 . N . . . . GT ./. NC_002945.4 132660 . N . . . . GT ./. NC_002945.4 132661 . N . . . . GT ./. NC_002945.4 132662 . N . . . . GT ./. NC_002945.4 132663 . N . . . . GT ./. NC_002945.4 132664 . N . . . . GT ./. NC_002945.4 132665 . N . . . . GT ./. NC_002945.4 132666 . N . . . . GT ./. NC_002945.4 132667 . N . . . . GT ./. NC_002945.4 132668 . N . . . . GT ./. NC_002945.4 132669 . N . . . . GT ./. NC_002945.4 132670 . N . . . . GT ./. NC_002945.4 132671 . N . . . . GT ./. NC_002945.4 132672 . N . . . . GT ./. NC_002945.4 132673 . N . . . . GT ./. NC_002945.4 132674 . N . . . . GT ./. NC_002945.4 140686 . A G 2969.95 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=110;CIGAR=1X;DP=112;DPB=112;DPRA=0;EPP=4.2737;EPPR=0;GTI=0;LEN=1;MEANALT=3;MQ=60;MQMR=0;NS=1;NUMALT=1;ODDS=157.098;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=3362;QR=0;RO=0;RPL=71;RPP=23.2247;RPPR=0;RPR=39;RUN=1;SAF=52;SAP=3.72096;SAR=58;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:112:0,110:0:0:110:3362:-302.582,-33.1133,0 NC_002945.4 143799 . T C 2348.79 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=93;CIGAR=1X;DP=97;DPB=97;DPRA=0;EPP=3.03365;EPPR=7.35324;GTI=0;LEN=1;MEANALT=3;MQ=60;MQMR=60;NS=1;NUMALT=1;ODDS=124.333;PAIRED=0.989247;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2699;QR=37;RO=2;RPL=57;RPP=13.3073;RPPR=7.35324;RPR=36;RUN=1;SAF=31;SAP=25.4488;SAR=62;SRF=0;SRP=7.35324;SRR=2;TYPE=snp;technology.ILLUMINA=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:97:2,93:2:37:93:2699:-239.615,-25.243,0 NC_002945.4 144992 . G A 1419.32 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=51;CIGAR=1X;DP=52;DPB=52;DPRA=0;EPP=3.3935;EPPR=0;GTI=0;LEN=1;MEANALT=2;MQ=60;MQMR=0;NS=1;NUMALT=1;ODDS=75.3062;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=1617;QR=0;RO=0;RPL=19;RPP=10.206;RPPR=0;RPR=32;RUN=1;SAF=28;SAP=4.07475;SAR=23;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:52:0,51:0:0:51:1617:-145.649,-15.3525,0 NC_002945.4 148871 . G A 2283.59 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=78;CIGAR=1X;DP=78;DPB=78;DPRA=0;EPP=3.45573;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQ=59.9231;MQMR=0;NS=1;NUMALT=1;ODDS=112.736;PAIRED=0.974359;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=2572;QR=0;RO=0;RPL=41;RPP=3.45573;RPPR=0;RPR=37;RUN=1;SAF=42;SAP=4.01252;SAR=36;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:78:0,78:0:0:78:2572:-231.682,-23.4803,0 NC_002945.4 149955 . N . . . . GT ./. NC_002945.4 149956 . N . . . . GT ./. NC_002945.4 149957 . N . . . . GT ./. NC_002945.4 149958 . N . . . . GT ./. NC_002945.4 149959 . N . . . . GT ./. NC_002945.4 149960 . N . . . . GT ./. NC_002945.4 149961 . N . . . . GT ./. NC_002945.4 149962 . N . . . . GT ./. NC_002945.4 149963 . N . . . . GT ./. NC_002945.4 149964 . N . . . . GT ./. NC_002945.4 149965 . N . . . . GT ./. NC_002945.4 149966 . N . . . . GT ./. NC_002945.4 149967 . N . . . . GT ./. NC_002945.4 149968 . N . . . . GT ./. NC_002945.4 