Mercurial > repos > greg > vsnp_get_snps
view test-data/input_zc_vcf.vcf @ 2:7471707d3fb4 draft
Uploaded
| author | greg |
|---|---|
| date | Sat, 14 Nov 2020 09:16:04 +0000 |
| parents | ee4ef1fc23c6 |
| children | da20c7c76d06 |
line wrap: on
line source
##fileformat=VCFv4.2 ##fileDate=20190125 ##source=freeBayes v1.2.0-dirty ##reference=/scratch/analysis_staging/a_script/vcf_test_files_sra_downloaded_2019-01-23/SRR1791698/NC_002945v4.fasta ##contig=<ID=NC_002945.4,length=4349904> ##phasing=none ##commandline="freebayes -E -1 -e 1 -u --strict-vcf -f /scratch/analysis_staging/a_script/vcf_test_files_sra_downloaded_2019-01-23/SRR1791698/NC_002945v4.fasta /scratch/analysis_staging/a_script/vcf_test_files_sra_downloaded_2019-01-23/SRR1791698/SRR1791698-nodup.bam --region NC_002945.4:0-100000 ##filter="QUAL > 20 ##INFO=<ID=NS,Number=1,Type=Integer,Description="Number of samples with data"> ##INFO=<ID=DP,Number=1,Type=Integer,Description="Total read depth at the locus"> ##INFO=<ID=DPB,Number=1,Type=Float,Description="Total read depth per bp at the locus; bases in reads overlapping / bases in haplotype"> ##INFO=<ID=AC,Number=A,Type=Integer,Description="Total number of alternate alleles in called genotypes"> ##INFO=<ID=AN,Number=1,Type=Integer,Description="Total number of alleles in called genotypes"> ##INFO=<ID=AF,Number=A,Type=Float,Description="Estimated allele frequency in the range (0,1]"> ##INFO=<ID=RO,Number=1,Type=Integer,Description="Count of full observations of the reference haplotype."> ##INFO=<ID=AO,Number=A,Type=Integer,Description="Count of full observations of this alternate haplotype."> ##INFO=<ID=PRO,Number=1,Type=Float,Description="Reference allele observation count, with partial observations recorded fractionally"> ##INFO=<ID=PAO,Number=A,Type=Float,Description="Alternate allele observations, with partial observations recorded fractionally"> ##INFO=<ID=QR,Number=1,Type=Integer,Description="Reference allele quality sum in phred"> ##INFO=<ID=QA,Number=A,Type=Integer,Description="Alternate allele quality sum in phred"> ##INFO=<ID=PQR,Number=1,Type=Float,Description="Reference allele quality sum in phred for partial observations"> ##INFO=<ID=PQA,Number=A,Type=Float,Description="Alternate allele quality sum in phred for partial observations"> ##INFO=<ID=SRF,Number=1,Type=Integer,Description="Number of reference observations on the forward strand"> ##INFO=<ID=SRR,Number=1,Type=Integer,Description="Number of reference observations on the reverse strand"> ##INFO=<ID=SAF,Number=A,Type=Integer,Description="Number of alternate observations on the forward strand"> ##INFO=<ID=SAR,Number=A,Type=Integer,Description="Number of alternate observations on the reverse strand"> ##INFO=<ID=SRP,Number=1,Type=Float,Description="Strand balance probability for the reference allele: Phred-scaled upper-bounds estimate of the probability of observing the deviation between SRF and SRR given E(SRF/SRR) ~ 0.5, derived using Hoeffding's inequality"> ##INFO=<ID=SAP,Number=A,Type=Float,Description="Strand balance probability for the alternate allele: Phred-scaled upper-bounds estimate of the probability of observing the deviation between SAF and SAR given E(SAF/SAR) ~ 0.5, derived using Hoeffding's inequality"> ##INFO=<ID=AB,Number=A,Type=Float,Description="Allele balance at heterozygous sites: a number between 0 and 1 representing the ratio of reads showing the reference allele to all reads, considering only reads from individuals called as heterozygous"> ##INFO=<ID=ABP,Number=A,Type=Float,Description="Allele balance probability at heterozygous sites: Phred-scaled upper-bounds estimate of the probability of observing the deviation between ABR and ABA given E(ABR/ABA) ~ 0.5, derived using Hoeffding's inequality"> ##INFO=<ID=RUN,Number=A,Type=Integer,Description="Run length: the number of consecutive repeats of the alternate allele in the reference genome"> ##INFO=<ID=RPP,Number=A,Type=Float,Description="Read Placement Probability: Phred-scaled upper-bounds estimate of the probability of observing the deviation between RPL and RPR given E(RPL/RPR) ~ 0.5, derived using Hoeffding's inequality"> ##INFO=<ID=RPPR,Number=1,Type=Float,Description="Read Placement Probability for reference observations: Phred-scaled upper-bounds estimate of the probability of observing the deviation between RPL and RPR given E(RPL/RPR) ~ 0.5, derived using Hoeffding's inequality"> ##INFO=<ID=RPL,Number=A,Type=Float,Description="Reads Placed Left: number of reads supporting the alternate balanced to the left (5') of the alternate allele"> ##INFO=<ID=RPR,Number=A,Type=Float,Description="Reads Placed Right: number of reads supporting the alternate balanced to the right (3') of the alternate allele"> ##INFO=<ID=EPP,Number=A,Type=Float,Description="End Placement Probability: Phred-scaled upper-bounds estimate of the probability of observing the deviation between EL and ER given E(EL/ER) ~ 0.5, derived using Hoeffding's inequality"> ##INFO=<ID=EPPR,Number=1,Type=Float,Description="End Placement Probability for reference observations: Phred-scaled upper-bounds estimate of the probability of observing the deviation between EL and ER given E(EL/ER) ~ 0.5, derived using Hoeffding's inequality"> ##INFO=<ID=DPRA,Number=A,Type=Float,Description="Alternate allele depth ratio. Ratio between depth in samples with each called alternate allele and those without."> ##INFO=<ID=ODDS,Number=1,Type=Float,Description="The log odds ratio of the best genotype combination to the second-best."> ##INFO=<ID=GTI,Number=1,Type=Integer,Description="Number of genotyping iterations required to reach convergence or bailout."> ##INFO=<ID=TYPE,Number=A,Type=String,Description="The type of allele, either snp, mnp, ins, del, or complex."> ##INFO=<ID=CIGAR,Number=A,Type=String,Description="The extended CIGAR representation of each alternate allele, with the exception that '=' is replaced by 'M' to ease VCF parsing. Note that INDEL alleles do not have the first matched base (which is provided by default, per the spec) referred to by the CIGAR."> ##INFO=<ID=NUMALT,Number=1,Type=Integer,Description="Number of unique non-reference alleles in called genotypes at this position."> ##INFO=<ID=MEANALT,Number=A,Type=Float,Description="Mean number of unique non-reference allele observations per sample with the corresponding alternate alleles."> ##INFO=<ID=LEN,Number=A,Type=Integer,Description="allele length"> ##INFO=<ID=MQM,Number=A,Type=Float,Description="Mean mapping quality of observed alternate alleles"> ##INFO=<ID=MQMR,Number=1,Type=Float,Description="Mean mapping quality of observed reference alleles"> ##INFO=<ID=PAIRED,Number=A,Type=Float,Description="Proportion of observed alternate alleles which are supported by properly paired read fragments"> ##INFO=<ID=PAIREDR,Number=1,Type=Float,Description="Proportion of observed reference alleles which are supported by properly paired read fragments"> ##INFO=<ID=MIN_DP,Number=1,Type=Integer,Description="Minimum depth in gVCF output block."> ##INFO=<ID=END,Number=1,Type=Integer,Description="Last position (inclusive) in gVCF output record."> ##INFO=<ID=technology.ILLUMINA,Number=A,Type=Float,Description="Fraction of observations supporting the alternate observed in reads from ILLUMINA"> ##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype"> ##FORMAT=<ID=GQ,Number=1,Type=Integer,Description="Genotype Quality, the Phred-scaled marginal (or unconditional) probability of the called genotype"> ##FORMAT=<ID=GL,Number=G,Type=Float,Description="Genotype Likelihood, log10-scaled likelihoods of the data given the called genotype for each possible genotype generated from the reference and alternate alleles given the sample ploidy"> ##FORMAT=<ID=DP,Number=1,Type=Integer,Description="Read Depth"> ##FORMAT=<ID=AD,Number=R,Type=Integer,Description="Number of observation for each allele"> ##FORMAT=<ID=RO,Number=1,Type=Integer,Description="Reference allele observation count"> ##FORMAT=<ID=QR,Number=1,Type=Integer,Description="Sum of quality of the reference observations"> ##FORMAT=<ID=AO,Number=A,Type=Integer,Description="Alternate allele observation count"> ##FORMAT=<ID=QA,Number=A,Type=Integer,Description="Sum of quality of the alternate observations"> ##FORMAT=<ID=MIN_DP,Number=1,Type=Integer,Description="Minimum depth in gVCF output block."> #CHROM POS ID REF ALT QUAL FILTER INFO FORMAT SRR1791698 NC_002945.4 1057 . A G 7624.7 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=262;CIGAR=1X;DP=265;DPB=265;DPRA=0;EPP=4.20378;EPPR=5.18177;GTI=0;LEN=1;MEANALT=2;MQ=60;MQMR=60;NS=1;NUMALT=1;ODDS=363.221;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=8526;QR=12;RO=1;RPL=140;RPP=5.69563;RPPR=5.18177;RPR=122;RUN=1;SAF=139;SAP=5.13204;SAR=123;SRF=0;SRP=5.18177;SRR=1;TYPE=snp;technology.ILLUMINA=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:265:1,262:1:12:262:8526:-766.088,-78.0909,0 NC_002945.4 4480 . T C 4142.4 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=144;CIGAR=1X;DP=145;DPB=145;DPRA=0;EPP=3.07062;EPPR=0;GTI=0;LEN=1;MEANALT=2;MQ=60;MQMR=0;NS=1;NUMALT=1;ODDS=204.232;PAIRED=0.993056;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=4647;QR=0;RO=0;RPL=79;RPP=5.96592;RPPR=0;RPR=65;RUN=1;SAF=72;SAP=3.0103;SAR=72;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:145:0,144:0:0:144:4647:-418.074,-43.3483,0 NC_002945.4 8741 . T C 5252.19 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=184;CIGAR=1X;DP=186;DPB=186;DPRA=0;EPP=16.6528;EPPR=0;GTI=0;LEN=1;MEANALT=2;MQ=60;MQMR=0;NS=1;NUMALT=1;ODDS=259.683;PAIRED=0.98913;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=5901;QR=0;RO=0;RPL=81;RPP=8.72222;RPPR=0;RPR=103;RUN=1;SAF=98;SAP=4.70971;SAR=86;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:186:0,184:0:0:184:5901:-531.016,-55.3895,0 NC_002945.4 29061 . C T 4714.63 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=163;CIGAR=1X;DP=164;DPB=164;DPRA=0;EPP=3.1302;EPPR=0;GTI=0;LEN=1;MEANALT=2;MQ=60;MQMR=0;NS=1;NUMALT=1;ODDS=230.571;PAIRED=0.969325;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=5311;QR=0;RO=0;RPL=59;RPP=29.9872;RPPR=0;RPR=104;RUN=1;SAF=83;SAP=3.1302;SAR=80;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:164:0,163:0:0:163:5311:-477.817,-49.0679,0 NC_002945.4 29471 . N . . . . GT ./. NC_002945.4 29472 . N . . . . GT ./. NC_002945.4 29473 . N . . . . GT ./. NC_002945.4 29474 . N . . . . GT ./. NC_002945.4 29475 . N . . . . GT ./. NC_002945.4 29476 . N . . . . GT ./. NC_002945.4 29477 . N . . . . GT ./. NC_002945.4 29478 . N . . . . GT ./. NC_002945.4 29479 . N . . . . GT ./. NC_002945.4 29480 . N . . . . GT ./. NC_002945.4 29481 . N . . . . GT ./. NC_002945.4 29482 . N . . . . GT ./. NC_002945.4 29483 . N . . . . GT ./. NC_002945.4 29484 . N . . . . GT ./. NC_002945.4 29485 . N . . . . GT ./. NC_002945.4 29486 . N . . . . GT ./. NC_002945.4 29487 . N . . . . GT ./. NC_002945.4 29488 . N . . . . GT ./. NC_002945.4 29489 . N . . . . GT ./. NC_002945.4 29490 . N . . . . GT ./. NC_002945.4 29491 . N . . . . GT ./. NC_002945.4 29492 . N . . . . GT ./. NC_002945.4 29493 . N . . . . GT ./. NC_002945.4 29494 . N . . . . GT ./. NC_002945.4 29495 . N . . . . GT ./. NC_002945.4 29496 . N . . . . GT ./. NC_002945.4 29497 . N . . . . GT ./. NC_002945.4 29498 . N . . . . GT ./. NC_002945.4 29499 . N . . . . GT ./. NC_002945.4 29500 . N . . . . GT ./. NC_002945.4 29501 . N . . . . GT ./. NC_002945.4 29502 . N . . . . GT ./. NC_002945.4 29503 . N . . . . GT ./. NC_002945.4 29504 . N . . . . GT ./. NC_002945.4 29505 . N . . . . GT ./. NC_002945.4 29506 . N . . . . GT ./. NC_002945.4 29507 . N . . . . GT ./. NC_002945.4 29508 . N . . . . GT ./. NC_002945.4 29509 . N . . . . GT ./. NC_002945.4 29510 . N . . . . GT ./. NC_002945.4 29511 . N . . . . GT ./. NC_002945.4 29512 . N . . . . GT ./. NC_002945.4 29513 . N . . . . GT ./. NC_002945.4 29514 . N . . . . GT ./. NC_002945.4 29515 . N . . . . GT ./. NC_002945.4 29516 . N . . . . GT ./. NC_002945.4 29517 . N . . . . GT ./. NC_002945.4 29518 . N . . . . GT ./. NC_002945.4 29519 . N . . . . GT ./. NC_002945.4 29520 . N . . . . GT ./. NC_002945.4 29521 . N . . . . GT ./. NC_002945.4 29522 . N . . . . GT ./. NC_002945.4 29523 . N . . . . GT ./. NC_002945.4 29524 . N . . . . GT ./. NC_002945.4 29525 . N . . . . GT ./. NC_002945.4 29526 . N . . . . GT ./. NC_002945.4 29527 . N . . . . GT ./. NC_002945.4 29528 . N . . . . GT ./. NC_002945.4 29529 . N . . . . GT ./. NC_002945.4 29530 . N . . . . GT ./. NC_002945.4 29531 . N . . . . GT ./. NC_002945.4 29532 . N . . . . GT ./. NC_002945.4 29533 . N . . . . GT ./. NC_002945.4 29534 . N . . . . GT ./. NC_002945.4 29535 . N . . . . GT ./. NC_002945.4 29536 . N . . . . GT ./. NC_002945.4 29537 . N . . . . GT ./. NC_002945.4 29538 . N . . . . GT ./. NC_002945.4 29539 . N . . . . GT ./. NC_002945.4 29540 . N . . . . GT ./. NC_002945.4 29541 . N . . . . GT ./. NC_002945.4 29542 . N . . . . GT ./. NC_002945.4 29543 . N . . . . GT ./. NC_002945.4 29544 . N . . . . GT ./. NC_002945.4 29545 . N . . . . GT ./. NC_002945.4 29546 . N . . . . GT ./. NC_002945.4 29547 . N . . . . GT ./. NC_002945.4 29548 . N . . . . GT ./. NC_002945.4 29549 . N . . . . GT ./. NC_002945.4 29550 . N . . . . GT ./. NC_002945.4 29551 . N . . . . GT ./. NC_002945.4 29552 . N . . . . GT ./. NC_002945.4 29553 . N . . . . GT ./. NC_002945.4 29554 . N . . . . GT ./. NC_002945.4 29555 . N . . . . GT ./. NC_002945.4 29556 . N . . . . GT ./. NC_002945.4 29557 . N . . . . GT ./. NC_002945.4 29558 . N . . . . GT ./. NC_002945.4 29559 . N . . . . GT ./. NC_002945.4 29560 . N . . . . GT ./. NC_002945.4 29561 . N . . . . GT ./. NC_002945.4 29562 . N . . . . GT ./. NC_002945.4 29563 . N . . . . GT ./. NC_002945.4 29564 . N . . . . GT ./. NC_002945.4 29565 . N . . . . GT ./. NC_002945.4 29566 . N . . . . GT ./. NC_002945.4 29567 . N . . . . GT ./. NC_002945.4 29568 . N . . . . GT ./. NC_002945.4 29569 . N . . . . GT ./. NC_002945.4 29570 . N . . . . GT ./. NC_002945.4 29571 . N . . . . GT ./. NC_002945.4 29572 . N . . . . GT ./. NC_002945.4 29573 . N . . . . GT ./. NC_002945.4 29574 . N . . . . GT ./. NC_002945.4 29575 . N . . . . GT ./. NC_002945.4 29576 . N . . . . GT ./. NC_002945.4 29577 . N . . . . GT ./. NC_002945.4 29578 . N . . . . GT ./. NC_002945.4 29579 . N . . . . GT ./. NC_002945.4 29580 . N . . . . GT ./. NC_002945.4 29581 . N . . . . GT ./. NC_002945.4 29582 . N . . . . GT ./. NC_002945.4 29583 . N . . . . GT ./. NC_002945.4 29584 . N . . . . GT ./. NC_002945.4 29585 . N . . . . GT ./. NC_002945.4 29586 . N . . . . GT ./. NC_002945.4 29587 . N . . . . GT ./. NC_002945.4 29588 . N . . . . GT ./. NC_002945.4 29589 . N . . . . GT ./. NC_002945.4 29590 . N . . . . GT ./. NC_002945.4 29591 . N . . . . GT ./. NC_002945.4 29592 . N . . . . GT ./. NC_002945.4 29593 . N . . . . GT ./. NC_002945.4 29594 . N . . . . GT ./. NC_002945.4 29595 . N . . . . GT ./. NC_002945.4 29596 . N . . . . GT ./. NC_002945.4 29597 . N . . . . GT ./. NC_002945.4 29598 . N . . . . GT ./. NC_002945.4 29599 . N . . . . GT ./. NC_002945.4 29600 . N . . . . GT ./. NC_002945.4 29601 . N . . . . GT ./. NC_002945.4 29602 . N . . . . GT ./. NC_002945.4 29603 . N . . . . GT ./. NC_002945.4 29604 . N . . . . GT ./. NC_002945.4 29605 . N . . . . GT ./. NC_002945.4 29606 . N . . . . GT ./. NC_002945.4 29607 . N . . . . GT ./. NC_002945.4 29608 . N . . . . GT ./. NC_002945.4 29609 . N . . . . GT ./. NC_002945.4 29610 . N . . . . GT ./. NC_002945.4 29611 . N . . . . GT ./. NC_002945.4 29612 . N . . . . GT ./. NC_002945.4 29613 . N . . . . GT ./. NC_002945.4 29614 . N . . . . GT ./. NC_002945.4 29615 . N . . . . GT ./. NC_002945.4 29616 . N . . . . GT ./. NC_002945.4 29617 . N . . . . GT ./. NC_002945.4 29618 . N . . . . GT ./. NC_002945.4 29619 . N . . . . GT ./. NC_002945.4 29620 . N . . . . GT ./. NC_002945.4 29621 . N . . . . GT ./. NC_002945.4 29622 . N . . . . GT ./. NC_002945.4 29623 . N . . . . GT ./. NC_002945.4 29624 . N . . . . GT ./. NC_002945.4 29625 . N . . . . GT ./. NC_002945.4 29626 . N . . . . GT ./. NC_002945.4 29627 . N . . . . GT ./. NC_002945.4 29628 . N . . . . GT ./. NC_002945.4 29629 . N . . . . GT ./. NC_002945.4 29630 . N . . . . GT ./. NC_002945.4 29631 . N . . . . GT ./. NC_002945.4 29632 . N . . . . GT ./. NC_002945.4 29633 . N . . . . GT ./. NC_002945.4 29634 . N . . . . GT ./. NC_002945.4 29635 . N . . . . GT ./. NC_002945.4 29636 . N . . . . GT ./. NC_002945.4 29637 . N . . . . GT ./. NC_002945.4 29638 . N . . . . GT ./. NC_002945.4 29639 . N . . . . GT ./. NC_002945.4 29640 . N . . . . GT ./. NC_002945.4 29641 . N . . . . GT ./. NC_002945.4 29642 . N . . . . GT ./. NC_002945.4 29643 . N . . . . GT ./. NC_002945.4 29644 . N . . . . GT ./. NC_002945.4 29645 . N . . . . GT ./. NC_002945.4 29646 . N . . . . GT ./. NC_002945.4 29647 . N . . . . GT ./. NC_002945.4 29648 . N . . . . GT ./. NC_002945.4 29649 . N . . . . GT ./. NC_002945.4 29650 . N . . . . GT ./. NC_002945.4 29651 . N . . . . GT ./. NC_002945.4 29652 . N . . . . GT ./. NC_002945.4 29653 . N . . . . GT ./. NC_002945.4 29654 . N . . . . GT ./. NC_002945.4 29655 . N . . . . GT ./. NC_002945.4 29656 . N . . . . GT ./. NC_002945.4 29657 . N . . . . GT ./. NC_002945.4 29658 . N . . . . GT ./. NC_002945.4 29659 . N . . . . GT ./. NC_002945.4 29660 . N . . . . GT ./. NC_002945.4 29661 . N . . . . GT ./. NC_002945.4 29662 . N . . . . GT ./. NC_002945.4 29663 . N . . . . GT ./. NC_002945.4 29664 . N . . . . GT ./. NC_002945.4 29665 . N . . . . GT ./. NC_002945.4 29666 . N . . . . GT ./. NC_002945.4 29667 . N . . . . GT ./. NC_002945.4 29668 . N . . . . GT ./. NC_002945.4 29669 . N . . . . GT ./. NC_002945.4 29670 . N . . . . GT ./. NC_002945.4 29671 . N . . . . GT ./. NC_002945.4 29672 . N . . . . GT ./. NC_002945.4 29673 . N . . . . GT ./. NC_002945.4 29674 . N . . . . GT ./. NC_002945.4 29675 . N . . . . GT ./. NC_002945.4 29676 . N . . . . GT ./. NC_002945.4 29677 . N . . . . GT ./. NC_002945.4 29678 . N . . . . GT ./. NC_002945.4 29679 . N . . . . GT ./. NC_002945.4 29680 . N . . . . GT ./. NC_002945.4 29681 . N . . . . GT ./. NC_002945.4 29682 . N . . . . GT ./. NC_002945.4 29683 . N . . . . GT ./. NC_002945.4 29684 . N . . . . GT ./. NC_002945.4 29685 . N . . . . GT ./. NC_002945.4 29686 . N . . . . GT ./. NC_002945.4 29687 . N . . . . GT ./. NC_002945.4 29688 . N . . . . GT ./. NC_002945.4 29689 . N . . . . GT ./. NC_002945.4 29690 . N . . . . GT ./. NC_002945.4 29691 . N . . . . GT ./. NC_002945.4 29692 . N . . . . GT ./. NC_002945.4 29693 . N . . . . GT ./. NC_002945.4 29694 . N . . . . GT ./. NC_002945.4 29695 . N . . . . GT ./. NC_002945.4 29696 . N . . . . GT ./. NC_002945.4 29697 . N . . . . GT ./. NC_002945.4 29698 . N . . . . GT ./. NC_002945.4 29699 . N . . . . GT ./. NC_002945.4 29700 . N . . . . GT ./. NC_002945.4 29701 . N . . . . GT ./. NC_002945.4 29702 . N . . . . GT ./. NC_002945.4 29703 . N . . . . GT ./. NC_002945.4 29704 . N . . . . GT ./. NC_002945.4 29705 . N . . . . GT ./. NC_002945.4 29706 . N . . . . GT ./. NC_002945.4 29707 . N . . . . GT ./. NC_002945.4 29708 . N . . . . GT ./. NC_002945.4 29709 . N . . . . GT ./. NC_002945.4 29710 . N . . . . GT ./. NC_002945.4 29711 . N . . . . GT ./. NC_002945.4 29712 . N . . . . GT ./. NC_002945.4 29713 . N . . . . GT ./. NC_002945.4 29714 . N . . . . GT ./. NC_002945.4 29715 . N . . . . GT ./. NC_002945.4 29716 . N . . . . GT ./. NC_002945.4 29717 . N . . . . GT ./. NC_002945.4 29718 . N . . . . GT ./. NC_002945.4 29719 . N . . . . GT ./. NC_002945.4 29720 . N . . . . GT ./. NC_002945.4 29721 . N . . . . GT ./. NC_002945.4 29722 . N . . . . GT ./. NC_002945.4 29723 . N . . . . GT ./. NC_002945.4 29724 . N . . . . GT ./. NC_002945.4 29725 . N . . . . GT ./. NC_002945.4 29726 . N . . . . GT ./. NC_002945.4 29727 . N . . . . GT ./. NC_002945.4 29728 . N . . . . GT ./. NC_002945.4 29729 . N . . . . GT ./. NC_002945.4 29730 . N . . . . GT ./. NC_002945.4 29731 . N . . . . GT ./. NC_002945.4 29732 . N . . . . GT ./. NC_002945.4 29733 . N . . . . GT ./. NC_002945.4 29734 . N . . . . GT ./. NC_002945.4 29735 . N . . . . GT ./. NC_002945.4 29736 . N . . . . GT ./. NC_002945.4 29737 . N . . . . GT ./. NC_002945.4 29738 . N . . . . GT ./. NC_002945.4 29739 . N . . . . GT ./. NC_002945.4 29740 . N . . . . GT ./. NC_002945.4 29741 . N . . . . GT ./. NC_002945.4 29742 . N . . . . GT ./. NC_002945.4 29743 . N . . . . GT ./. NC_002945.4 29744 . N . . . . GT ./. NC_002945.4 29745 . N . . . . GT ./. NC_002945.4 29746 . N . . . . GT ./. NC_002945.4 29747 . N . . . . GT ./. NC_002945.4 29748 . N . . . . GT ./. NC_002945.4 29749 . N . . . . GT ./. NC_002945.4 29750 . N . . . . GT ./. NC_002945.4 29751 . N . . . . GT ./. NC_002945.4 29752 . N . . . . GT ./. NC_002945.4 29753 . N . . . . GT ./. NC_002945.4 29754 . N . . . . GT ./. NC_002945.4 29755 . N . . . . GT ./. NC_002945.4 29756 . N . . . . GT ./. NC_002945.4 29757 . N . . . . GT ./. NC_002945.4 29758 . N . . . . GT ./. NC_002945.4 29759 . N . . . . GT ./. NC_002945.4 29760 . N . . . . GT ./. NC_002945.4 29761 . N . . . . GT ./. NC_002945.4 29762 . N . . . . GT ./. NC_002945.4 29763 . N . . . . GT ./. NC_002945.4 29764 . N . . . . GT ./. NC_002945.4 29765 . N . . . . GT ./. NC_002945.4 29766 . N . . . . GT ./. NC_002945.4 