# HG changeset patch # User greg # Date 1632183696 0 # Node ID cd636b0e4f95a80f0672694952897aaefcdfd871 # Parent 544b2ed99a9a0fc2b79883b16646fd0e9cec0fd1 "planemo upload for repository https://github.com/gregvonkuster/galaxy_tools/tree/master/tools/sequence_analysis/vsnp/vsnp_get_snps commit cab8ee43e902a3ae7b0fd6b06842c4b5c221af25" diff -r 544b2ed99a9a -r cd636b0e4f95 vsnp_get_snps.xml --- a/vsnp_get_snps.xml Wed Aug 25 17:17:37 2021 +0000 +++ b/vsnp_get_snps.xml Tue Sep 21 00:21:36 2021 +0000 @@ -28,7 +28,7 @@ #if str($dbkey) == '?': #set dbkey = $i.metadata.dbkey #else if str($dbkey) != $i.metadata.dbkey: - >&2 echo "The dbkeys associated with the zero coverage VCF files with SNPs found in closely related isolate groups are not unique" && exit 1 + >&2 echo "The dbkeys associated with the zero coverage VCF files with SNPs found in closely related isolate groups are not unique, check ${i.name}" && exit 1 #end if #set vcf_identifier = re.sub('[^\s\w\-]', '_', str($i.element_identifier)) ln -s '${i}' '$input_vcf_dir/${vcf_identifier}' &&