149969 . N . . . . GT ./. NC_002945.4 149970 . N . . . . GT ./. NC_002945.4 149971 . N . . . . GT ./. NC_002945.4 149972 . N . . . . GT ./. NC_002945.4 149973 . N . . . . GT ./. NC_002945.4 149974 . N . . . . GT ./. NC_002945.4 149975 . N . . . . GT ./. NC_002945.4 149976 . N . . . . GT ./. NC_002945.4 149977 . N . . . . GT ./. NC_002945.4 149978 . N . . . . GT ./. NC_002945.4 149979 . N . . . . GT ./. NC_002945.4 149980 . N . . . . GT ./. NC_002945.4 149981 . N . . . . GT ./. NC_002945.4 149982 . N . . . . GT ./. NC_002945.4 149983 . N . . . . GT ./. NC_002945.4 149984 . N . . . . GT ./. NC_002945.4 149985 . N . . . . GT ./. NC_002945.4 149986 . N . . . . GT ./. NC_002945.4 149987 . N . . . . GT ./. NC_002945.4 149988 . N . . . . GT ./. NC_002945.4 149989 . N . . . . GT ./. NC_002945.4 149990 . N . . . . GT ./. NC_002945.4 149991 . N . . . . GT ./. NC_002945.4 149992 . N . . . . GT ./. NC_002945.4 149993 . N . . . . GT ./. NC_002945.4 149994 . N . . . . GT ./. NC_002945.4 149995 . N . . . . GT ./. NC_002945.4 149996 . N . . . . GT ./. NC_002945.4 149997 . N . . . . GT ./. NC_002945.4 149998 . N . . . . GT ./. NC_002945.4 149999 . N . . . . GT ./. NC_002945.4 150000 . N . . . . GT ./. NC_002945.4 150001 . N . . . . GT ./. NC_002945.4 150002 . N . . . . GT ./. NC_002945.4 150003 . N . . . . GT ./. NC_002945.4 150004 . N . . . . GT ./. NC_002945.4 150005 . N . . . . GT ./. NC_002945.4 150006 . N . . . . GT ./. NC_002945.4 150007 . N . . . . GT ./. NC_002945.4 150008 . N . . . . GT ./. NC_002945.4 150009 . N . . . . GT ./. NC_002945.4 150010 . N . . . . GT ./. NC_002945.4 150011 . N . . . . GT ./. NC_002945.4 150012 . N . . . . GT ./. NC_002945.4 150013 . N . . . . GT ./. NC_002945.4 150014 . N . . . . GT ./. NC_002945.4 150015 . N . . . . GT ./. NC_002945.4 150016 . N . . . . GT ./. NC_002945.4 150017 . N . . . . GT ./. NC_002945.4 150018 . N . . . . GT ./. NC_002945.4 150019 . N . . . . GT ./. NC_002945.4 150020 . N . . . . GT ./. NC_002945.4 150021 . N . . . . GT ./. NC_002945.4 150022 . N . . . . GT ./. NC_002945.4 150023 . N . . . . GT ./. NC_002945.4 150024 . N . . . . GT ./. NC_002945.4 150025 . N . . . . GT ./. NC_002945.4 150026 . N . . . . GT ./. NC_002945.4 150027 . N . . . . GT ./. NC_002945.4 150028 . N . . . . GT ./. NC_002945.4 150029 . N . . . . GT ./. NC_002945.4 150030 . N . . . . GT ./. NC_002945.4 150031 . N . . . . GT ./. NC_002945.4 150032 . N . . . . GT ./. NC_002945.4 150033 . N . . . . GT ./. NC_002945.4 150034 . N . . . . GT ./. NC_002945.4 150035 . N . . . . GT ./. NC_002945.4 150036 . N . . . . GT ./. NC_002945.4 150037 . N . . . . GT ./. NC_002945.4 150038 . N . . . . GT ./. NC_002945.4 150039 . N . . . . GT ./. NC_002945.4 150040 . N . . . . GT ./. NC_002945.4 150041 . N . . . . GT ./. NC_002945.4 150042 . N . . . . GT ./. NC_002945.4 150043 . N . . . . GT ./. NC_002945.4 150044 . N . . . . GT ./. NC_002945.4 150045 . N . . . . GT ./. NC_002945.4 150046 . N . . . . GT ./. NC_002945.4 150047 . N . . . . GT ./. NC_002945.4 150048 . N . . . . GT ./. NC_002945.4 150049 . N . . . . GT ./. NC_002945.4 150050 . N . . . . GT ./. NC_002945.4 150051 . N . . . . GT ./. NC_002945.4 150052 . N . . . . GT ./. NC_002945.4 150053 . N . . . . GT ./. NC_002945.4 150054 . N . . . . GT ./. NC_002945.4 150055 . N . . . . GT ./. NC_002945.4 150056 . N . . . . GT ./. NC_002945.4 150057 . N . . . . GT ./. NC_002945.4 150058 . N . . . . GT ./. NC_002945.4 150059 . N . . . . GT ./. NC_002945.4 150060 . N . . . . GT ./. NC_002945.4 150061 . N . . . . GT ./. NC_002945.4 150062 . N . . . . GT ./. NC_002945.4 150063 . N . . . . GT ./. NC_002945.4 150064 . N . . . . GT ./. NC_002945.4 150065 . N . . . . GT ./. NC_002945.4 150066 . N . . . . GT ./. NC_002945.4 150067 . N . . . . GT ./. NC_002945.4 150068 . N . . . . GT ./. NC_002945.4 150069 . N . . . . GT ./. NC_002945.4 150070 . N . . . . GT ./. NC_002945.4 150071 . N . . . . GT ./. NC_002945.4 150072 . N . . . . GT ./. NC_002945.4 150073 . N . . . . GT ./. NC_002945.4 150074 . N . . . . GT ./. NC_002945.4 150075 . N . . . . GT ./. NC_002945.4 150076 . N . . . . GT ./. NC_002945.4 150077 . N . . . . GT ./. NC_002945.4 150078 . N . . . . GT ./. NC_002945.4 150079 . N . . . . GT ./. NC_002945.4 150080 . N . . . . GT ./. NC_002945.4 150081 . N . . . . GT ./. NC_002945.4 150082 . N . . . . GT ./. NC_002945.4 150083 . N . . . . GT ./. NC_002945.4 150084 . N . . . . GT ./. NC_002945.4 150085 . N . . . . GT ./. NC_002945.4 150086 . N . . . . GT ./. NC_002945.4 150087 . N . . . . GT ./. NC_002945.4 150088 . N . . . . GT ./. NC_002945.4 150089 . N . . . . GT ./. NC_002945.4 150090 . N . . . . GT ./. NC_002945.4 150091 . N . . . . GT ./. NC_002945.4 150092 . N . . . . GT ./. NC_002945.4 150093 . N . . . . GT ./. NC_002945.4 150094 . N . . . . GT ./. NC_002945.4 150095 . N . . . . GT ./. NC_002945.4 150096 . N . . . . GT ./. NC_002945.4 150097 . N . . . . GT ./. NC_002945.4 150098 . N . . . . GT ./. NC_002945.4 150099 . N . . . . GT ./. NC_002945.4 150100 . N . . . . GT ./. NC_002945.4 150101 . N . . . . GT ./. NC_002945.4 150102 . N . . . . GT ./. NC_002945.4 150103 . N . . . . GT ./. NC_002945.4 150104 . N . . . . GT ./. NC_002945.4 150105 . N . . . . GT ./. NC_002945.4 150106 . N . . . . GT ./. NC_002945.4 150107 . N . . . . GT ./. NC_002945.4 150108 . N . . . . GT ./. NC_002945.4 150109 . N . . . . GT ./. NC_002945.4 150110 . N . . . . GT ./. NC_002945.4 150111 . N . . . . GT ./. NC_002945.4 150112 . N . . . . GT ./. NC_002945.4 150113 . N . . . . GT ./. NC_002945.4 150114 . N . . . . GT ./. NC_002945.4 150115 . N . . . . GT ./. NC_002945.4 150116 . N . . . . GT ./. NC_002945.4 150117 . N . . . . GT ./. NC_002945.4 150118 . N . . . . GT ./. NC_002945.4 150119 . N . . . . GT ./. NC_002945.4 150120 . N . . . . GT ./. NC_002945.4 150121 . N . . . . GT ./. NC_002945.4 150122 . N . . . . GT ./. NC_002945.4 150123 . N . . . . GT ./. NC_002945.4 150124 . N . . . . GT ./. NC_002945.4 150125 . N . . . . GT ./. NC_002945.4 150126 . N . . . . GT ./. NC_002945.4 150127 . N . . . . GT ./. NC_002945.4 150128 . N . . . . GT ./. NC_002945.4 150129 . N . . . . GT ./. NC_002945.4 150130 . N . . . . GT ./. NC_002945.4 150131 . N . . . . GT ./. NC_002945.4 150132 . N . . . . GT ./. NC_002945.4 150133 . N . . . . GT ./. NC_002945.4 150134 . N . . . . GT ./. NC_002945.4 150135 . N . . . . GT ./. NC_002945.4 150136 . N . . . . GT ./. NC_002945.4 150137 . N . . . . GT ./. NC_002945.4 150138 . N . . . . GT ./. NC_002945.4 150139 . N . . . . GT ./. NC_002945.4 150140 . N . . . . GT ./. NC_002945.4 150141 . N . . . . GT ./. NC_002945.4 150142 . N . . . . GT ./. NC_002945.4 150143 . N . . . . GT ./. NC_002945.4 151022 . N . . . . GT ./. NC_002945.4 151023 . N . . . . GT ./. NC_002945.4 151024 . N . . . . GT ./. NC_002945.4 151025 . N . . . . GT ./. NC_002945.4 151026 . N . . . . GT ./. NC_002945.4 151027 . N . . . . GT ./. NC_002945.4 151028 . N . . . . GT ./. NC_002945.4 151029 . N . . . . GT ./. NC_002945.4 151030 . N . . . . GT ./. NC_002945.4 151031 . N . . . . GT ./. NC_002945.4 151032 . N . . . . GT ./. NC_002945.4 151033 . N . . . . GT ./. NC_002945.4 151034 . N . . . . GT ./. NC_002945.4 151035 . N . . . . GT ./. NC_002945.4 151036 . N . . . . GT ./. NC_002945.4 151037 . N . . . . GT ./. NC_002945.4 151038 . N . . . . GT ./. NC_002945.4 151039 . N . . . . GT ./. NC_002945.4 151040 . N . . . . GT ./. NC_002945.4 159370 . A G 1749.91 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=62;CIGAR=1X;DP=62;DPB=62;DPRA=0;EPP=3.15039;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQ=60;MQMR=0;NS=1;NUMALT=1;ODDS=90.5554;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=1998;QR=0;RO=0;RPL=42;RPP=19.9618;RPPR=0;RPR=20;RUN=1;SAF=26;SAP=6.51267;SAR=36;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:62:0,62:0:0:62:1998:-180.043,-18.6639,0 NC_002945.4 160535 . T C 1804.25 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=74;CIGAR=1X;DP=76;DPB=76;DPRA=0;EPP=3.12768;EPPR=7.35324;GTI=0;LEN=1;MEANALT=1;MQ=59.8649;MQMR=60;NS=1;NUMALT=1;ODDS=100.699;PAIRED=0.986486;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2050;QR=25;RO=2;RPL=41;RPP=4.88833;RPPR=7.35324;RPR=33;RUN=1;SAF=31;SAP=7.23587;SAR=43;SRF=2;SRP=7.35324;SRR=0;TYPE=snp;technology.ILLUMINA=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:76:2,74:2:25:74:2050:-182.337,-20.5033,0 NC_002945.4 165799 . G A 1394.34 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=48;CIGAR=1X;DP=51;DPB=51;DPRA=0;EPP=5.9056;EPPR=0;GTI=0;LEN=1;MEANALT=3;MQ=60;MQMR=0;NS=1;NUMALT=1;ODDS=71.1473;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=1583;QR=0;RO=0;RPL=25;RPP=3.19126;RPPR=0;RPR=23;RUN=1;SAF=25;SAP=3.19126;SAR=23;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:51:0,48:0:0:48:1583:-142.577,-14.4494,0 NC_002945.4 166696 . A G 1822.75 