29767 . N . . . . GT ./. NC_002945.4 29768 . N . . . . GT ./. NC_002945.4 29769 . N . . . . GT ./. NC_002945.4 29770 . N . . . . GT ./. NC_002945.4 29771 . N . . . . GT ./. NC_002945.4 29772 . N . . . . GT ./. NC_002945.4 29773 . N . . . . GT ./. NC_002945.4 29774 . N . . . . GT ./. NC_002945.4 29775 . N . . . . GT ./. NC_002945.4 29776 . N . . . . GT ./. NC_002945.4 29777 . N . . . . GT ./. NC_002945.4 29778 . N . . . . GT ./. NC_002945.4 29779 . N . . . . GT ./. NC_002945.4 29780 . N . . . . GT ./. NC_002945.4 29781 . N . . . . GT ./. NC_002945.4 29782 . N . . . . GT ./. NC_002945.4 29783 . N . . . . GT ./. NC_002945.4 29784 . N . . . . GT ./. NC_002945.4 29785 . N . . . . GT ./. NC_002945.4 29786 . N . . . . GT ./. NC_002945.4 29787 . N . . . . GT ./. NC_002945.4 29788 . N . . . . GT ./. NC_002945.4 29789 . N . . . . GT ./. NC_002945.4 29790 . N . . . . GT ./. NC_002945.4 29791 . N . . . . GT ./. NC_002945.4 29792 . N . . . . GT ./. NC_002945.4 29793 . N . . . . GT ./. NC_002945.4 29794 . N . . . . GT ./. NC_002945.4 29795 . N . . . . GT ./. NC_002945.4 29796 . N . . . . GT ./. NC_002945.4 29797 . N . . . . GT ./. NC_002945.4 29798 . N . . . . GT ./. NC_002945.4 29799 . N . . . . GT ./. NC_002945.4 29800 . N . . . . GT ./. NC_002945.4 29801 . N . . . . GT ./. NC_002945.4 29802 . N . . . . GT ./. NC_002945.4 29803 . N . . . . GT ./. NC_002945.4 29804 . N . . . . GT ./. NC_002945.4 29805 . N . . . . GT ./. NC_002945.4 29806 . N . . . . GT ./. NC_002945.4 29807 . N . . . . GT ./. NC_002945.4 29808 . N . . . . GT ./. NC_002945.4 29809 . N . . . . GT ./. NC_002945.4 29810 . N . . . . GT ./. NC_002945.4 29811 . N . . . . GT ./. NC_002945.4 29812 . N . . . . GT ./. NC_002945.4 29813 . N . . . . GT ./. NC_002945.4 29814 . N . . . . GT ./. NC_002945.4 29815 . N . . . . GT ./. NC_002945.4 29816 . N . . . . GT ./. NC_002945.4 29817 . N . . . . GT ./. NC_002945.4 29818 . N . . . . GT ./. NC_002945.4 29819 . N . . . . GT ./. NC_002945.4 29820 . N . . . . GT ./. NC_002945.4 29821 . N . . . . GT ./. NC_002945.4 29822 . N . . . . GT ./. NC_002945.4 29823 . N . . . . GT ./. NC_002945.4 29824 . N . . . . GT ./. NC_002945.4 29825 . N . . . . GT ./. NC_002945.4 29826 . N . . . . GT ./. NC_002945.4 29827 . N . . . . GT ./. NC_002945.4 29828 . N . . . . GT ./. NC_002945.4 29829 . N . . . . GT ./. NC_002945.4 29830 . N . . . . GT ./. NC_002945.4 29831 . N . . . . GT ./. NC_002945.4 29832 . N . . . . GT ./. NC_002945.4 29833 . N . . . . GT ./. NC_002945.4 29834 . N . . . . GT ./. NC_002945.4 29835 . N . . . . GT ./. NC_002945.4 29836 . N . . . . GT ./. NC_002945.4 29837 . N . . . . GT ./. NC_002945.4 29838 . N . . . . GT ./. NC_002945.4 29839 . N . . . . GT ./. NC_002945.4 29840 . N . . . . GT ./. NC_002945.4 29841 . N . . . . GT ./. NC_002945.4 29842 . N . . . . GT ./. NC_002945.4 29843 . N . . . . GT ./. NC_002945.4 29844 . N . . . . GT ./. NC_002945.4 29845 . N . . . . GT ./. NC_002945.4 29846 . N . . . . GT ./. NC_002945.4 29847 . N . . . . GT ./. NC_002945.4 29848 . N . . . . GT ./. NC_002945.4 29849 . N . . . . GT ./. NC_002945.4 29850 . N . . . . GT ./. NC_002945.4 29851 . N . . . . GT ./. NC_002945.4 29852 . N . . . . GT ./. NC_002945.4 29853 . N . . . . GT ./. NC_002945.4 29854 . N . . . . GT ./. NC_002945.4 29855 . N . . . . GT ./. NC_002945.4 29856 . N . . . . GT ./. NC_002945.4 29857 . N . . . . GT ./. NC_002945.4 29858 . N . . . . GT ./. NC_002945.4 29859 . N . . . . GT ./. NC_002945.4 29860 . N . . . . GT ./. NC_002945.4 29861 . N . . . . GT ./. NC_002945.4 29862 . N . . . . GT ./. NC_002945.4 29863 . N . . . . GT ./. NC_002945.4 29864 . N . . . . GT ./. NC_002945.4 29865 . N . . . . GT ./. NC_002945.4 29866 . N . . . . GT ./. NC_002945.4 29867 . N . . . . GT ./. NC_002945.4 29868 . N . . . . GT ./. NC_002945.4 29869 . N . . . . GT ./. NC_002945.4 29870 . N . . . . GT ./. NC_002945.4 29871 . N . . . . GT ./. NC_002945.4 29872 . N . . . . GT ./. NC_002945.4 29873 . N . . . . GT ./. NC_002945.4 29874 . N . . . . GT ./. NC_002945.4 29875 . N . . . . GT ./. NC_002945.4 29876 . N . . . . GT ./. NC_002945.4 29877 . N . . . . GT ./. NC_002945.4 29878 . N . . . . GT ./. NC_002945.4 29879 . N . . . . GT ./. NC_002945.4 29880 . N . . . . GT ./. NC_002945.4 29881 . N . . . . GT ./. NC_002945.4 29882 . N . . . . GT ./. NC_002945.4 29883 . N . . . . GT ./. NC_002945.4 29884 . N . . . . GT ./. NC_002945.4 29885 . N . . . . GT ./. NC_002945.4 29886 . N . . . . GT ./. NC_002945.4 29887 . N . . . . GT ./. NC_002945.4 29888 . N . . . . GT ./. NC_002945.4 29889 . N . . . . GT ./. NC_002945.4 29890 . N . . . . GT ./. NC_002945.4 29891 . N . . . . GT ./. NC_002945.4 29892 . N . . . . GT ./. NC_002945.4 29893 . N . . . . GT ./. NC_002945.4 29894 . N . . . . GT ./. NC_002945.4 29895 . N . . . . GT ./. NC_002945.4 29896 . N . . . . GT ./. NC_002945.4 29897 . N . . . . GT ./. NC_002945.4 29898 . N . . . . GT ./. NC_002945.4 29899 . N . . . . GT ./. NC_002945.4 29900 . N . . . . GT ./. NC_002945.4 29901 . N . . . . GT ./. NC_002945.4 29902 . N . . . . GT ./. NC_002945.4 29903 . N . . . . GT ./. NC_002945.4 29904 . N . . . . GT ./. NC_002945.4 29905 . N . . . . GT ./. NC_002945.4 29906 . N . . . . GT ./. NC_002945.4 29907 . N . . . . GT ./. NC_002945.4 29908 . N . . . . GT ./. NC_002945.4 29909 . N . . . . GT ./. NC_002945.4 29910 . N . . . . GT ./. NC_002945.4 29911 . N . . . . GT ./. NC_002945.4 29912 . N . . . . GT ./. NC_002945.4 29913 . N . . . . GT ./. NC_002945.4 29914 . N . . . . GT ./. NC_002945.4 29915 . N . . . . GT ./. NC_002945.4 29916 . N . . . . GT ./. NC_002945.4 29917 . N . . . . GT ./. NC_002945.4 29918 . N . . . . GT ./. NC_002945.4 29919 . N . . . . GT ./. NC_002945.4 29920 . N . . . . GT ./. NC_002945.4 29921 . N . . . . GT ./. NC_002945.4 29922 . N . . . . GT ./. NC_002945.4 29923 . N . . . . GT ./. NC_002945.4 29924 . N . . . . GT ./. NC_002945.4 29925 . N . . . . GT ./. NC_002945.4 29926 . N . . . . GT ./. NC_002945.4 29927 . N . . . . GT ./. NC_002945.4 29928 . N . . . . GT ./. NC_002945.4 29929 . N . . . . GT ./. NC_002945.4 29930 . N . . . . GT ./. NC_002945.4 29931 . N . . . . GT ./. NC_002945.4 29932 . N . . . . GT ./. NC_002945.4 29933 . N . . . . GT ./. NC_002945.4 29934 . N . . . . GT ./. NC_002945.4 29935 . N . . . . GT ./. NC_002945.4 29936 . N . . . . GT ./. NC_002945.4 29937 . N . . . . GT ./. NC_002945.4 29938 . N . . . . GT ./. NC_002945.4 29939 . N . . . . GT ./. NC_002945.4 29940 . N . . . . GT ./. NC_002945.4 29941 . N . . . . GT ./. NC_002945.4 29942 . N . . . . GT ./. NC_002945.4 29943 . N . . . . GT ./. NC_002945.4 29944 . N . . . . GT ./. NC_002945.4 29945 . N . . . . GT ./. NC_002945.4 29946 . N . . . . GT ./. NC_002945.4 29947 . N . . . . GT ./. NC_002945.4 29948 . N . . . . GT ./. NC_002945.4 29949 . N . . . . GT ./. NC_002945.4 29950 . N . . . . GT ./. NC_002945.4 29951 . N . . . . GT ./. NC_002945.4 29952 . N . . . . GT ./. NC_002945.4 29953 . N . . . . GT ./. NC_002945.4 29954 . N . . . . GT ./. NC_002945.4 29955 . N . . . . GT ./. NC_002945.4 29956 . N . . . . GT ./. NC_002945.4 29957 . N . . . . GT ./. NC_002945.4 29958 . N . . . . GT ./. NC_002945.4 29959 . N . . . . GT ./. NC_002945.4 29960 . N . . . . GT ./. NC_002945.4 29961 . N . . . . GT ./. NC_002945.4 29962 . N . . . . GT ./. NC_002945.4 29963 . N . . . . GT ./. NC_002945.4 29964 . N . . . . GT ./. NC_002945.4 29965 . N . . . . GT ./. NC_002945.4 29966 . N . . . . GT ./. NC_002945.4 29967 . N . . . . GT ./. NC_002945.4 29968 . N . . . . GT ./. NC_002945.4 29969 . N . . . . GT ./. NC_002945.4 29970 . N . . . . GT ./. NC_002945.4 29971 . N . . . . GT ./. NC_002945.4 29972 . N . . . . GT ./. NC_002945.4 29973 . N . . . . GT ./. NC_002945.4 29974 . N . . . . GT ./. NC_002945.4 29975 . N . . . . GT ./. NC_002945.4 29976 . N . . . . GT ./. NC_002945.4 29977 . N . . . . GT ./. NC_002945.4 29978 . N . . . . GT ./. NC_002945.4 29979 . N . . . . GT ./. NC_002945.4 29980 . N . . . . GT ./. NC_002945.4 29981 . N . . . . GT ./. NC_002945.4 29982 . N . . . . GT ./. NC_002945.4 29983 . N . . . . GT ./. NC_002945.4 29984 . N . . . . GT ./. NC_002945.4 29985 . N . . . . GT ./. NC_002945.4 29986 . N . . . . GT ./. NC_002945.4 29987 . N . . . . GT ./. NC_002945.4 29988 . N . . . . GT ./. NC_002945.4 29989 . N . . . . GT ./. NC_002945.4 29990 . N . . . . GT ./. NC_002945.4 29991 . N . . . . GT ./. NC_002945.4 29992 . N . . . . GT ./. NC_002945.4 29993 . N . . . . GT ./. NC_002945.4 29994 . N . . . . GT ./. NC_002945.4 29995 . N . . . . GT ./. NC_002945.4 29996 . N . . . . GT ./. NC_002945.4 29997 . N . . . . GT ./. NC_002945.4 29998 . N . . . . GT ./. NC_002945.4 29999 . N . . . . GT ./. NC_002945.4 30000 . N . . . . GT ./. NC_002945.4 30001 . N . . . . GT ./. NC_002945.4 30002 . N . . . . GT ./. NC_002945.4 30003 . N . . . . GT ./. NC_002945.4 30004 . N . . . . GT ./. NC_002945.4 30005 . N . . . . GT ./. NC_002945.4 30006 . N . . . . GT ./. NC_002945.4 30007 . N . . . . GT ./. NC_002945.4 30008 . N . . . . GT ./. NC_002945.4 30009 . N . . . . GT ./. NC_002945.4 30010 . N . . . . GT ./. NC_002945.4 30011 . N . . . . GT ./. NC_002945.4 30012 . N . . . . GT ./. NC_002945.4 30013 . N . . . . GT ./. NC_002945.4 30014 . N . . . . GT ./. NC_002945.4 30015 . N . . . . GT ./. NC_002945.4 30016 . N . . . . GT ./. NC_002945.4 30017 . N . . . . GT ./. NC_002945.4 30018 . N . . . . GT ./. NC_002945.4 30019 . N . . . . GT ./. NC_002945.4 30020 . N . . . . GT ./. NC_002945.4 30021 . N . . . . GT ./. NC_002945.4 30022 . N . . . . GT ./. NC_002945.4 30023 . N . . . . GT ./. NC_002945.4 30024 . N . . . . GT ./. NC_002945.4 30025 . N . . . . GT ./. NC_002945.4 30026 . N . . . . GT ./. NC_002945.4 30027 . N . . . . GT ./. NC_002945.4 30028 . N . . . . GT ./. NC_002945.4 30029 . N . . . . GT ./. NC_002945.4 30030 . N . . . . GT ./. NC_002945.4 30031 . N . . . . GT ./. NC_002945.4 30032 . N . . . . GT ./. NC_002945.4 30033 . N . . . . GT ./. NC_002945.4 30034 . N . . . . GT ./. NC_002945.4 30035 . N . . . . GT ./. NC_002945.4 30036 . N . . . . GT ./. NC_002945.4 30037 . N . . . . GT ./. NC_002945.4 30038 . N . . . . GT ./. NC_002945.4 30039 . N . . . . GT ./. NC_002945.4 30040 . N . . . . GT ./. NC_002945.4 30041 . N . . . . GT ./. NC_002945.4 30042 . N . . . . GT ./. NC_002945.4 30043 . N . . . . GT ./. NC_002945.4 30044 . N . . . . GT ./. NC_002945.4 30045 . N . . . . GT ./. NC_002945.4 30046 . N . . . . GT ./. NC_002945.4 30047 . N . . . . GT ./. NC_002945.4 30048 . N . . . . GT ./. NC_002945.4 30049 . N . . . . GT ./. NC_002945.4 30050 . N . . . . GT ./. NC_002945.4 30051 . N . . . . GT ./. NC_002945.4 30052 . N . . . . GT ./. NC_002945.4 30053 . N . . . . GT ./. NC_002945.4 30054 . N . . . . GT ./. NC_002945.4 30055 . N . . . . GT ./. NC_002945.4 30056 . N . . . . GT ./. NC_002945.4 30057 . N . . . . GT ./. NC_002945.4 30058 . N . . . . GT ./. NC_002945.4 30059 . N . . . . GT ./. NC_002945.4 30060 . N . . . . GT ./. NC_002945.4 30061 . N . . . . GT ./. NC_002945.4 30062 . N . . . . GT ./. NC_002945.4 30063 . N . . . . GT ./. NC_002945.4 30064 . N . . . . GT ./. NC_002945.4 30065 . N . . . . GT ./. NC_002945.4 30066 . N . . . . GT ./. NC_002945.4 30067 . N . . . . GT ./. NC_002945.4 30068 . N . . . . GT ./. NC_002945.4 30069 . N . . . . GT ./. NC_002945.4 30070 . N . . . . GT ./. NC_002945.4 30071 . N . . . . GT ./. NC_002945.4 30072 . N . . . . GT ./. NC_002945.4 30073 . N . . . . GT ./. NC_002945.4 30074 . N . . . . GT ./. NC_002945.4 30075 . N . . . . GT ./. NC_002945.4 30076 . N . . . . GT ./. NC_002945.4 30077 . N . . . . GT ./. NC_002945.4 30078 . N . . . . GT ./. NC_002945.4 30079 . N . . . . GT ./. NC_002945.4 30080 . N . . . . GT ./. NC_002945.4 30081 . N . . . . GT ./. NC_002945.4 30082 . N . . . . GT ./. NC_002945.4 33788 . A G 2948.3 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=104;CIGAR=1X;DP=105;DPB=105;DPRA=0;EPP=11.3621;EPPR=5.18177;GTI=0;LEN=1;MEANALT=1;MQ=60;MQMR=60;NS=1;NUMALT=1;ODDS=144.138;PAIRED=0.990385;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3576;QR=15;RO=1;RPL=47;RPP=5.09825;RPPR=5.18177;RPR=57;RUN=1;SAF=99;SAP=187.502;SAR=5;SRF=0;SRP=5.18177;SRR=1;TYPE=snp;technology.ILLUMINA=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:105:1,104:1:15:104:3576:-320.525,-30.1082,0 NC_002945.4 41228 . A C 5830.59 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=198;CIGAR=1X;DP=205;DPB=205;DPRA=0;EPP=15.6882;EPPR=18.2106;GTI=0;LEN=1;MEANALT=1;MQ=60;MQMR=60;NS=1;NUMALT=1;ODDS=254.088;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=6570;QR=98;RO=7;RPL=91;RPP=5.81786;RPPR=18.2106;RPR=107;RUN=1;SAF=107;SAP=5.81786;SAR=91;SRF=0;SRP=18.2106;SRR=7;TYPE=snp;technology.ILLUMINA=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:205:7,198:7:98:198:6570:-582.305,-52.7512,0 NC_002945.4 41437 . T C 6677.87 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=220;CIGAR=1X;DP=221;DPB=221;DPRA=0;EPP=3.642;EPPR=0;GTI=0;LEN=1;MEANALT=2;MQ=60;MQMR=0;NS=1;NUMALT=1;ODDS=309.59;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=7473;QR=0;RO=0;RPL=124;RPP=10.7486;RPPR=0;RPR=96;RUN=1;SAF=112;SAP=3.16823;SAR=108;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:221:0,220:0:0:220:7473:-672.448,-66.2266,0 NC_002945.4 50470 . C T 5971.85 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=193;CIGAR=1X;DP=195;DPB=195;DPRA=0;EPP=10.0423;EPPR=0;GTI=0;LEN=1;MEANALT=2;MQ=60;MQMR=0;NS=1;NUMALT=1;ODDS=272.16;PAIRED=0.746114;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=6714;QR=0;RO=0;RPL=90;RPP=4.91174;RPPR=0;RPR=103;RUN=1;SAF=119;SAP=25.7939;SAR=74;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:195:0,193:0:0:193:6714:-604.088,-58.0988,0 NC_002945.4 59861 . A G 4760.67 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=153;CIGAR=1X;DP=153;DPB=153;DPRA=0;EPP=11.8807;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQ=60;MQMR=0;NS=1;NUMALT=1;ODDS=216.708;PAIRED=0.986928;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=5376;QR=0;RO=0;RPL=55;RPP=29.2525;RPPR=0;RPR=98;RUN=1;SAF=88;SAP=10.5182;SAR=65;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:153:0,153:0:0:153:5376:-483.917,-46.0576,0 NC_002945.4 69913 . T C 7603.9 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=255;CIGAR=1X;DP=257;DPB=257;DPRA=0;EPP=3.70006;EPPR=5.18177;GTI=0;LEN=1;MEANALT=2;MQ=60;MQMR=60;NS=1;NUMALT=1;ODDS=353.556;PAIRED=0.988235;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=8501;QR=12;RO=1;RPL=138;RPP=6.76567;RPPR=5.18177;RPR=117;RUN=1;SAF=127;SAP=3.01882;SAR=128;SRF=0;SRP=5.18177;SRR=1;TYPE=snp;technology.ILLUMINA=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:257:1,255:1:12:255:8501:-763.836,-75.9887,0 NC_002945.4 70082 . G A 5924.16 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=194;CIGAR=1X;DP=197;DPB=197;DPRA=0;EPP=14.4721;EPPR=0;GTI=0;LEN=1;MEANALT=3;MQ=60;MQMR=0;NS=1;NUMALT=1;ODDS=273.546;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=6664;QR=0;RO=0;RPL=117;RPP=20.9194;RPPR=0;RPR=77;RUN=1;SAF=86;SAP=8.42779;SAR=108;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:197:0,194:0:0:194:6664:-599.623,-58.3998,0 NC_002945.4 70438 . A G 6080.55 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=196;CIGAR=1X;DP=196;DPB=196;DPRA=0;EPP=4.60567;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQ=60;MQMR=0;NS=1;NUMALT=1;ODDS=276.319;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=6801;QR=0;RO=0;RPL=93;RPP=4.11819;RPPR=0;RPR=103;RUN=1;SAF=97;SAP=3.05462;SAR=99;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:196:0,196:0:0:196:6801:-612.063,-59.0019,0 NC_002945.4 79918 . G A 4959.13 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=161;CIGAR=1X;DP=163;DPB=163;DPRA=0;EPP=21.4746;EPPR=0;GTI=0;LEN=1;MEANALT=3;MQ=60;MQMR=0;NS=1;NUMALT=1;ODDS=227.799;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=5574;QR=0;RO=0;RPL=86;RPP=4.64228;RPPR=0;RPR=75;RUN=1;SAF=79;SAP=3.13169;SAR=82;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:163:0,161:0:0:161:5574:-501.545,-48.4658,0 NC_002945.4 96244 . G A 2669.63 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=93;CIGAR=1X;DP=97;DPB=97;DPRA=0;EPP=9.75821;EPPR=5.18177;GTI=0;LEN=1;MEANALT=2;MQ=60;MQMR=60;NS=1;NUMALT=1;ODDS=129.968;PAIRED=0.978495;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3027;QR=12;RO=1;RPL=36;RPP=13.3073;RPPR=5.18177;RPR=57;RUN=1;SAF=53;SAP=6.95631;SAR=40;SRF=1;SRP=5.18177;SRR=0;TYPE=snp;technology.ILLUMINA=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:97:1,93:1:12:93:3027:-271.401,-27.2177,0 NC_002945.4 103811 . C G 3774.93 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=142;CIGAR=1X;DP=142;DPB=142;DPRA=0;EPP=18.6694;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQ=53.662;MQMR=0;NS=1;NUMALT=1;ODDS=201.459;PAIRED=0.880282;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=4514;QR=0;RO=0;RPL=94;RPP=35.3683;RPPR=0;RPR=48;RUN=1;SAF=51;SAP=27.4776;SAR=91;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:142:0,142:0:0:142:4514:-388.32,-42.7463,0 NC_002945.4 103813 . A G 3658.32 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=131;CIGAR=1X;DP=131;DPB=131;DPRA=0;EPP=13.3704;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQ=53.1298;MQMR=0;NS=1;NUMALT=1;ODDS=186.21;PAIRED=0.870229;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=4389;QR=0;RO=0;RPL=84;RPP=25.703;RPPR=0;RPR=47;RUN=1;SAF=50;SAP=18.94;SAR=81;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:131:0,131:0:0:131:4389:-374.217,-39.4349,0 NC_002945.4 103814 . C G 3681.29 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=132;CIGAR=1X;DP=132;DPB=132;DPRA=0;EPP=10.9724;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQ=52.9167;MQMR=0;NS=1;NUMALT=1;ODDS=187.596;PAIRED=0.871212;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=4410;QR=0;RO=0;RPL=86;RPP=29.3312;RPPR=0;RPR=46;RUN=1;SAF=51;SAP=17.8158;SAR=81;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:132:0,132:0:0:132:4410:-376.535,-39.736,0 NC_002945.4 110198 . C T 6630.38 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=217;CIGAR=1X;DP=224;DPB=224;DPRA=0;EPP=10.3052;EPPR=5.18177;GTI=0;LEN=1;MEANALT=3;MQ=60;MQMR=60;NS=1;NUMALT=1;ODDS=284.617;PAIRED=0.995392;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=7472;QR=65;RO=4;RPL=91;RPP=15.2686;RPPR=11.6962;RPR=126;RUN=1;SAF=107;SAP=3.10036;SAR=110;SRF=1;SRP=5.18177;SRR=3;TYPE=snp;technology.ILLUMINA=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:224:4,217:4:65:217:7472:-666.392,-60.6573,0 NC_002945.4 114965 . C T 4618.35 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=150;CIGAR=1X;DP=151;DPB=151;DPRA=0;EPP=6.71628;EPPR=5.18177;GTI=0;LEN=1;MEANALT=1;MQ=60;MQMR=60;NS=1;NUMALT=1;ODDS=207.774;PAIRED=0.986667;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=5180;QR=14;RO=1;RPL=75;RPP=3.0103;RPPR=5.18177;RPR=75;RUN=1;SAF=74;SAP=3.06821;SAR=76;SRF=1;SRP=5.18177;SRR=0;TYPE=snp;technology.ILLUMINA=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:151:1,150:1:14:150:5180:-464.867,-44.0555,0 NC_002945.4 117800 . C G 4459.46 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=167;CIGAR=1X;DP=170;DPB=170;DPRA=0;EPP=4.58364;EPPR=9.52472;GTI=0;LEN=1;MEANALT=1;MQ=60;MQMR=60;NS=1;NUMALT=1;ODDS=224.964;PAIRED=0.994012;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=5008;QR=37;RO=3;RPL=89;RPP=4.58364;RPPR=9.52472;RPR=78;RUN=1;SAF=78;SAP=4.58364;SAR=89;SRF=3;SRP=9.52472;SRR=0;TYPE=snp;technology.ILLUMINA=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:170:3,167:3:37:167:5008:-447.336,-47.7218,0 NC_002945.4 127447 . G C 4341.27 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=148;CIGAR=1X;DP=149;DPB=149;DPRA=0;EPP=12.9286;EPPR=5.18177;GTI=0;LEN=1;MEANALT=1;MQ=60;MQMR=60;NS=1;NUMALT=1;ODDS=205.475;PAIRED=0.97973;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4922;QR=12;RO=1;RPL=98;RPP=36.8148;RPPR=5.18177;RPR=50;RUN=1;SAF=63;SAP=10.1116;SAR=85;SRF=1;SRP=5.18177;SRR=0;TYPE=snp;technology.ILLUMINA=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:149:1,148:1:12:148:4922:-441.892,-43.6535,0 NC_002945.4 130166 . C T 5026.14 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=169;CIGAR=1X;DP=170;DPB=170;DPRA=0;EPP=3.12594;EPPR=0;GTI=0;LEN=1;MEANALT=2;MQ=60;MQMR=0;NS=1;NUMALT=1;ODDS=238.889;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=5630;QR=0;RO=0;RPL=83;RPP=3.12594;RPPR=0;RPR=86;RUN=1;SAF=93;SAP=6.72365;SAR=76;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:170:0,169:0:0:169:5630:-506.645,-50.8741,0 NC_002945.4 130237 . T C 5794.53 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=191;CIGAR=1X;DP=194;DPB=194;DPRA=0;EPP=9.02448;EPPR=0;GTI=0;LEN=1;MEANALT=3;MQ=60;MQMR=0;NS=1;NUMALT=1;ODDS=269.387;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=6496;QR=0;RO=0;RPL=83;RPP=10.1159;RPPR=0;RPR=108;RUN=1;SAF=99;SAP=3.56738;SAR=92;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:194:0,191:0:0:191:6496:-584.534,-57.4967,0 NC_002945.4 140686 . A G 8220.71 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=271;CIGAR=1X;DP=274;DPB=274;DPRA=0;EPP=4.81318;EPPR=5.18177;GTI=0;LEN=1;MEANALT=2;MQ=60;MQMR=60;NS=1;NUMALT=1;ODDS=375.246;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=9207;QR=14;RO=1;RPL=159;RPP=20.7106;RPPR=5.18177;RPR=112;RUN=1;SAF=133;SAP=3.21062;SAR=138;SRF=0;SRP=5.18177;SRR=1;TYPE=snp;technology.ILLUMINA=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:274:1,271:1:14:271:9207:-827.085,-80.6185,0 