Mercurial > repos > greg > vsnp_statistics

comparison vsnp_statistics.xml @ 14:ce1f889b3340 draft

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author greg
date Mon, 02 Aug 2021 21:13:19 +0000
parents 1becb6606626
children 44b07199be73
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13:3c4dba2b5b14 14:ce1f889b3340
24 #else: 24 #else:
25 #set read2 = None 25 #set read2 = None
26 #end if 26 #end if
27 #else: 27 #else:
28 #set read1 = $input_type_cond.reads_collection['forward'] 28 #set read1 = $input_type_cond.reads_collection['forward']
29 #set read1_identifier = re.sub('[^\s\w\-]', '_', str($read1.name)) 29 #set read1_identifier = re.sub('[^\s\w\-]', '_', str($read1.element_identifier))
30 ln -s '${read1}' '${read1_identifier}' && 30 ln -s '${read1}' '${read1_identifier}' &&
31 #set read2 = $input_type_cond.reads_collection['reverse'] 31 #set read2 = $input_type_cond.reads_collection['reverse']
32 #set read2_identifier = re.sub('[^\s\w\-]', '_', str($read2.name)) 32 #set read2_identifier = re.sub('[^\s\w\-]', '_', str($read2.element_identifier))
33 ln -s '${read2}' '${read2_identifier}' && 33 ln -s '${read2}' '${read2_identifier}' &&
34 #end if 34 #end if
35 35
36 python '$__tool_directory__/vsnp_statistics.py' 36 python '$__tool_directory__/vsnp_statistics.py'
37 --read1 '${read1_identifier}' 37 --read1 '${read1_identifier}'