Mercurial > repos > guerler > dbkit

annotate dbkit_merge.xml @ 4:58de7c3926cc draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
"planemo upload commit c6112b37070456c582e915244105c4c63f4cebdb"
author guerler
date Mon, 25 Jan 2021 04:23:15 +0000
parents 81c7d4668a7e
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
2
81c7d4668a7e "planemo upload commit bd03b7888eab0b010acfc3affd38bf4d4e2bb1ef-dirty"
guerler
parents:
diff changeset
1 <tool id="dbkit_merge" name="DBKit Merge" version="0.1.1" python_template_version="3.5" license="MIT">
81c7d4668a7e "planemo upload commit bd03b7888eab0b010acfc3affd38bf4d4e2bb1ef-dirty"
guerler
parents:
diff changeset
2 <description>two databases</description>
81c7d4668a7e "planemo upload commit bd03b7888eab0b010acfc3affd38bf4d4e2bb1ef-dirty"
guerler
parents:
diff changeset
3 <command detect_errors="exit_code"><![CDATA[
81c7d4668a7e "planemo upload commit bd03b7888eab0b010acfc3affd38bf4d4e2bb1ef-dirty"
guerler
parents:
diff changeset
4 python3 '$__tool_directory__/dbkit_merge.py' -fi '$firstindex' -fd '$firstdata' -si '$secondindex' -sd '$seconddata' -oi '$outindex' -od '$outdata' -log '$logfile'
81c7d4668a7e "planemo upload commit bd03b7888eab0b010acfc3affd38bf4d4e2bb1ef-dirty"
guerler
parents:
diff changeset
5 ]]></command>
81c7d4668a7e "planemo upload commit bd03b7888eab0b010acfc3affd38bf4d4e2bb1ef-dirty"
guerler
parents:
diff changeset
6 <inputs>
81c7d4668a7e "planemo upload commit bd03b7888eab0b010acfc3affd38bf4d4e2bb1ef-dirty"
guerler
parents:
diff changeset
7 <param format="ffindex" name="firstindex" type="data" label="First Database Index" help="Select the index file of the first database (ffindex)."/>
81c7d4668a7e "planemo upload commit bd03b7888eab0b010acfc3affd38bf4d4e2bb1ef-dirty"
guerler
parents:
diff changeset
8 <param format="ffdata" name="firstdata" type="data" label="First Database Content" help="Select the data file of the first database (ffdata)."/>
81c7d4668a7e "planemo upload commit bd03b7888eab0b010acfc3affd38bf4d4e2bb1ef-dirty"
guerler
parents:
diff changeset
9 <param format="ffindex" name="secondindex" type="data" label="Second Database Index" help="Select the index file of the second database (ffindex)."/>
81c7d4668a7e "planemo upload commit bd03b7888eab0b010acfc3affd38bf4d4e2bb1ef-dirty"
guerler
parents:
diff changeset
10 <param format="ffdata" name="seconddata" type="data" label="Second Database Content" help="Select the data file of the second database (ffdata)."/>
81c7d4668a7e "planemo upload commit bd03b7888eab0b010acfc3affd38bf4d4e2bb1ef-dirty"
guerler
parents:
diff changeset
11 </inputs>
81c7d4668a7e "planemo upload commit bd03b7888eab0b010acfc3affd38bf4d4e2bb1ef-dirty"
guerler
parents:
diff changeset
12 <outputs>
81c7d4668a7e "planemo upload commit bd03b7888eab0b010acfc3affd38bf4d4e2bb1ef-dirty"
guerler
parents:
diff changeset
13 <data format="ffindex" name="outindex" label="DBKit Merged Index"/>
81c7d4668a7e "planemo upload commit bd03b7888eab0b010acfc3affd38bf4d4e2bb1ef-dirty"
guerler
parents:
diff changeset
14 <data format="ffdata" name="outdata" label="DBKit Merged Database" />
81c7d4668a7e "planemo upload commit bd03b7888eab0b010acfc3affd38bf4d4e2bb1ef-dirty"
guerler
parents:
diff changeset
15 <data format="txt" name="logfile" label="DBKit Merged Log" />
81c7d4668a7e "planemo upload commit bd03b7888eab0b010acfc3affd38bf4d4e2bb1ef-dirty"
guerler
parents:
diff changeset
16 </outputs>
81c7d4668a7e "planemo upload commit bd03b7888eab0b010acfc3affd38bf4d4e2bb1ef-dirty"
guerler
parents:
diff changeset
17 <tests>
81c7d4668a7e "planemo upload commit bd03b7888eab0b010acfc3affd38bf4d4e2bb1ef-dirty"
guerler
parents:
diff changeset
18 <test>
81c7d4668a7e "planemo upload commit bd03b7888eab0b010acfc3affd38bf4d4e2bb1ef-dirty"
guerler
parents:
diff changeset
19 <param name="firstindex" value="create/first.ffindex"/>
81c7d4668a7e "planemo upload commit bd03b7888eab0b010acfc3affd38bf4d4e2bb1ef-dirty"
guerler
parents:
diff changeset
20 <param name="firstdata" value="create/first.ffdata"/>
81c7d4668a7e "planemo upload commit bd03b7888eab0b010acfc3affd38bf4d4e2bb1ef-dirty"
guerler
parents:
diff changeset
21 <param name="secondindex" value="merge/second.ffindex"/>
81c7d4668a7e "planemo upload commit bd03b7888eab0b010acfc3affd38bf4d4e2bb1ef-dirty"
guerler
parents:
diff changeset
22 <param name="seconddata" value="merge/second.ffdata"/>
81c7d4668a7e "planemo upload commit bd03b7888eab0b010acfc3affd38bf4d4e2bb1ef-dirty"
guerler
parents:
diff changeset
23 <output name="index" file="merge/result.ffindex" />
81c7d4668a7e "planemo upload commit bd03b7888eab0b010acfc3affd38bf4d4e2bb1ef-dirty"
guerler
parents:
diff changeset
24 <output name="database" file="merge/result.ffdata" />
81c7d4668a7e "planemo upload commit bd03b7888eab0b010acfc3affd38bf4d4e2bb1ef-dirty"
guerler
parents:
diff changeset
25 </test>
81c7d4668a7e "planemo upload commit bd03b7888eab0b010acfc3affd38bf4d4e2bb1ef-dirty"
guerler
parents:
diff changeset
26 </tests>
81c7d4668a7e "planemo upload commit bd03b7888eab0b010acfc3affd38bf4d4e2bb1ef-dirty"
guerler
parents:
diff changeset
27 <help><![CDATA[
81c7d4668a7e "planemo upload commit bd03b7888eab0b010acfc3affd38bf4d4e2bb1ef-dirty"
guerler
parents:
diff changeset
28 This database creation tool merges two pairs of ffindex/ffdata entries into a single ffindex/ffdata pair.
81c7d4668a7e "planemo upload commit bd03b7888eab0b010acfc3affd38bf4d4e2bb1ef-dirty"
guerler
parents:
diff changeset
29 ]]></help>
81c7d4668a7e "planemo upload commit bd03b7888eab0b010acfc3affd38bf4d4e2bb1ef-dirty"
guerler
parents:
diff changeset
30 </tool>