NC_002945.4 143799 . T C 6607.75 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=229;CIGAR=1X;DP=234;DPB=234;DPRA=0;EPP=4.61283;EPPR=0;GTI=0;LEN=1;MEANALT=3;MQ=60;MQMR=0;NS=1;NUMALT=1;ODDS=322.067;PAIRED=0.995633;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=7412;QR=0;RO=0;RPL=104;RPP=7.19204;RPPR=0;RPR=125;RUN=1;SAF=93;SAP=20.5433;SAR=136;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:234:0,229:0:0:229:7412:-666.943,-68.9359,0 NC_002945.4 144992 . G A 5817.34 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=190;CIGAR=1X;DP=191;DPB=191;DPRA=0;EPP=5.25035;EPPR=0;GTI=0;LEN=1;MEANALT=2;MQ=60;MQMR=0;NS=1;NUMALT=1;ODDS=268.001;PAIRED=0.994737;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=6525;QR=0;RO=0;RPL=111;RPP=14.7134;RPPR=0;RPR=79;RUN=1;SAF=87;SAP=5.93607;SAR=103;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:191:0,190:0:0:190:6525:-587.132,-57.1957,0 NC_002945.4 148871 . G A 8674.57 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=283;CIGAR=1X;DP=284;DPB=284;DPRA=0;EPP=4.73674;EPPR=0;GTI=0;LEN=1;MEANALT=2;MQ=60;MQMR=0;NS=1;NUMALT=1;ODDS=396.926;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=9722;QR=0;RO=0;RPL=173;RPP=33.4646;RPPR=0;RPR=110;RUN=1;SAF=142;SAP=3.01797;SAR=141;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:284:0,283:0:0:283:9722:-874.663,-85.1915,0 NC_002945.4 151025 . N . . . . GT ./. NC_002945.4 151026 . N . . . . GT ./. NC_002945.4 151027 . N . . . . GT ./. NC_002945.4 151028 . N . . . . GT ./. NC_002945.4 151029 . N . . . . GT ./. NC_002945.4 151030 . N . . . . GT ./. NC_002945.4 151031 . N . . . . GT ./. NC_002945.4 151032 . N . . . . GT ./. NC_002945.4 151033 . N . . . . GT ./. NC_002945.4 151034 . N . . . . GT ./. NC_002945.4 151035 . N . . . . GT ./. NC_002945.4 151036 . N . . . . GT ./. NC_002945.4 151037 . N . . . . GT ./. NC_002945.4 151038 . N . . . . GT ./. NC_002945.4 151039 . N . . . . GT ./. NC_002945.4 151040 . N . . . . GT ./. NC_002945.4 159370 . A G 4358.72 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=145;CIGAR=1X;DP=145;DPB=145;DPRA=0;EPP=6.37983;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQ=59.8897;MQMR=0;NS=1;NUMALT=1;ODDS=205.618;PAIRED=0.97931;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=4890;QR=0;RO=0;RPL=78;RPP=4.82236;RPPR=0;RPR=67;RUN=1;SAF=66;SAP=5.54119;SAR=79;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:145:0,145:0:0:145:4890:-440.178,-43.6494,0 NC_002945.4 160535 . T C 5301.51 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=178;CIGAR=1X;DP=181;DPB=181;DPRA=0;EPP=5.40136;EPPR=7.35324;GTI=0;LEN=1;MEANALT=2;MQ=60;MQMR=60;NS=1;NUMALT=1;ODDS=243.206;PAIRED=0.994382;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=5950;QR=26;RO=2;RPL=82;RPP=5.40136;RPPR=7.35324;RPR=96;RUN=1;SAF=78;SAP=8.91475;SAR=100;SRF=2;SRP=7.35324;SRR=0;TYPE=snp;technology.ILLUMINA=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:181:2,178:2:26:178:5950:-533.081,-51.8387,0 NC_002945.4 165799 . G A 4432.73 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=150;CIGAR=1X;DP=152;DPB=152;DPRA=0;EPP=3.0103;EPPR=0;GTI=0;LEN=1;MEANALT=2;MQ=60;MQMR=0;NS=1;NUMALT=1;ODDS=212.549;PAIRED=0.993333;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=4970;QR=0;RO=0;RPL=67;RPP=6.71628;RPPR=0;RPR=83;RUN=1;SAF=72;SAP=3.53145;SAR=78;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:152:0,150:0:0:150:4970:-447.254,-45.1545,0 NC_002945.4 166696 . A G 5233.3 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=188;CIGAR=1X;DP=190;DPB=190;DPRA=0;EPP=3.42611;EPPR=5.18177;GTI=0;LEN=1;MEANALT=2;MQ=59.8032;MQMR=60;NS=1;NUMALT=1;ODDS=258.122;PAIRED=0.984043;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=5904;QR=25;RO=1;RPL=113;RPP=19.6891;RPPR=5.18177;RPR=75;RUN=1;SAF=86;SAP=5.9672;SAR=102;SRF=0;SRP=5.18177;SRR=1;TYPE=snp;technology.ILLUMINA=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:190:1,188:1:25:188:5904:-528.14,-54.5798,0 NC_002945.4 179885 . G A 4164.8 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=147;CIGAR=1X;DP=152;DPB=152;DPRA=0;EPP=7.27939;EPPR=13.8677;GTI=0;LEN=1;MEANALT=1;MQ=60;MQMR=60;NS=1;NUMALT=1;ODDS=192.743;PAIRED=0.972789;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4683;QR=60;RO=5;RPL=76;RPP=3.3796;RPPR=13.8677;RPR=71;RUN=1;SAF=77;SAP=3.73412;SAR=70;SRF=5;SRP=13.8677;SRR=0;TYPE=snp;technology.ILLUMINA=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:152:5,147:5:60:147:4683:-416.046,-40.2366,0 NC_002945.4 189083 . A G 3008.28 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=115;CIGAR=1X;DP=115;DPB=115;DPRA=0;EPP=3.02918;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQ=60;MQMR=0;NS=1;NUMALT=1;ODDS=164.029;PAIRED=0.991304;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=3426;QR=0;RO=0;RPL=34;RPP=44.7215;RPPR=0;RPR=81;RUN=1;SAF=59;SAP=3.18024;SAR=56;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:115:0,115:0:0:115:3426:-308.491,-34.6185,0 NC_002945.4 192177 . A G 5535.44 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=179;CIGAR=1X;DP=181;DPB=181;DPRA=0;EPP=6.5162;EPPR=7.35324;GTI=0;LEN=1;MEANALT=1;MQ=60;MQMR=60;NS=1;NUMALT=1;ODDS=243.641;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=6206;QR=29;RO=2;RPL=88;RPP=3.11948;RPPR=7.35324;RPR=91;RUN=1;SAF=90;SAP=3.02243;SAR=89;SRF=2;SRP=7.35324;SRR=0;TYPE=snp;technology.ILLUMINA=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:181:2,179:2:29:179:6206:-555.775,-51.7315,0 NC_002945.4 198890 . T G 6499.49 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=214;CIGAR=1X;DP=214;DPB=214;DPRA=0;EPP=3.0103;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQ=60;MQMR=0;NS=1;NUMALT=1;ODDS=301.272;PAIRED=0.990654;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=7311;QR=0;RO=0;RPL=133;RPP=30.448;RPPR=0;RPR=81;RUN=1;SAF=88;SAP=17.6627;SAR=126;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:214:0,214:0:0:214:7311:-657.965,-64.4204,0 NC_002945.4 223919 . C T 3001.77 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=106;CIGAR=1X;DP=109;DPB=109;DPRA=0;EPP=11.2045;EPPR=7.35324;GTI=0;LEN=1;MEANALT=2;MQ=60;MQMR=60;NS=1;NUMALT=1;ODDS=144.848;PAIRED=0.981132;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3422;QR=24;RO=2;RPL=62;RPP=9.64763;RPPR=7.35324;RPR=44;RUN=1;SAF=71;SAP=29.5596;SAR=35;SRF=0;SRP=7.35324;SRR=2;TYPE=snp;technology.ILLUMINA=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:109:2,106:2:24:106:3422:-305.865,-30.3513,0 NC_002945.4 228109 . C T 4557.85 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=152;CIGAR=1X;DP=155;DPB=155;DPRA=0;EPP=3.06744;EPPR=9.52472;GTI=0;LEN=1;MEANALT=1;MQ=60;MQMR=60;NS=1;NUMALT=1;ODDS=202.036;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=5123;QR=38;RO=3;RPL=75;RPP=3.06744;RPPR=3.73412;RPR=77;RUN=1;SAF=76;SAP=3.0103;SAR=76;SRF=2;SRP=3.73412;SRR=1;TYPE=snp;technology.ILLUMINA=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:155:3,152:3:38:152:5123:-457.61,-43.113,0 NC_002945.4 230661 . A G 6238.38 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=201;CIGAR=1X;DP=204;DPB=204;DPRA=0;EPP=8.72527;EPPR=0;GTI=0;LEN=1;MEANALT=2;MQ=60;MQMR=0;NS=1;NUMALT=1;ODDS=283.25;PAIRED=0.985075;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=7008;QR=0;RO=0;RPL=80;RPP=21.1707;RPPR=0;RPR=121;RUN=1;SAF=112;SAP=8.72527;SAR=89;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:204:0,201:0:0:201:7008:-630.548,-60.507,0 NC_002945.4 232188 . G C 3092.5 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=116;CIGAR=1X;DP=117;DPB=117;DPRA=0;EPP=9.07545;EPPR=5.18177;GTI=0;LEN=1;MEANALT=1;MQ=60;MQMR=60;NS=1;NUMALT=1;ODDS=161.356;PAIRED=0.965517;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3527;QR=12;RO=1;RPL=81;RPP=42.621;RPPR=5.18177;RPR=35;RUN=1;SAF=56;SAP=3.30981;SAR=60;SRF=1;SRP=5.18177;SRR=0;TYPE=snp;technology.ILLUMINA=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:117:1,116:1:12:116:3527:-316.409,-34.0205,0 NC_002945.4 295519 . T C 6464.87 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=212;CIGAR=1X;DP=214;DPB=214;DPRA=0;EPP=16.285;EPPR=0;GTI=0;LEN=1;MEANALT=2;MQ=59.7736;MQMR=0;NS=1;NUMALT=1;ODDS=298.5;PAIRED=0.957547;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=7260;QR=0;RO=0;RPL=89;RPP=14.851;RPPR=0;RPR=123;RUN=1;SAF=111;SAP=4.03458;SAR=101;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:214:0,212:0:0:212:7260:-652.886,-63.8184,0 NC_002945.4 299636 . A G 7759.67 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=245;CIGAR=1X;DP=245;DPB=245;DPRA=0;EPP=3.09007;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQ=60;MQMR=0;NS=1;NUMALT=1;ODDS=344.247;PAIRED=0.995918;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=8667;QR=0;RO=0;RPL=120;RPP=3.23188;RPPR=0;RPR=125;RUN=1;SAF=121;SAP=3.09007;SAR=124;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:245:0,245:0:0:245:8667:-779.885,-73.7524,0 NC_002945.4 304339 . G A 5352.38 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=174;CIGAR=1X;DP=175;DPB=175;DPRA=0;EPP=17.4369;EPPR=0;GTI=0;LEN=1;MEANALT=2;MQ=60;MQMR=0;NS=1;NUMALT=1;ODDS=245.82;PAIRED=0.988506;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=6025;QR=0;RO=0;RPL=106;RPP=21.031;RPPR=0;RPR=68;RUN=1;SAF=88;SAP=3.06022;SAR=86;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:175:0,174:0:0:174:6025:-542.149,-52.3792,0 NC_002945.4 306656 . N . . . . GT ./. NC_002945.4 306657 . N . . . . GT ./. NC_002945.4 306658 . N . . . . GT ./. NC_002945.4 306659 . N . . . . GT ./. NC_002945.4 306660 . N . . . . GT ./. NC_002945.4 306661 . N . . . . GT ./. NC_002945.4 306662 . N . . . . GT ./. NC_002945.4 306663 . N . . . . GT ./. NC_002945.4 306664 . N . . . . GT ./. NC_002945.4 306665 . N . . . . GT ./. NC_002945.4 306666 . N . . . . GT ./. NC_002945.4 306667 . N . . . . GT ./. NC_002945.4 306668 . N . . . . GT ./. NC_002945.4 306669 . N . . . . GT ./. NC_002945.4 306670 . N . . . . GT ./. NC_002945.4 306671 . N . . . . GT ./. NC_002945.4 306672 . N . . . . GT ./. NC_002945.4 306673 . N . . . . GT ./. NC_002945.4 306674 . N . . . . GT ./. NC_002945.4 306675 . N . . . . GT ./. NC_002945.4 306676 . N . . . . GT ./. NC_002945.4 306677 . N . . . . GT ./. NC_002945.4 306678 . N . . . . GT ./. NC_002945.4 306679 . N . . . . GT ./. NC_002945.4 306680 . N . . . . GT ./. NC_002945.4 306681 . N . . . . GT ./. NC_002945.4 306682 . N . . . . GT ./. NC_002945.4 306683 . N . . . . GT ./. NC_002945.4 306684 . N . . . . GT ./. NC_002945.4 306685 . N . . . . GT ./. NC_002945.4 306686 . N . . . . GT ./. NC_002945.4 306687 . N . . . . GT ./. NC_002945.4 306688 . N . . . . GT ./. NC_002945.4 306689 . N . . . . GT ./. NC_002945.4 306690 . N . . . . GT ./. NC_002945.4 306691 . N . . . . GT ./. NC_002945.4 306692 . N . . . . GT ./. NC_002945.4 306693 . N . . . . GT ./. NC_002945.4 306694 . N . . . . GT ./. NC_002945.4 306695 . N . . . . GT ./. NC_002945.4 306696 . N . . . . GT ./. NC_002945.4 306697 . N . . . . GT ./. NC_002945.4 306698 . N . . . . GT ./. NC_002945.4 306699 . N . . . . GT ./. NC_002945.4 306700 . N . . . . GT ./. NC_002945.4 306701 . N . . . . GT ./. NC_002945.4 306702 . N . . . . GT ./. NC_002945.4 306703 . N . . . . GT ./. NC_002945.4 306704 . N . . . . GT ./. NC_002945.4 306705 . N . . . . GT ./. NC_002945.4 306706 . N . . . . GT ./. NC_002945.4 306707 . N . . . . GT ./. NC_002945.4 306708 . N . . . . GT ./. NC_002945.4 306709 . N . . . . GT ./. NC_002945.4 306710 . N . . . . GT ./. NC_002945.4 319911 . C T 5117.89 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=173;CIGAR=1X;DP=174;DPB=174;DPRA=0;EPP=3.02285;EPPR=0;GTI=0;LEN=1;MEANALT=2;MQ=59.815;MQMR=0;NS=1;NUMALT=1;ODDS=244.434;PAIRED=0.99422;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=5734;QR=0;RO=0;RPL=95;RPP=6.63779;RPPR=0;RPR=78;RUN=1;SAF=81;SAP=4.52908;SAR=92;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:174:0,173:0:0:173:5734:-515.956,-52.0782,0 NC_002945.4 332124 . C T 235.47099999999998 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=10;CIGAR=1X;DP=11;DPB=11;DPRA=0;EPP=6.48466;EPPR=0;GTI=0;LEN=1;MEANALT=2;MQ=59.1;MQMR=0;NS=1;NUMALT=1;ODDS=18.4681;PAIRED=0.9;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=314;QR=0;RO=0;RPL=10;RPP=24.725;RPPR=0;RPR=0;RUN=1;SAF=7;SAP=6.48466;SAR=3;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:11:0,10:0:0:10:314:-28.4197,-3.0103,0 NC_002945.4 332128 . C G 201.09 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=10;CIGAR=1X;DP=10;DPB=10;DPRA=0;EPP=10.8276;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQ=59.1;MQMR=0;NS=1;NUMALT=1;ODDS=18.4681;PAIRED=0.9;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=284;QR=0;RO=0;RPL=10;RPP=24.725;RPPR=0;RPR=0;RUN=1;SAF=8;SAP=10.8276;SAR=2;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:10:0,10:0:0:10:284:-25.8335,-3.0103,0 NC_002945.4 332144 . C T 125.417 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=6;CIGAR=1X;DP=6;DPB=6;DPRA=0;EPP=16.0391;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQ=60;MQMR=0;NS=1;NUMALT=1;ODDS=12.9229;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=196;QR=0;RO=0;RPL=6;RPP=16.0391;RPPR=0;RPR=0;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:6:0,6:0:0:6:196:-17.9602,-1.80618,0 NC_002945.4 332145 . G T 139.142 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=6;CIGAR=1X;DP=6;DPB=6;DPRA=0;EPP=16.0391;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQ=60;MQMR=0;NS=1;NUMALT=1;ODDS=12.9229;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=211;QR=0;RO=0;RPL=6;RPP=16.0391;RPPR=0;RPR=0;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:6:0,6:0:0:6:211:-19.3328,-1.80618,0 NC_002945.4 332154 . G C 126.29799999999999 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=6;CIGAR=1X;DP=6;DPB=6;DPRA=0;EPP=16.0391;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQ=60;MQMR=0;NS=1;NUMALT=1;ODDS=12.9229;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=197;QR=0;RO=0;RPL=6;RPP=16.0391;RPPR=0;RPR=0;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:6:0,6:0:0:6:197:-18.0484,-1.80618,0 NC_002945.4 332160 . N . . . . GT ./. NC_002945.4 332161 . N . . . . GT ./. NC_002945.4 332162 . N . . . . GT ./. NC_002945.4 332163 . N . . . . GT ./. NC_002945.4 332164 . N . . . . GT ./. NC_002945.4 332165 . N . . . . GT ./. NC_002945.4 332166 . N . . . . GT ./. NC_002945.4 332167 . N . . . . GT ./. NC_002945.4 332168 . N . . . . GT ./. NC_002945.4 332169 . N . . . . GT ./. NC_002945.4 332170 . N . . . . GT ./. NC_002945.4 332171 . N . . . . GT ./. NC_002945.4 332172 . N . . . . GT ./. NC_002945.4 332173 . N . . . . GT ./. NC_002945.4 332174 . N . . . . GT ./. NC_002945.4 332175 . N . . . . GT ./. NC_002945.4 332176 . N . . . . GT ./. NC_002945.4 332177 . N . . . . GT ./. NC_002945.4 332178 . N . . . . GT ./. NC_002945.4 332179 . N . . . . GT ./. NC_002945.4 332180 . N . . . . GT ./. NC_002945.4 332181 . N . . . . GT ./. NC_002945.4 332182 . N . . . . GT ./. NC_002945.4 332183 . N . . . . GT ./. NC_002945.4 332184 . N . . . . GT ./. NC_002945.4 332185 . N . . . . GT ./. NC_002945.4 332186 . N . . . . GT ./. NC_002945.4 332187 . N . . . . GT ./. NC_002945.4 332188 . N . . . . GT ./. NC_002945.4 332189 . N . . . . GT ./. NC_002945.4 332190 . N . . . . GT ./. NC_002945.4 332191 . N . . . . GT ./. NC_002945.4 332192 . N . . . . GT ./. NC_002945.4 332193 . N . . . . GT ./. NC_002945.4 332215 . C G 379.908 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=17;CIGAR=1X;DP=17;DPB=17;DPRA=0;EPP=39.9253;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQ=57.1176;MQMR=0;NS=1;NUMALT=1;ODDS=28.1722;PAIRED=0.882353;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=596;QR=0;RO=0;RPL=0;RPP=39.9253;RPPR=0;RPR=17;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:17:0,17:0:0:17:596:-53.3433,-5.11751,0 NC_002945.4 332218 . A G 439.338 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=19;CIGAR=1X;DP=19;DPB=19;DPRA=0;EPP=44.2683;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQ=57.4211;MQMR=0;NS=1;NUMALT=1;ODDS=30.9448;PAIRED=0.894737;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=681;QR=0;RO=0;RPL=0;RPP=44.2683;RPPR=0;RPR=19;RUN=1;SAF=19;SAP=44.2683;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:19:0,19:0:0:19:681:-61.0925,-5.71957,0 NC_002945.4 333010 . T G 2567.13 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=84;CIGAR=1X;DP=84;DPB=84;DPRA=0;EPP=8.07707;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQ=60;MQMR=0;NS=1;NUMALT=1;ODDS=121.054;PAIRED=0.964286;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=2912;QR=0;RO=0;RPL=51;RPP=11.386;RPPR=0;RPR=33;RUN=1;SAF=52;SAP=13.3506;SAR=32;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:84:0,84:0:0:84:2912:-262.265,-25.2865,0 NC_002945.4 333486 . N . . . . GT ./. NC_002945.4 333487 . N . . . . GT ./. NC_002945.4 333488 . N . . . . GT ./. NC_002945.4 333489 . N . . . . GT ./. NC_002945.4 333490 . N . . . . GT ./. NC_002945.4 333491 . N . . . . GT ./. NC_002945.4 333492 . N . . . . GT ./. NC_002945.4 333493 . N . . . . GT ./. NC_002945.4 333494 . N . . . . GT ./. NC_002945.4 333495 . N . . . . GT ./. NC_002945.4 333496 . N . . . . GT ./. NC_002945.4 333497 . N . . . . GT ./. NC_002945.4 333498 . N . . . . GT ./. NC_002945.4 333499 . N . . . . GT ./. NC_002945.4 333500 . N . . . . GT ./. NC_002945.4 333501 . N . . . . GT ./. NC_002945.4 333502 . N . . . . GT ./. NC_002945.4 333503 . N . . . . GT ./. NC_002945.4 333504 . N . . . . GT ./. NC_002945.4 333505 . N . . . . GT ./. NC_002945.4 333506 . N . . . . GT ./. NC_002945.4 333507 . N . . . . GT ./. NC_002945.4 333508 . N . . . . GT ./. NC_002945.4 333509 . N . . . . GT ./. NC_002945.4 333510 . N . . . . GT ./. NC_002945.4 333511 . N . . . . GT ./. NC_002945.4 333512 . N . . . . GT ./. NC_002945.4 333513 . N . . . . GT ./. NC_002945.4 333514 . N . . . . GT ./. NC_002945.4 333515 . N . . . . GT ./. NC_002945.4 333516 . N . . . . GT ./. NC_002945.4 333517 . N . . . . GT ./. NC_002945.4 333518 . N . . . . GT ./. NC_002945.4 333519 . N . . . . GT ./. NC_002945.4 333520 . N . . . . GT ./. NC_002945.4 333521 . N . . . . GT ./. NC_002945.4 333522 . N . . . . GT ./. NC_002945.4 333523 . N . . . . GT ./. NC_002945.4 333524 . N . . . . GT ./. NC_002945.4 333525 . N . . . . GT ./. NC_002945.4 333526 . N . . . . GT ./. NC_002945.4 333527 . N . . . . GT ./. NC_002945.4 333528 . N . . . . GT ./. NC_002945.4 333529 . N . . . . GT ./. NC_002945.4 333530 . N . . . . GT ./. NC_002945.4 333531 . N . . . . GT ./. NC_002945.4 333532 . N . . . . GT ./. NC_002945.4 333533 . N . . . . GT ./. NC_002945.4 333534 . N . . . . GT ./. NC_002945.4 333535 . N . . . . GT ./. NC_002945.4 333536 . N . . . . GT ./. NC_002945.4 333537 . N . . . . GT ./. NC_002945.4 333538 . N . . . . GT ./. NC_002945.4 333539 . N . . . . GT ./. NC_002945.4 333540 . N . . . . GT ./. NC_002945.4 333541 . N . . . . GT ./. NC_002945.4 333542 . N . . . . GT ./. NC_002945.4 333543 . N . . . . GT ./. NC_002945.4 333544 . N . . . . GT ./. NC_002945.4 333545 . N . . . . GT ./. NC_002945.4 333546 . N . . . . GT ./. NC_002945.4 333547 . N . . . . GT ./. NC_002945.4 333548 . N . . . . GT ./. NC_002945.4 333549 . N . . . . GT ./. NC_002945.4 333550 . N . . . . GT ./. NC_002945.4 333551 . N . . . . GT ./. NC_002945.4 333552 . N . . . . GT ./. NC_002945.4 333553 . N . . . . GT ./. NC_002945.4 333590 . N . . . . GT ./. NC_002945.4 333591 . N . . . . GT ./. NC_002945.4 333592 . N . . . . GT ./. NC_002945.4 333593 . N . . . . GT ./. NC_002945.4 333594 . N . . . . GT ./. NC_002945.4 333595 . N . . . . GT ./. NC_002945.4 333596 . N . . . . GT ./. NC_002945.4 333597 . N . . . . GT ./. NC_002945.4 333598 . N . . . . GT ./. NC_002945.4 333599 . N . . . . GT ./. NC_002945.4 333600 . N . . . . GT ./. NC_002945.4 333601 . N . . . . GT ./. NC_002945.4 333602 . N . . . . GT ./. NC_002945.4 333603 . N . . . . GT ./. NC_002945.4 333604 . N . . . . GT ./. NC_002945.4 333605 . N . . . . GT ./. NC_002945.4 333606 . N . . . . GT ./. NC_002945.4 333607 . N . . . . GT ./. NC_002945.4 333608 . N . . . . GT ./. NC_002945.4 333609 . N . . . . GT ./. NC_002945.4 333610 . N . . . . GT ./. NC_002945.4 333611 . N . . . . GT ./. NC_002945.4 333612 . N . . . . GT ./. NC_002945.4 333613 . N . . . . GT ./. NC_002945.4 333614 . N . . . . GT ./. NC_002945.4 333615 . N . . . . GT ./. NC_002945.4 333616 . N . . . . GT ./. NC_002945.4 333617 . N . . . . GT ./. NC_002945.4 333618 . N . . . . GT ./. NC_002945.4 333619 . N . . . . GT ./. NC_002945.4 333620 . N . . . . GT ./. NC_002945.4 333621 . N . . . . GT ./. NC_002945.4 333622 . N . . . . GT ./. NC_002945.4 333623 . N . . . . GT ./. NC_002945.4 333624 . N . . . . GT ./. NC_002945.4 333625 . N . . . . GT ./. NC_002945.4 333626 . N . . . . GT ./. NC_002945.4 333627 . N . . . . GT ./. NC_002945.4 333628 . N . . . . GT ./. NC_002945.4 333629 . N . . . . GT ./. NC_002945.4 333630 . N . . . . GT ./. NC_002945.4 333631 . N . . . . GT ./. NC_002945.4 333632 . N . . . . GT ./. NC_002945.4 333633 . N . . . . GT ./. NC_002945.4 333634 . N . . . . GT ./. NC_002945.4 334320 . T C 2194.66 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=79;CIGAR=1X;DP=80;DPB=80;DPRA=0;EPP=3.69747;EPPR=0;GTI=0;LEN=1;MEANALT=2;MQ=53.4051;MQMR=0;NS=1;NUMALT=1;ODDS=114.122;PAIRED=0.987342;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=2577;QR=0;RO=0;RPL=41;RPP=3.25768;RPPR=0;RPR=38;RUN=1;SAF=46;SAP=7.6556;SAR=33;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:80:0,79:0:0:79:2577:-223.164,-23.7814,0 