Mercurial > repos > guerler > ffindex_dbkit_extract

annotate macros.xml @ 1:1d9fcf2157e0 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
"planemo upload commit aa6c4b1d15a2d5361d68c7eb313551bddf2700fa"
author guerler
date Mon, 29 Mar 2021 21:46:19 +0000
parents ad4b7db26523
children 953f0fd655c0
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
0
ad4b7db26523 "planemo upload commit b68cb41b1884703c4f1574b65a6408d7d0cca321"
guerler
parents:
diff changeset
1 <macros>
ad4b7db26523 "planemo upload commit b68cb41b1884703c4f1574b65a6408d7d0cca321"
guerler
parents:
diff changeset
2 <xml name="requirements">
ad4b7db26523 "planemo upload commit b68cb41b1884703c4f1574b65a6408d7d0cca321"
guerler
parents:
diff changeset
3 <requirements>
1
1d9fcf2157e0 "planemo upload commit aa6c4b1d15a2d5361d68c7eb313551bddf2700fa"
guerler
parents: 0
diff changeset
4 <requirement type="package" version="@TOOL_VERSION@">ffindex-dbkit</requirement>
0
ad4b7db26523 "planemo upload commit b68cb41b1884703c4f1574b65a6408d7d0cca321"
guerler
parents:
diff changeset
5 <yield />
ad4b7db26523 "planemo upload commit b68cb41b1884703c4f1574b65a6408d7d0cca321"
guerler
parents:
diff changeset
6 </requirements>
ad4b7db26523 "planemo upload commit b68cb41b1884703c4f1574b65a6408d7d0cca321"
guerler
parents:
diff changeset
7 </xml>
1
1d9fcf2157e0 "planemo upload commit aa6c4b1d15a2d5361d68c7eb313551bddf2700fa"
guerler
parents: 0
diff changeset
8 <token name="@TOOL_VERSION@">0.2</token>
1d9fcf2157e0 "planemo upload commit aa6c4b1d15a2d5361d68c7eb313551bddf2700fa"
guerler
parents: 0
diff changeset
9 <token name="@VERSION_SUFFIX@">0</token>
0
ad4b7db26523 "planemo upload commit b68cb41b1884703c4f1574b65a6408d7d0cca321"
guerler
parents:
diff changeset
10 <xml name="ffindex_single_inputs">
1
1d9fcf2157e0 "planemo upload commit aa6c4b1d15a2d5361d68c7eb313551bddf2700fa"
guerler
parents: 0
diff changeset
11 <param name="ffdata" type="data" format="ffdata" label="Database" help="Database Data file." />
1d9fcf2157e0 "planemo upload commit aa6c4b1d15a2d5361d68c7eb313551bddf2700fa"
guerler
parents: 0
diff changeset
12 <param name="ffindex" type="data" format="ffindex" label="Database Index" help="Database Index file." />
0
ad4b7db26523 "planemo upload commit b68cb41b1884703c4f1574b65a6408d7d0cca321"
guerler
parents:
diff changeset
13 </xml>
ad4b7db26523 "planemo upload commit b68cb41b1884703c4f1574b65a6408d7d0cca321"
guerler
parents:
diff changeset
14
ad4b7db26523 "planemo upload commit b68cb41b1884703c4f1574b65a6408d7d0cca321"
guerler
parents:
diff changeset
15 <xml name="citations">
ad4b7db26523 "planemo upload commit b68cb41b1884703c4f1574b65a6408d7d0cca321"
guerler
parents:
diff changeset
16 <citations>
ad4b7db26523 "planemo upload commit b68cb41b1884703c4f1574b65a6408d7d0cca321"
guerler
parents:
diff changeset
17 <!--citation type="doi">10.1021/ci300579r</citation-->
ad4b7db26523 "planemo upload commit b68cb41b1884703c4f1574b65a6408d7d0cca321"
guerler
parents:
diff changeset
18 </citations>
ad4b7db26523 "planemo upload commit b68cb41b1884703c4f1574b65a6408d7d0cca321"
guerler
parents:
diff changeset
19 </xml>
ad4b7db26523 "planemo upload commit b68cb41b1884703c4f1574b65a6408d7d0cca321"
guerler
parents:
diff changeset
20 <xml name="logfile">
ad4b7db26523 "planemo upload commit b68cb41b1884703c4f1574b65a6408d7d0cca321"
guerler
parents:
diff changeset
21 <param name="logfile" type="boolean" truevalue="true" falsevalue="false" checked="false" label="Output log file" />
ad4b7db26523 "planemo upload commit b68cb41b1884703c4f1574b65a6408d7d0cca321"
guerler
parents:
diff changeset
22 </xml>
ad4b7db26523 "planemo upload commit b68cb41b1884703c4f1574b65a6408d7d0cca321"