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=67;CIGAR=1X;DP=67;DPB=67;DPRA=0;EPP=3.30199;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQ=60;MQMR=0;NS=1;NUMALT=1;ODDS=97.4869;PAIRED=0.985075;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=2076;QR=0;RO=0;RPL=34;RPP=3.04271;RPPR=0;RPR=33;RUN=1;SAF=22;SAP=20.1552;SAR=45;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:67:0,67:0:0:67:2076:-187.068,-20.169,0 NC_002945.4 179885 . G A 1895.35 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=77;CIGAR=1X;DP=82;DPB=82;DPRA=0;EPP=3.0385;EPPR=13.8677;GTI=0;LEN=1;MEANALT=1;MQ=60;MQMR=60;NS=1;NUMALT=1;ODDS=98.8465;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2153;QR=60;RO=5;RPL=34;RPP=5.29458;RPPR=13.8677;RPR=43;RUN=1;SAF=41;SAP=3.71532;SAR=36;SRF=5;SRP=13.8677;SRR=0;TYPE=snp;technology.ILLUMINA=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:82:5,77:5:60:77:2153:-188.447,-19.1645,0 NC_002945.4 189083 . A G 1178.55 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=46;CIGAR=1X;DP=46;DPB=46;DPRA=0;EPP=12.2627;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQ=60;MQMR=0;NS=1;NUMALT=1;ODDS=68.3747;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=1359;QR=0;RO=0;RPL=17;RPP=9.80795;RPPR=0;RPR=29;RUN=1;SAF=27;SAP=6.03148;SAR=19;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:46:0,46:0:0:46:1359:-122.54,-13.8474,0 NC_002945.4 192177 . A G 1304.14 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=46;CIGAR=1X;DP=46;DPB=46;DPRA=0;EPP=15.095;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQ=60;MQMR=0;NS=1;NUMALT=1;ODDS=68.3747;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=1491;QR=0;RO=0;RPL=24;RPP=3.19912;RPPR=0;RPR=22;RUN=1;SAF=23;SAP=3.0103;SAR=23;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:46:0,46:0:0:46:1491:-134.434,-13.8474,0 NC_002945.4 198890 . T G 1479.47 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=52;CIGAR=1X;DP=52;DPB=52;DPRA=0;EPP=5.68288;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQ=60;MQMR=0;NS=1;NUMALT=1;ODDS=76.6925;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=1720;QR=0;RO=0;RPL=32;RPP=9.02361;RPPR=0;RPR=20;RUN=1;SAF=12;SAP=35.7494;SAR=40;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:52:0,52:0:0:52:1720:-155.06,-15.6536,0 NC_002945.4 223919 . C T 937.27 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=39;CIGAR=1X;DP=41;DPB=41;DPRA=0;EPP=4.40227;EPPR=5.18177;GTI=0;LEN=1;MEANALT=2;MQ=60;MQMR=60;NS=1;NUMALT=1;ODDS=55.9607;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1080;QR=12;RO=1;RPL=22;RPP=4.40227;RPPR=5.18177;RPR=17;RUN=1;SAF=24;SAP=7.52028;SAR=15;SRF=0;SRP=5.18177;SRR=1;TYPE=snp;technology.ILLUMINA=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:41:1,39:1:12:39:1080:-96.2285,-10.9612,0 NC_002945.4 228109 . C T 1608.55 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=61;CIGAR=1X;DP=62;DPB=62;DPRA=0;EPP=7.31765;EPPR=0;GTI=0;LEN=1;MEANALT=2;MQ=60;MQMR=0;NS=1;NUMALT=1;ODDS=89.1691;PAIRED=0.983607;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=1829;QR=0;RO=0;RPL=32;RPP=3.33068;RPPR=0;RPR=29;RUN=1;SAF=25;SAP=7.31765;SAR=36;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:62:0,61:0:0:61:1829:-164.716,-18.3628,0 