annotate charts.xml @ 3:65f4abe945aa draft

Uploaded
author guerler
date Thu, 17 Apr 2014 11:19:35 -0400
parents f2d42848d165
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
1
f2d42848d165 Uploaded
guerler
parents:
diff changeset
1 <tool id="charts" name="Charts" version="1.0.0">
f2d42848d165 Uploaded
guerler
parents:
diff changeset
2 <hidden>True</hidden>
f2d42848d165 Uploaded
guerler
parents:
diff changeset
3 <description>wrapper for R</description>
f2d42848d165 Uploaded
guerler
parents:
diff changeset
4 <requirements>
f2d42848d165 Uploaded
guerler
parents:
diff changeset
5 <requirement type="set_environment">SCRIPT_PATH</requirement>
f2d42848d165 Uploaded
guerler
parents:
diff changeset
6 <requirement type="package" version="2.15.0">R</requirement>
f2d42848d165 Uploaded
guerler
parents:
diff changeset
7 </requirements>
f2d42848d165 Uploaded
guerler
parents:
diff changeset
8 <command>Rscript \$SCRIPT_PATH/charts.r -w \$SCRIPT_PATH/ -m ${module} -i ${input} -c '${columns}' -s '${settings}' -o ${output}
f2d42848d165 Uploaded
guerler
parents:
diff changeset
9 </command>
f2d42848d165 Uploaded
guerler
parents:
diff changeset
10 <inputs>
f2d42848d165 Uploaded
guerler
parents:
diff changeset
11 <param name="input" type="data" label="Input dataset" format="tabular" />
f2d42848d165 Uploaded
guerler
parents:
diff changeset
12 <param name="module" type="select" label="R-script">
f2d42848d165 Uploaded
guerler
parents:
diff changeset
13 <option value="histogram">Histogram</option>
f2d42848d165 Uploaded
guerler
parents:
diff changeset
14 <option value="boxplot">Box plot</option>
f2d42848d165 Uploaded
guerler
parents:
diff changeset
15 </param>
f2d42848d165 Uploaded
guerler
parents:
diff changeset
16 <param name="columns" type="text" label="Columns string (i.e key1: column, key2: column)" value="column: 2"/>
f2d42848d165 Uploaded
guerler
parents:
diff changeset
17 <param name="settings" type="text" label="Options string (i.e data_limit: 1000)" value=""/>
f2d42848d165 Uploaded
guerler
parents:
diff changeset
18 </inputs>
f2d42848d165 Uploaded
guerler
parents:
diff changeset
19 <outputs>
f2d42848d165 Uploaded
guerler
parents:
diff changeset
20 <data name="output" format="tabular" />
f2d42848d165 Uploaded
guerler
parents:
diff changeset
21 </outputs>
f2d42848d165 Uploaded
guerler
parents:
diff changeset
22 </tool>