guerler
parents:
diff changeset
23
ad4b7db26523 "planemo upload commit b68cb41b1884703c4f1574b65a6408d7d0cca321"
guerler
parents:
diff changeset
24 <xml name="db_source">
ad4b7db26523 "planemo upload commit b68cb41b1884703c4f1574b65a6408d7d0cca321"
guerler
parents:
diff changeset
25 <conditional name="db_source">
ad4b7db26523 "planemo upload commit b68cb41b1884703c4f1574b65a6408d7d0cca321"
guerler
parents:
diff changeset
26 <param name="db_source_selector" type="select" label="Custom or built-in ffindex" help="Built-ins have been indexed using ffindex">
ad4b7db26523 "planemo upload commit b68cb41b1884703c4f1574b65a6408d7d0cca321"
guerler
parents:
diff changeset
27 <option value="indexed" selected="true">Use a built-in index</option>
ad4b7db26523 "planemo upload commit b68cb41b1884703c4f1574b65a6408d7d0cca321"
guerler
parents:
diff changeset
28 <option value="history">Use a ffindex from history</option>
ad4b7db26523 "planemo upload commit b68cb41b1884703c4f1574b65a6408d7d0cca321"
guerler
parents:
diff changeset
29 </param>
ad4b7db26523 "planemo upload commit b68cb41b1884703c4f1574b65a6408d7d0cca321"
guerler
parents:
diff changeset
30 <when value="indexed">
ad4b7db26523 "planemo upload commit b68cb41b1884703c4f1574b65a6408d7d0cca321"
guerler
parents:
diff changeset
31 <param name="ffindex" type="select" label="Select ffindex" help="">
ad4b7db26523 "planemo upload commit b68cb41b1884703c4f1574b65a6408d7d0cca321"
guerler
parents:
diff changeset
32 <options from_data_table="ffindex_indices">
ad4b7db26523 "planemo upload commit b68cb41b1884703c4f1574b65a6408d7d0cca321"
guerler
parents:
diff changeset
33 <filter type="sort_by" column="0" />
ad4b7db26523 "planemo upload commit b68cb41b1884703c4f1574b65a6408d7d0cca321"
guerler
parents:
diff changeset
34 <validator type="no_options" message="No indices are available" />
ad4b7db26523 "planemo upload commit b68cb41b1884703c4f1574b65a6408d7d0cca321"
guerler
parents:
diff changeset
35 </options>
ad4b7db26523 "planemo upload commit b68cb41b1884703c4f1574b65a6408d7d0cca321"
guerler
parents:
diff changeset
36 </param>
ad4b7db26523 "planemo upload commit b68cb41b1884703c4f1574b65a6408d7d0cca321"
guerler
parents:
diff changeset
37 </when>
ad4b7db26523 "planemo upload commit b68cb41b1884703c4f1574b65a6408d7d0cca321"
guerler
parents:
diff changeset
38 <when value="history">
ad4b7db26523 "planemo upload commit b68cb41b1884703c4f1574b65a6408d7d0cca321"
guerler
parents:
diff changeset
39 <expand macro="ffindex_single_inputs" />
ad4b7db26523 "planemo upload commit b68cb41b1884703c4f1574b65a6408d7d0cca321"
guerler
parents:
diff changeset
40 </when>
ad4b7db26523 "planemo upload commit b68cb41b1884703c4f1574b65a6408d7d0cca321"
guerler
parents:
diff changeset
41 </conditional>
ad4b7db26523 "planemo upload commit b68cb41b1884703c4f1574b65a6408d7d0cca321"
guerler
parents:
diff changeset
42 </xml>
ad4b7db26523 "planemo upload commit b68cb41b1884703c4f1574b65a6408d7d0cca321"
guerler
parents:
diff changeset
43 <xml name="db_source2">
ad4b7db26523 "planemo upload commit b68cb41b1884703c4f1574b65a6408d7d0cca321"
guerler
parents:
diff changeset
44 <conditional name="db_source2">
ad4b7db26523 "planemo upload commit b68cb41b1884703c4f1574b65a6408d7d0cca321"
guerler
parents:
diff changeset
45 <param name="db_source_selector" type="select" label="Custom or built-in ffindex" help="Built-ins have been indexed using ffindex">
ad4b7db26523 "planemo upload commit b68cb41b1884703c4f1574b65a6408d7d0cca321"
guerler
parents:
diff changeset
46 <option value="indexed" selected="true">Use a built-in index</option>
ad4b7db26523 "planemo upload commit b68cb41b1884703c4f1574b65a6408d7d0cca321"