NC_002945.4 230661 . A G 1378.76 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=49;CIGAR=1X;DP=49;DPB=49;DPRA=0;EPP=6.59988;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQ=60;MQMR=0;NS=1;NUMALT=1;ODDS=72.5336;PAIRED=0.959184;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=1571;QR=0;RO=0;RPL=23;RPP=3.40914;RPPR=0;RPR=26;RUN=1;SAF=30;SAP=8.37251;SAR=19;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:49:0,49:0:0:49:1571:-141.635,-14.7505,0 NC_002945.4 232188 . G C 899.6439999999999 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=37;CIGAR=1X;DP=37;DPB=37;DPRA=0;EPP=3.5385;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQ=60;MQMR=0;NS=1;NUMALT=1;ODDS=55.8981;PAIRED=0.972973;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=1041;QR=0;RO=0;RPL=22;RPP=5.88603;RPPR=0;RPR=15;RUN=1;SAF=12;SAP=12.9286;SAR=25;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:37:0,37:0:0:37:1041:-93.938,-11.1381,0 NC_002945.4 295519 . T C 1828.28 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=70;CIGAR=1X;DP=71;DPB=71;DPRA=0;EPP=7.47733;EPPR=5.18177;GTI=0;LEN=1;MEANALT=1;MQ=60;MQMR=60;NS=1;NUMALT=1;ODDS=97.1647;PAIRED=0.985714;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2082;QR=16;RO=1;RPL=29;RPP=7.47733;RPPR=5.18177;RPR=41;RUN=1;SAF=32;SAP=4.12706;SAR=38;SRF=0;SRP=5.18177;SRR=1;TYPE=snp;technology.ILLUMINA=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:71:1,70:1:16:70:2082:-185.986,-19.7731,0 NC_002945.4 299636 . A G 2260.51 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=76;CIGAR=1X;DP=76;DPB=76;DPRA=0;EPP=4.03889;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQ=60;MQMR=0;NS=1;NUMALT=1;ODDS=109.964;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=2561;QR=0;RO=0;RPL=27;RPP=16.8392;RPPR=0;RPR=49;RUN=1;SAF=36;SAP=3.46745;SAR=40;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:76:0,76:0:0:76:2561:-230.702,-22.8783,0 NC_002945.4 304339 . G A 2005.61 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=74;CIGAR=1X;DP=77;DPB=77;DPRA=0;EPP=3.47981;EPPR=0;GTI=0;LEN=1;MEANALT=2;MQ=60;MQMR=0;NS=1;NUMALT=1;ODDS=107.191;PAIRED=0.986486;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=2271;QR=0;RO=0;RPL=45;RPP=10.5224;RPPR=0;RPR=29;RUN=1;SAF=38;SAP=3.12768;SAR=36;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:77:0,74:0:0:74:2271:-204.468,-22.2762,0 NC_002945.4 306688 . N . . . . GT ./. NC_002945.4 306689 . N . . . . GT ./. NC_002945.4 306690 . N . . . . GT ./. NC_002945.4 306691 . N . . . . GT ./. NC_002945.4 306692 . N . . . . GT ./. NC_002945.4 306693 . N . . . . GT ./. NC_002945.4 306694 . N . . . . GT ./. NC_002945.4 306695 . N . . . . GT ./. NC_002945.4 306696 . N . . . . GT ./. NC_002945.4 306697 . N . . . . GT ./. NC_002945.4 306698 . N . . . . GT ./. NC_002945.4 306699 . N . . . . GT ./. NC_002945.4 306700 . N . . . . GT ./. NC_002945.4 306701 . N . . . . GT ./. NC_002945.4 