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comparison charts.xml @ 33:83555a70c34c draft

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author guerler
date Fri, 09 May 2014 00:58:29 -0400
parents 3e937e69feb8
children 264ef6e5c48e
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32:680a819f4a4c 33:83555a70c34c
8 <command>Rscript \$SCRIPT_PATH/charts.r -w \$SCRIPT_PATH/ -m ${module} -i ${input} -c '${columns}' -s '${settings}' -o ${output} 8 <command>Rscript \$SCRIPT_PATH/charts.r -w \$SCRIPT_PATH/ -m ${module} -i ${input} -c '${columns}' -s '${settings}' -o ${output}
9 </command> 9 </command>
10 <inputs> 10 <inputs>
11 <param name="input" type="data" label="Input dataset" format="tabular" /> 11 <param name="input" type="data" label="Input dataset" format="tabular" />
12 <param name="module" type="select" label="R-script"> 12 <param name="module" type="select" label="R-script">
13 <option value="histogram">Histogram</option> 13 <option value="boxplot">boxplot</option>
14 <option value="boxplot">Box plot</option> 14 <option value="heatmap">heatmap</option>
15 <option value="histogram">histogram</option>
16 <option value="histogramdiscrete">histogramdiscrete</option>
15 </param> 17 </param>
16 <param name="columns" type="text" label="Columns string (i.e key1: column, key2: column)" value="column: 2"/> 18 <param name="columns" type="text" label="Columns string (i.e key1: column, key2: column)" value="column: 2"/>
17 <param name="settings" type="text" label="Options string (i.e data_limit: 1000)" value=""/> 19 <param name="settings" type="text" label="Options string (i.e data_limit: 1000)" value=""/>
18 </inputs> 20 </inputs>
19 <outputs> 21 <outputs>
46 <param name="module" value="boxplot" /> 48 <param name="module" value="boxplot" />
47 <param name="columns" value="key1: 2, key2: 3, key3: 4" /> 49 <param name="columns" value="key1: 2, key2: 3, key3: 4" />
48 <param name="settings" value="" /> 50 <param name="settings" value="" />
49 <output name="output" file="boxplot.001.txt" lines_diff="2"/> 51 <output name="output" file="boxplot.001.txt" lines_diff="2"/>
50 </test> 52 </test>
53 <test>
54 <param name="input" value="tabular_matrix.txt" />
55 <param name="module" value="histogramdiscrete" />
56 <param name="columns" value="key1: 1, key2: 2, key3: 3" />
57 <param name="settings" value="" />
58 <output name="output" file="histogramdiscrete.000.txt" lines_diff="2"/>
59 </test>
60 <test>
61 <param name="input" value="tabular_matrix.txt" />
62 <param name="module" value="heatmap" />
63 <param name="columns" value="key1: 1, key2: 2, key3: 3" />
64 <param name="settings" value="" />
65 <output name="output" file="heatmap.000.txt" lines_diff="2"/>
66 </test>
51 </tests> 67 </tests>
52 </tool> 68 </tool>