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1 <tool id="charts" name="Charts" version="1.0.0">
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2 <hidden>True</hidden>
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3 <description>wrapper for R</description>
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4 <requirements>
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5 <requirement type="set_environment">SCRIPT_PATH</requirement>
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6 <requirement type="package" version="2.15.0">R</requirement>
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7 </requirements>
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8 <command>Rscript \$SCRIPT_PATH/charts.r -w \$SCRIPT_PATH/ -m ${module} -i ${input} -c '${columns}' -s '${settings}' -o ${output}
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9 </command>
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10 <inputs>
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11 <param name="input" type="data" label="Input dataset" format="tabular" />
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12 <param name="module" type="select" label="R-script">
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13 <option value="histogram">Histogram</option>
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14 <option value="boxplot">Box plot</option>
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15 </param>
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16 <param name="columns" type="text" label="Columns string (i.e key1: column, key2: column)" value="column: 2"/>
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17 <param name="settings" type="text" label="Options string (i.e data_limit: 1000)" value=""/>
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18 </inputs>
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19 <outputs>
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20 <data name="output" format="tabular" />
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21 </outputs>
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22 </tool> |