306702 . N . . . . GT ./. NC_002945.4 306703 . N . . . . GT ./. NC_002945.4 306704 . N . . . . GT ./. NC_002945.4 306705 . N . . . . GT ./. NC_002945.4 306706 . N . . . . GT ./. NC_002945.4 306707 . N . . . . GT ./. NC_002945.4 306708 . N . . . . GT ./. NC_002945.4 306709 . N . . . . GT ./. NC_002945.4 306710 . N . . . . GT ./. NC_002945.4 319911 . C T 1185.93 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=43;CIGAR=1X;DP=43;DPB=43;DPRA=0;EPP=3.0608;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQ=60;MQMR=0;NS=1;NUMALT=1;ODDS=64.2158;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=1346;QR=0;RO=0;RPL=20;RPP=3.46479;RPPR=0;RPR=23;RUN=1;SAF=22;SAP=3.0608;SAR=21;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:43:0,43:0:0:43:1346:-121.399,-12.9443,0 NC_002945.4 332124 . C T 162.344 . AB=0.7;ABP=6.48466;AC=1;AF=0.5;AN=2;AO=7;CIGAR=1X;DP=10;DPB=10;DPRA=0;EPP=5.80219;EPPR=9.52472;GTI=0;LEN=1;MEANALT=1;MQ=60;MQMR=60;NS=1;NUMALT=1;ODDS=12.1823;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=225;QR=36;RO=3;RPL=7;RPP=18.2106;RPPR=9.52472;RPR=0;RUN=1;SAF=2;SAP=5.80219;SAR=5;SRF=3;SRP=9.52472;SRR=0;TYPE=snp;technology.ILLUMINA=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:10:3,7:3:36:7:225:-17.552,0,-0.349682 NC_002945.4 332128 . C G 158.059 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=8;CIGAR=1X;DP=8;DPB=8;DPRA=0;EPP=3.0103;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQ=60;MQMR=0;NS=1;NUMALT=1;ODDS=15.6955;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=212;QR=0;RO=0;RPL=8;RPP=20.3821;RPPR=0;RPR=0;RUN=1;SAF=4;SAP=3.0103;SAR=4;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:8:0,8:0:0:8:212:-19.3404,-2.40824,0 NC_002945.4 332144 . C T 23.1525 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=3;CIGAR=1X;DP=4;DPB=4;DPRA=0;EPP=9.52472;EPPR=5.18177;GTI=0;LEN=1;MEANALT=1;MQ=60;MQMR=60;NS=1;NUMALT=1;ODDS=5.3259;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=57;QR=12;RO=1;RPL=3;RPP=9.52472;RPPR=5.18177;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=1;SRP=5.18177;SRR=0;TYPE=snp;technology.ILLUMINA=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:4:1,3:1:12:3:57:-4.11919,-0.00412644,0 NC_002945.4 332145 . G T 43.4124 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=4;CIGAR=1X;DP=4;DPB=4;DPRA=0;EPP=11.6962;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQ=60;MQMR=0;NS=1;NUMALT=1;ODDS=9.99598;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=86;QR=0;RO=0;RPL=4;RPP=11.6962;RPPR=0;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:4:0,4:0:0:4:86:-7.95356,-1.20412,0 NC_002945.4 332154 . G C 48.5003 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=3;CIGAR=1X;DP=3;DPB=3;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQ=60;MQMR=0;NS=1;NUMALT=1;ODDS=8.76405;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=81;QR=0;RO=0;RPL=3;RPP=9.52472;RPPR=0;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:3:0,3:0:0:3:81:-7.55923,-0.90309,0