Mercurial > repos > guerler > dbkit

comparison dbkit_create.xml @ 1:987e55ea29b8 draft

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"planemo upload commit ce9026535c3c6da5e97366a4f0b347b0ec572dbc-dirty"
author guerler
date Thu, 26 Nov 2020 11:05:51 +0000
parents 1914107cc967
children 81c7d4668a7e
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0:1914107cc967 1:987e55ea29b8
1 <tool id="dbkit_create" name="DBKit Create" version="0.1.1" python_template_version="3.5" license="MIT"> 1 <tool id="dbkit_create" name="DBKit Create" version="0.1.1" python_template_version="3.5" license="MIT">
2 <description>database generator</description> 2 <description>database generator</description>
3 <command detect_errors="exit_code"><![CDATA[ 3 <command detect_errors="exit_code"><![CDATA[
4 mkdir temp && 4 mkdir temp &&
5 python3 '$__tool_directory__/dbkit_create.py' -l '$input' -u '$url' -t 'temp' -o '$index' -d '$database' -g '$log' -il '$advanced.idlength' -ic '$advanced.idcase' -ie '$advanced.idextension' 5 python3 '$__tool_directory__/dbkit_create.py' -l '$input' -u '$url' -o '$index' -d '$database' -g '$log' -il '$advanced.idlength' -ic '$advanced.idcase' -ie '$advanced.idextension'
6 ]]></command> 6 ]]></command>
7 <inputs> 7 <inputs>
8 <param format="tabular" name="input" type="data" label="List of Identifiers" help="Specify a list containing all entry identifiers to be downloaded."/> 8 <param format="tabular" name="input" type="data" label="List of Identifiers" help="Specify a list containing all entry identifiers to be downloaded."/>
9 <param name="url" type="text" label="URL to External Source" help="Specify the URL to the external database source."> 9 <param name="url" type="text" label="URL to External Source" help="Specify the URL to the external database source.">
10 <option value="https://files.rcsb.org/download/">https://files.rcsb.org/download/</option> 10 <option value="https://files.rcsb.org/download/">https://files.rcsb.org/download/</option>