NC_002945.4 334323 . T C 2171.15 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=79;CIGAR=1X;DP=79;DPB=79;DPRA=0;EPP=5.23675;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQ=53.4051;MQMR=0;NS=1;NUMALT=1;ODDS=114.122;PAIRED=0.987342;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=2540;QR=0;RO=0;RPL=40;RPP=3.03779;RPPR=0;RPR=39;RUN=1;SAF=45;SAP=6.33623;SAR=34;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:79:0,79:0:0:79:2540:-220.812,-23.7814,0 NC_002945.4 336477 . N . . . . GT ./. NC_002945.4 336478 . N . . . . GT ./. NC_002945.4 336479 . N . . . . GT ./. NC_002945.4 336480 . N . . . . GT ./. NC_002945.4 336481 . N . . . . GT ./. NC_002945.4 336482 . N . . . . GT ./. NC_002945.4 336483 . N . . . . GT ./. NC_002945.4 336484 . N . . . . GT ./. NC_002945.4 336485 . N . . . . GT ./. NC_002945.4 336486 . N . . . . GT ./. NC_002945.4 336487 . N . . . . GT ./. NC_002945.4 336488 . N . . . . GT ./. NC_002945.4 336489 . N . . . . GT ./. NC_002945.4 336590 . N . . . . GT ./. NC_002945.4 336591 . N . . . . GT ./. NC_002945.4 336592 . N . . . . GT ./. NC_002945.4 336593 . N . . . . GT ./. NC_002945.4 336594 . N . . . . GT ./. NC_002945.4 336595 . N . . . . GT ./. NC_002945.4 336596 . N . . . . GT ./. NC_002945.4 336597 . N . . . . GT ./. NC_002945.4 336598 . N . . . . GT ./. NC_002945.4 336599 . N . . . . GT ./. NC_002945.4 336600 . N . . . . GT ./. NC_002945.4 336601 . N . . . . GT ./. NC_002945.4 336602 . N . . . . GT ./. NC_002945.4 336603 . N . . . . GT ./. NC_002945.4 336604 . N . . . . GT ./. NC_002945.4 336605 . N . . . . GT ./. NC_002945.4 336606 . N . . . . GT ./. NC_002945.4 336607 . N . . . . GT ./. NC_002945.4 336608 . N . . . . GT ./. NC_002945.4 336609 . N . . . . GT ./. NC_002945.4 336610 . N . . . . GT ./. NC_002945.4 336611 . N . . . . GT ./. NC_002945.4 336612 . N . . . . GT ./. NC_002945.4 336613 . N . . . . GT ./. NC_002945.4 336614 . N . . . . GT ./. NC_002945.4 336615 . N . . . . GT ./. NC_002945.4 336616 . N . . . . GT ./. NC_002945.4 336617 . N . . . . GT ./. NC_002945.4 336618 . N . . . . GT ./. NC_002945.4 336619 . N . . . . GT ./. NC_002945.4 336620 . N . . . . GT ./. NC_002945.4 336621 . N . . . . GT ./. NC_002945.4 336622 . N . . . . GT ./. NC_002945.4 336623 . N . . . . GT ./. NC_002945.4 336624 . N . . . . GT ./. NC_002945.4 336625 . N . . . . GT ./. NC_002945.4 336626 . N . . . . GT ./. NC_002945.4 336627 . N . . . . GT ./. NC_002945.4 336628 . N . . . . GT ./. NC_002945.4 336629 . N . . . . GT ./. NC_002945.4 336630 . N . . . . GT ./. NC_002945.4 336631 . N . . . . GT ./. NC_002945.4 336632 . N . . . . GT ./. NC_002945.4 336633 . N . . . . GT ./. NC_002945.4 336634 . N . . . . GT ./. NC_002945.4 336635 . N . . . . GT ./. NC_002945.4 336636 . N . . . . GT ./. NC_002945.4 336637 . N . . . . GT ./. NC_002945.4 336638 . N . . . . GT ./. NC_002945.4 336639 . N . . . . GT ./. NC_002945.4 339369 . N . . . . GT ./. NC_002945.4 339370 . N . . . . GT ./. NC_002945.4 339371 . N . . . . GT ./. NC_002945.4 339372 . N . . . . GT ./. NC_002945.4 339373 . N . . . . GT ./. NC_002945.4 339374 . N . . . . GT ./. NC_002945.4 339375 . N . . . . GT ./. NC_002945.4 339376 . N . . . . GT ./. NC_002945.4 339377 . N . . . . GT ./. NC_002945.4 339378 . N . . . . GT ./. NC_002945.4 339379 . N . . . . GT ./. NC_002945.4 339380 . N . . . . GT ./. NC_002945.4 339381 . N . . . . GT ./. NC_002945.4 339382 . N . . . . GT ./. NC_002945.4 339383 . N . . . . GT ./. NC_002945.4 339384 . N . . . . GT ./. NC_002945.4 339385 . N . . . . GT ./. NC_002945.4 339386 . N . . . . GT ./. NC_002945.4 339387 . N . . . . GT ./. NC_002945.4 339388 . N . . . . GT ./. NC_002945.4 339389 . N . . . . GT ./. NC_002945.4 339390 . N . . . . GT ./. NC_002945.4 339391 . N . . . . GT ./. NC_002945.4 339392 . N . . . . GT ./. NC_002945.4 339393 . N . . . . GT ./. NC_002945.4 339394 . N . . . . GT ./. NC_002945.4 339395 . N . . . . GT ./. NC_002945.4 339396 . N . . . . GT ./. NC_002945.4 339397 . N . . . . GT ./. NC_002945.4 339398 . N . . . . GT ./. NC_002945.4 339399 . N . . . . GT ./. NC_002945.4 339400 . N . . . . GT ./. NC_002945.4 339401 . N . . . . GT ./. NC_002945.4 339402 . N . . . . GT ./. NC_002945.4 339403 . N . . . . GT ./. NC_002945.4 339404 . N . . . . GT ./. NC_002945.4 339405 . N . . . . GT ./. NC_002945.4 339406 . N . . . . GT ./. NC_002945.4 339407 . N . . . . GT ./. NC_002945.4 339408 . N . . . . GT ./. NC_002945.4 339409 . N . . . . GT ./. NC_002945.4 339410 . N . . . . GT ./. NC_002945.4 339411 . N . . . . GT ./. NC_002945.4 340088 . G A 2525.17 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=81;CIGAR=1X;DP=82;DPB=82;DPRA=0;EPP=17.1919;EPPR=0;GTI=0;LEN=1;MEANALT=2;MQ=58.5062;MQMR=0;NS=1;NUMALT=1;ODDS=116.895;PAIRED=0.987654;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=2863;QR=0;RO=0;RPL=39;RPP=3.25157;RPPR=0;RPR=42;RUN=1;SAF=39;SAP=3.25157;SAR=42;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:82:0,81:0:0:81:2863:-257.146,-24.3834,0 NC_002945.4 340090 . C T 2327.84 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=80;CIGAR=1X;DP=80;DPB=80;DPRA=0;EPP=18.6449;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQ=58.4;MQMR=0;NS=1;NUMALT=1;ODDS=115.509;PAIRED=0.9875;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=2643;QR=0;RO=0;RPL=40;RPP=3.0103;RPPR=0;RPR=40;RUN=1;SAF=38;SAP=3.44459;SAR=42;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:80:0,80:0:0:80:2643:-237.547,-24.0824,0 NC_002945.4 340091 . G A 2328.64 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=80;CIGAR=1X;DP=80;DPB=80;DPRA=0;EPP=16.1477;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQ=58.4;MQMR=0;NS=1;NUMALT=1;ODDS=115.509;PAIRED=0.9875;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=2649;QR=0;RO=0;RPL=41;RPP=3.11887;RPPR=0;RPR=39;RUN=1;SAF=38;SAP=3.44459;SAR=42;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:80:0,80:0:0:80:2649:-237.385,-24.0824,0 NC_002945.4 340092 . G C 2407.91 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=79;CIGAR=1X;DP=80;DPB=80;DPRA=0;EPP=17.5509;EPPR=0;GTI=0;LEN=1;MEANALT=2;MQ=58.8228;MQMR=0;NS=1;NUMALT=1;ODDS=114.122;PAIRED=0.987342;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=2733;QR=0;RO=0;RPL=42;RPP=3.69747;RPPR=0;RPR=37;RUN=1;SAF=37;SAP=3.69747;SAR=42;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:80:0,79:0:0:79:2733:-245.528,-23.7814,0 NC_002945.4 340097 . C G 2471.31 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=83;CIGAR=1X;DP=83;DPB=83;DPRA=0;EPP=16.8502;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQ=58.4578;MQMR=0;NS=1;NUMALT=1;ODDS=119.668;PAIRED=0.987952;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=2802;QR=0;RO=0;RPL=43;RPP=3.24576;RPPR=0;RPR=40;RUN=1;SAF=40;SAP=3.24576;SAR=43;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:83:0,83:0:0:83:2802:-251.74,-24.9855,0 NC_002945.4 362818 . T C 400.106 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=15;CIGAR=1X;DP=15;DPB=15;DPRA=0;EPP=6.62942;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQ=58.6667;MQMR=0;NS=1;NUMALT=1;ODDS=25.3996;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=483;QR=0;RO=0;RPL=7;RPP=3.15506;RPPR=0;RPR=8;RUN=1;SAF=3;SAP=14.7363;SAR=12;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:15:0,15:0:0:15:483:-43.6129,-4.51545,0 NC_002945.4 364560 . A G 6594.02 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=209;CIGAR=1X;DP=209;DPB=209;DPRA=0;EPP=14.3248;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQ=59.9234;MQMR=0;NS=1;NUMALT=1;ODDS=294.341;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=7388;QR=0;RO=0;RPL=116;RPP=8.50651;RPPR=0;RPR=93;RUN=1;SAF=103;SAP=3.10381;SAR=106;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:209:0,209:0:0:209:7388:-664.866,-62.9153,0 NC_002945.4 364804 . T C 5622.3 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=193;CIGAR=1X;DP=193;DPB=193;DPRA=0;EPP=7.97206;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQ=60;MQMR=0;NS=1;NUMALT=1;ODDS=272.16;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=6321;QR=0;RO=0;RPL=119;RPP=25.7939;RPPR=0;RPR=74;RUN=1;SAF=90;SAP=4.91174;SAR=103;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:193:0,193:0:0:193:6321:-568.925,-58.0988,0 NC_002945.4 366022 . T C 4678.56 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=159;CIGAR=1X;DP=159;DPB=159;DPRA=0;EPP=3.35173;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQ=60;MQMR=0;NS=1;NUMALT=1;ODDS=225.026;PAIRED=0.987421;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=5277;QR=0;RO=0;RPL=103;RPP=33.1787;RPPR=0;RPR=56;RUN=1;SAF=89;SAP=7.9405;SAR=70;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:159:0,159:0:0:159:5277:-475.022,-47.8638,0 NC_002945.4 402148 . G T 85.8237 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=4;CIGAR=1X;DP=4;DPB=4;DPRA=0;EPP=11.6962;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQ=40;MQMR=0;NS=1;NUMALT=1;ODDS=10.1503;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=136;QR=0;RO=0;RPL=0;RPP=11.6962;RPPR=0;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:4:0,4:0:0:4:136:-12.1947,-1.20412,0 NC_002945.4 407246 . C G 2433.98 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=91;CIGAR=1X;DP=93;DPB=93;DPRA=0;EPP=7.04303;EPPR=0;GTI=0;LEN=1;MEANALT=2;MQ=60;MQMR=0;NS=1;NUMALT=1;ODDS=130.758;PAIRED=0.989011;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=2860;QR=0;RO=0;RPL=42;RPP=4.17955;RPPR=0;RPR=49;RUN=1;SAF=14;SAP=97.7199;SAR=77;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:93:0,91:0:0:91:2860:-257.436,-27.3937,0 NC_002945.4 430077 . C T 6487.12 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=210;CIGAR=1X;DP=211;DPB=211;DPRA=0;EPP=3.05166;EPPR=0;GTI=0;LEN=1;MEANALT=2;MQ=60;MQMR=0;NS=1;NUMALT=1;ODDS=295.727;PAIRED=0.995238;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=7257;QR=0;RO=0;RPL=114;RPP=6.36057;RPPR=0;RPR=96;RUN=1;SAF=110;SAP=4.04433;SAR=100;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:211:0,210:0:0:210:7257:-652.932,-63.2163,0 NC_002945.4 438482 . C G 2522.44 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=88;CIGAR=1X;DP=89;DPB=89;DPRA=0;EPP=19.6912;EPPR=0;GTI=0;LEN=1;MEANALT=2;MQ=60;MQMR=0;NS=1;NUMALT=1;ODDS=126.599;PAIRED=0.977273;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=2910;QR=0;RO=0;RPL=27;RPP=31.5356;RPPR=0;RPR=61;RUN=1;SAF=30;SAP=22.3561;SAR=58;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:89:0,88:0:0:88:2910:-261.971,-26.4906,0 NC_002945.4 