Mercurial > repos > guerler > dbkit

annotate dbkit_extract.py @ 4:58de7c3926cc draft

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"planemo upload commit c6112b37070456c582e915244105c4c63f4cebdb"
author guerler
date Mon, 25 Jan 2021 04:23:15 +0000
parents 03e124ff7e26
children
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1 #! /usr/bin/env python3
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2 import argparse
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4 from dbkit_package.DBKit import DBKit, writeEntry
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7 def main(args):
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8 logFile = open(args.log, "w")
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9 outputIndex = args.outputindex
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10 outputDatabase = args.outputdatabase
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11 entries = list()
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12 with open(args.list, "r") as f:
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13 for line in f:
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14 name = line.split()[0]
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15 entries.append(name)
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16 logFile.write("Detected %s entries.\n" % len(entries))
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17 fileName = "temp.dat"
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18 count = 0
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19 dbkit = DBKit(args.index, args.database)
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20 for entry in sorted(entries):
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21 success = dbkit.createFile(entry, fileName)
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22 if success:
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23 writeEntry(entry, fileName, outputIndex, outputDatabase)
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24 count = count + 1
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25 else:
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26 logFile.write("Entry %s not found.\n" % entry)
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27 logFile.write("Extracted %s entries.\n" % count)
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28 logFile.close()
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31 if __name__ == "__main__":
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32 parser = argparse.ArgumentParser(description='DBKit - Merge database pair.')
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33 parser.add_argument('-l', '--list', help='List of entries to be extracted', required=True)
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34 parser.add_argument('-i', '--index', help='Database Index file (ffindex)', required=True)
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35 parser.add_argument('-d', '--database', help='Database Data file (ffdata)', required=True)
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36 parser.add_argument('-oi', '--outputindex', help='Output Index file', required=True)
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37 parser.add_argument('-od', '--outputdatabase', help='Output Data file', required=True)
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38 parser.add_argument('-g', '--log', help='Log file', required=True)
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39 args = parser.parse_args()
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40 main(args)