Mercurial > repos > gregor.m > spyboat

comparison run_tests.sh @ 3:4d7f30a7e2f6 draft

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"planemo upload commit d070f1ba04a5141a65487f45b29c22767639e44b"
author gregor.m
date Tue, 24 Nov 2020 13:06:26 +0000
parents 1d62de03829d
children a4c6fcf2c456
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2:c59d1373230e 3:4d7f30a7e2f6
1 #!/usr/bin/env bash 1 #!/usr/bin/env bash
2 2
3 # example command, minimal options: no detrending,
4 # no rescaling, no masking, no amplitude norm., no blurring
5 3
6 INPUT_PATH='./test-data/test-movie.tif' 4 INPUT_PATH='./test-data/test-movie.tif'
7 # INPUT_PATH='./test-data/SCN_L20_Evans2013-half.tif'
8 SCRIPT_PATH='.' 5 SCRIPT_PATH='.'
9 6
10 python3 $SCRIPT_PATH/cl_wrapper.py --input_path $INPUT_PATH --phase_out phase_twosines_out.tif --period_out period_twosines_out.tif --power_out power_twosines_out.tif --amplitude_out amplitude_twosines_out.tif --dt .5 --Tmin 20 --Tmax 30 --nT 200 --ncpu 6 --masking dynamic --preprocessed_out preproc_two_sines.tif --gauss_sigma 3 --rescale 50 --Tcutoff 40 --masking fixed --mask_frame 10 --mask_thresh 8 7 python3 $SCRIPT_PATH/spyboat_cli.py --input_path $INPUT_PATH --phase_out phase_twosines_out.tif --period_out period_twosines_out.tif --power_out power_twosines_out.tif --amplitude_out amplitude_twosines_out.tif --dt 1 --Tmin 2 --Tmax 30 --nT 200 --ncpu 6 --masking dynamic --preprocessed_out preproc_two_sines.tif --gauss_sigma 3 --rescale 80 --Tcutoff 40 --masking static --mask_frame 10 --mask_thresh 8
11 8
12 printf "\n" 9 printf "\n"
13 # printf "\nError examples:\n" 10 # printf "\nError examples:\n"
14 11
15 # python3 $SCRIPT_PATH/cl_wrapper.py --input_path $INPUT_PATH --phase_out phase_twosines_out.tif --period_out period_twosines_out.tif --power_out power_twosines_out.tif --amplitude_out amplitude_twosines_out.tif --dt 2. --Tmin 20 --Tmax 30 --nT 200 --ncpu 6 --save_input True --masking fixed 12 # python3 $SCRIPT_PATH/cl_wrapper.py --input_path $INPUT_PATH --phase_out phase_twosines_out.tif --period_out period_twosines_out.tif --power_out power_twosines_out.tif --amplitude_out amplitude_twosines_out.tif --dt 2. --Tmin 20 --Tmax 30 --nT 200 --ncpu 6 --save_input True --masking fixed