441762 . C T 3223.01 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=114;CIGAR=1X;DP=118;DPB=118;DPRA=0;EPP=3.08649;EPPR=5.18177;GTI=0;LEN=1;MEANALT=2;MQ=60;MQMR=60;NS=1;NUMALT=1;ODDS=158.877;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3640;QR=12;RO=1;RPL=71;RPP=17.9439;RPPR=5.18177;RPR=43;RUN=1;SAF=51;SAP=5.75321;SAR=63;SRF=1;SRP=5.18177;SRR=0;TYPE=snp;technology.ILLUMINA=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:118:1,114:1:12:114:3640:-326.556,-33.5385,0 NC_002945.4 449922 . T C 4823.83 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=160;CIGAR=1X;DP=161;DPB=161;DPRA=0;EPP=4.36747;EPPR=5.18177;GTI=0;LEN=1;MEANALT=1;MQ=59.5938;MQMR=60;NS=1;NUMALT=1;ODDS=221.573;PAIRED=0.98125;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=5447;QR=14;RO=1;RPL=55;RPP=36.9396;RPPR=5.18177;RPR=105;RUN=1;SAF=76;SAP=3.87889;SAR=84;SRF=1;SRP=5.18177;SRR=0;TYPE=snp;technology.ILLUMINA=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:161:1,160:1:14:160:5447:-488.732,-47.0658,0 NC_002945.4 452398 . G A 5682.95 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=191;CIGAR=1X;DP=193;DPB=193;DPRA=0;EPP=8.02401;EPPR=0;GTI=0;LEN=1;MEANALT=2;MQ=60;MQMR=0;NS=1;NUMALT=1;ODDS=269.387;PAIRED=0.994764;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=6375;QR=0;RO=0;RPL=108;RPP=10.1159;RPPR=0;RPR=83;RUN=1;SAF=86;SAP=7.1145;SAR=105;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:193:0,191:0:0:191:6375:-573.63,-57.4967,0 NC_002945.4 460722 . G A 4946.91 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=165;CIGAR=1X;DP=166;DPB=166;DPRA=0;EPP=11.2356;EPPR=5.18177;GTI=0;LEN=1;MEANALT=1;MQ=60;MQMR=60;NS=1;NUMALT=1;ODDS=225.021;PAIRED=0.981818;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=5569;QR=29;RO=1;RPL=87;RPP=4.0763;RPPR=5.18177;RPR=78;RUN=1;SAF=85;SAP=3.33931;SAR=80;SRF=0;SRP=5.18177;SRR=1;TYPE=snp;technology.ILLUMINA=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:166:1,165:1:29:165:5569:-498.37,-47.0713,0 NC_002945.4 467343 . C T 4694.23 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=159;CIGAR=1X;DP=163;DPB=163;DPRA=0;EPP=5.31834;EPPR=5.18177;GTI=0;LEN=1;MEANALT=2;MQ=60;MQMR=60;NS=1;NUMALT=1;ODDS=220.934;PAIRED=0.981132;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=5264;QR=12;RO=1;RPL=80;RPP=3.02396;RPPR=5.18177;RPR=79;RUN=1;SAF=72;SAP=6.08314;SAR=87;SRF=1;SRP=5.18177;SRR=0;TYPE=snp;technology.ILLUMINA=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:163:1,159:1:12:159:5264:-472.655,-47.0865,0 NC_002945.4 467402 . C A 5465.13 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=182;CIGAR=1X;DP=183;DPB=183;DPRA=0;EPP=3.43982;EPPR=5.18177;GTI=0;LEN=1;MEANALT=1;MQ=60;MQMR=60;NS=1;NUMALT=1;ODDS=249.181;PAIRED=0.978022;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=6135;QR=26;RO=1;RPL=87;RPP=3.77389;RPPR=5.18177;RPR=95;RUN=1;SAF=85;SAP=4.72839;SAR=97;SRF=1;SRP=5.18177;SRR=0;TYPE=snp;technology.ILLUMINA=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:183:1,182:1:26:182:6135:-549.586,-52.4887,0 NC_002945.4 479644 . G A 6502.05 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=213;CIGAR=1X;DP=213;DPB=213;DPRA=0;EPP=3.50984;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQ=60;MQMR=0;NS=1;NUMALT=1;ODDS=299.886;PAIRED=0.971831;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=7282;QR=0;RO=0;RPL=118;RPP=8.4033;RPPR=0;RPR=95;RUN=1;SAF=93;SAP=10.4422;SAR=120;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:213:0,213:0:0:213:7282:-655.323,-64.1194,0 NC_002945.4 483845 . T C 6908.05 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=226;CIGAR=1X;DP=226;DPB=226;DPRA=0;EPP=4.39389;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQ=59.6947;MQMR=0;NS=1;NUMALT=1;ODDS=317.908;PAIRED=0.986726;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=7736;QR=0;RO=0;RPL=115;RPP=3.16403;RPPR=0;RPR=111;RUN=1;SAF=110;SAP=3.3562;SAR=116;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:226:0,226:0:0:226:7736:-694.819,-68.0328,0 NC_002945.4 485584 . G A 6925.43 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=219;CIGAR=1X;DP=219;DPB=219;DPRA=0;EPP=3.09954;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQ=60;MQMR=0;NS=1;NUMALT=1;ODDS=308.204;PAIRED=0.986301;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=7743;QR=0;RO=0;RPL=119;RPP=6.58976;RPPR=0;RPR=100;RUN=1;SAF=113;SAP=3.49615;SAR=106;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:219:0,219:0:0:219:7743:-696.763,-65.9256,0 NC_002945.4 488897 . G T 3635.93 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=139;CIGAR=1X;DP=147;DPB=147;DPRA=0;EPP=3.1509;EPPR=10.7656;GTI=0;LEN=1;MEANALT=2;MQ=60;MQMR=60;NS=1;NUMALT=1;ODDS=165.544;PAIRED=0.985612;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4207;QR=110;RO=7;RPL=43;RPP=46.8928;RPPR=5.80219;RPR=96;RUN=1;SAF=78;SAP=7.52509;SAR=61;SRF=6;SRP=10.7656;SRR=1;TYPE=snp;technology.ILLUMINA=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:147:7,139:7:110:139:4207:-368.725,-34.0199,0 NC_002945.4 490878 . G A 7054.95 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=222;CIGAR=1X;DP=223;DPB=223;DPRA=0;EPP=5.51434;EPPR=0;GTI=0;LEN=1;MEANALT=2;MQ=60;MQMR=0;NS=1;NUMALT=1;ODDS=312.363;PAIRED=0.977477;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=7893;QR=0;RO=0;RPL=99;RPP=8.64439;RPPR=0;RPR=123;RUN=1;SAF=108;SAP=3.36243;SAR=114;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:223:0,222:0:0:222:7893:-710.157,-66.8287,0 NC_002945.4 507929 . T C 5517.08 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=179;CIGAR=1X;DP=179;DPB=179;DPRA=0;EPP=3.02243;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQ=60;MQMR=0;NS=1;NUMALT=1;ODDS=252.752;PAIRED=0.977654;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=6172;QR=0;RO=0;RPL=86;RPP=3.60473;RPPR=0;RPR=93;RUN=1;SAF=92;SAP=3.31358;SAR=87;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:179:0,179:0:0:179:6172:-555.473,-53.8844,0 NC_002945.4 518522 . C T 5022.35 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=170;CIGAR=1X;DP=175;DPB=175;DPRA=0;EPP=3.8278;EPPR=9.52472;GTI=0;LEN=1;MEANALT=2;MQ=60;MQMR=60;NS=1;NUMALT=1;ODDS=222.502;PAIRED=0.994118;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=5690;QR=59;RO=3;RPL=64;RPP=25.5425;RPPR=3.73412;RPR=106;RUN=1;SAF=91;SAP=4.84966;SAR=79;SRF=2;SRP=3.73412;SRR=1;TYPE=snp;technology.ILLUMINA=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:175:3,170:3:59:170:5690:-506.649,-46.7265,0 NC_002945.4 519412 . T C 2988.47 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=100;CIGAR=1X;DP=100;DPB=100;DPRA=0;EPP=4.40004;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQ=60;MQMR=0;NS=1;NUMALT=1;ODDS=143.235;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=3388;QR=0;RO=0;RPL=34;RPP=25.2462;RPPR=0;RPR=66;RUN=1;SAF=58;SAP=8.56927;SAR=42;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:100:0,100:0:0:100:3388:-305.075,-30.103,0 NC_002945.4 541571 . T C 4690.54 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=154;CIGAR=1X;DP=154;DPB=154;DPRA=0;EPP=15.7007;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQ=60;MQMR=0;NS=1;NUMALT=1;ODDS=218.095;PAIRED=0.993506;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=5283;QR=0;RO=0;RPL=60;RPP=19.3104;RPPR=0;RPR=94;RUN=1;SAF=78;SAP=3.0667;SAR=76;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:154:0,154:0:0:154:5283:-475.539,-46.3586,0 NC_002945.4 544180 . C T 6381.36 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=214;CIGAR=1X;DP=218;DPB=218;DPRA=0;EPP=4.02501;EPPR=0;GTI=0;LEN=1;MEANALT=3;MQ=60;MQMR=0;NS=1;NUMALT=1;ODDS=301.272;PAIRED=0.990654;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=7162;QR=0;RO=0;RPL=131;RPP=26.3891;RPPR=0;RPR=83;RUN=1;SAF=103;SAP=3.65971;SAR=111;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:218:0,214:0:0:214:7162:-644.439,-64.4204,0 NC_002945.4 577068 . G T 3066.54 . AB=0.881481;ABP=173.656;AC=1;AF=0.5;AN=2;AO=119;CIGAR=1X;DP=135;DPB=135;DPRA=0;EPP=9.59771;EPPR=4.31318;GTI=0;LEN=1;MEANALT=2;MQ=59.8487;MQMR=60;NS=1;NUMALT=1;ODDS=61.7924;PAIRED=0.991597;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3865;QR=471;RO=15;RPL=63;RPP=3.90444;RPPR=35.5824;RPR=56;RUN=1;SAF=50;SAP=9.59771;SAR=69;SRF=9;SRP=4.31318;SRR=6;TYPE=snp;technology.ILLUMINA=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:135:15,119:15:471:119:3865:-307.53,0,-2.2127 NC_002945.4 598704 . C G 6668.19 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=222;CIGAR=1X;DP=222;DPB=222;DPRA=0;EPP=27.4638;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQ=60;MQMR=0;NS=1;NUMALT=1;ODDS=312.363;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=7554;QR=0;RO=0;RPL=70;RPP=68.7805;RPPR=0;RPR=152;RUN=1;SAF=112;SAP=3.04943;SAR=110;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:222:0,222:0:0:222:7554:-679.797,-66.8287,0 NC_002945.4 600207 . T C 6781.53 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=217;CIGAR=1X;DP=217;DPB=217;DPRA=0;EPP=8.30389;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQ=59.9724;MQMR=0;NS=1;NUMALT=1;ODDS=305.431;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=7591;QR=0;RO=0;RPL=96;RPP=9.26454;RPPR=0;RPR=121;RUN=1;SAF=110;SAP=3.10036;SAR=107;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:217:0,217:0:0:217:7591:-683.114,-65.3235,0 NC_002945.4 608835 . T C 209.35299999999998 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=11;CIGAR=1X;DP=12;DPB=12;DPRA=0;EPP=19.0002;EPPR=0;GTI=0;LEN=1;MEANALT=2;MQ=34.8182;MQMR=0;NS=1;NUMALT=1;ODDS=19.8544;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=377;QR=0;RO=0;RPL=1;RPP=19.0002;RPPR=0;RPR=10;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:12:0,11:0:0:11:377:-28.7865,-3.31133,0 NC_002945.4 611077 . A G 6633.15 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=225;CIGAR=1X;DP=230;DPB=230;DPRA=0;EPP=3.4832;EPPR=7.35324;GTI=0;LEN=1;MEANALT=3;MQ=59.96;MQMR=60;NS=1;NUMALT=1;ODDS=308.327;PAIRED=0.991111;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=7440;QR=24;RO=2;RPL=100;RPP=9.04217;RPPR=7.35324;RPR=125;RUN=1;SAF=131;SAP=16.2225;SAR=94;SRF=0;SRP=7.35324;SRR=2;TYPE=snp;technology.ILLUMINA=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:230:2,225:2:24:225:7440:-667.303,-66.1738,0 NC_002945.4 622386 . C G 6094.46 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=199;CIGAR=1X;DP=200;DPB=200;DPRA=0;EPP=3.89417;EPPR=0;GTI=0;LEN=1;MEANALT=2;MQ=60;MQMR=0;NS=1;NUMALT=1;ODDS=280.478;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=6828;QR=0;RO=0;RPL=90;RPP=6.9495;RPPR=0;RPR=109;RUN=1;SAF=112;SAP=9.83025;SAR=87;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:200:0,199:0:0:199:6828:-614.351,-59.905,0