Mercurial > repos > gregor.m > spyboat

comparison run_tests.sh @ 5:d5a4180410c4 draft default tip

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"planemo upload commit 7bc843096b70fe1c8fc149e69d8f87fceac4eb3b"
author gregor.m
date Sat, 28 Nov 2020 18:50:09 +0000
parents a4c6fcf2c456
children
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4:a4c6fcf2c456 5:d5a4180410c4
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4 INPUT_PATH='./test-data/test-movie.tif' 4 INPUT_PATH='./test-data/test-movie.tif'
5 SCRIPT_PATH='.' 5 SCRIPT_PATH='.'
6 6
7 python3 $SCRIPT_PATH/spyboat_cli.py --input_path $INPUT_PATH --phase_out phase_test-movie.tif --period_out period_test-movie.tif --power_out power_test-movie.tif --amplitude_out amplitude_test-movie.tif --dt 1 --Tmin 20 --Tmax 30 --nT 200 --ncpu 6 --masking dynamic --preprocessed_out preproc_two_sines.tif --gauss_sigma 2 --rescale 80 --Tcutoff 40 --masking static --mask_frame 10 --mask_thresh 300 7 # set to galaxy defaults!!
8 python3 $SCRIPT_PATH/spyboat_cli.py --input_path $INPUT_PATH --phase_out phase_out.tif --period_out period_out.tif --dt 1 --Tmin 20 --Tmax 30 --nT 150 --ncpu 6 --Tcutoff 40
9
10 # additional paramters
11 #--masking static --mask_frame 10 --mask_thresh 300 --rescale 80 --gauss_sigma 1
8 12
9 printf "\n" 13 printf "\n"
10 # printf "\nError examples:\n" 14 # printf "\nError examples:\n"
11 15