guerler
parents:
diff changeset
47 <option value="history">Use a ffindex from history</option>
ad4b7db26523 "planemo upload commit b68cb41b1884703c4f1574b65a6408d7d0cca321"
guerler
parents:
diff changeset
48 </param>
ad4b7db26523 "planemo upload commit b68cb41b1884703c4f1574b65a6408d7d0cca321"
guerler
parents:
diff changeset
49 <when value="indexed">
ad4b7db26523 "planemo upload commit b68cb41b1884703c4f1574b65a6408d7d0cca321"
guerler
parents:
diff changeset
50 <param name="ffindex" type="select" label="Select ffindex" help="">
ad4b7db26523 "planemo upload commit b68cb41b1884703c4f1574b65a6408d7d0cca321"
guerler
parents:
diff changeset
51 <options from_data_table="ffindex_indices">
ad4b7db26523 "planemo upload commit b68cb41b1884703c4f1574b65a6408d7d0cca321"
guerler
parents:
diff changeset
52 <filter type="sort_by" column="0" />
ad4b7db26523 "planemo upload commit b68cb41b1884703c4f1574b65a6408d7d0cca321"
guerler
parents:
diff changeset
53 <validator type="no_options" message="No indices are available" />
ad4b7db26523 "planemo upload commit b68cb41b1884703c4f1574b65a6408d7d0cca321"
guerler
parents:
diff changeset
54 </options>
ad4b7db26523 "planemo upload commit b68cb41b1884703c4f1574b65a6408d7d0cca321"
guerler
parents:
diff changeset
55 </param>
ad4b7db26523 "planemo upload commit b68cb41b1884703c4f1574b65a6408d7d0cca321"
guerler
parents:
diff changeset
56 </when>
ad4b7db26523 "planemo upload commit b68cb41b1884703c4f1574b65a6408d7d0cca321"
guerler
parents:
diff changeset
57 <when value="history">
ad4b7db26523 "planemo upload commit b68cb41b1884703c4f1574b65a6408d7d0cca321"
guerler
parents:
diff changeset
58 <expand macro="ffindex_single_inputs" />
ad4b7db26523 "planemo upload commit b68cb41b1884703c4f1574b65a6408d7d0cca321"
guerler
parents:
diff changeset
59 </when>
ad4b7db26523 "planemo upload commit b68cb41b1884703c4f1574b65a6408d7d0cca321"
guerler
parents:
diff changeset
60 </conditional>
ad4b7db26523 "planemo upload commit b68cb41b1884703c4f1574b65a6408d7d0cca321"
guerler
parents:
diff changeset
61 </xml>
ad4b7db26523 "planemo upload commit b68cb41b1884703c4f1574b65a6408d7d0cca321"
guerler
parents:
diff changeset
62
ad4b7db26523 "planemo upload commit b68cb41b1884703c4f1574b65a6408d7d0cca321"
guerler
parents:
diff changeset
63 <token name="@db_source@">
ad4b7db26523 "planemo upload commit b68cb41b1884703c4f1574b65a6408d7d0cca321"
guerler
parents:
diff changeset
64 #if $db_source.db_source_selector == 'indexed':
ad4b7db26523 "planemo upload commit b68cb41b1884703c4f1574b65a6408d7d0cca321"
guerler
parents:
diff changeset
65 -d '${db_source.ffindex.fields.path}.ffdata'
ad4b7db26523 "planemo upload commit b68cb41b1884703c4f1574b65a6408d7d0cca321"
guerler
parents:
diff changeset
66 -i '${db_source.ffindex.fields.path}.ffindex'
ad4b7db26523 "planemo upload commit b68cb41b1884703c4f1574b65a6408d7d0cca321"
guerler
parents:
diff changeset
67 #else
ad4b7db26523 "planemo upload commit b68cb41b1884703c4f1574b65a6408d7d0cca321"
guerler
parents:
diff changeset
68 -d '$db_source.ffdata'
ad4b7db26523 "planemo upload commit b68cb41b1884703c4f1574b65a6408d7d0cca321"
guerler
parents:
diff changeset
69 -i '$db_source.ffindex'
ad4b7db26523 "planemo upload commit b68cb41b1884703c4f1574b65a6408d7d0cca321"
guerler
parents:
diff changeset
70 #end if
ad4b7db26523 "planemo upload commit b68cb41b1884703c4f1574b65a6408d7d0cca321"
guerler
parents:
diff changeset
71 </token>
ad4b7db26523 "planemo upload commit b68cb41b1884703c4f1574b65a6408d7d0cca321"
guerler
parents:
diff changeset
72 <token name="@db_source2@">
ad4b7db26523 "planemo upload commit b68cb41b1884703c4f1574b65a6408d7d0cca321"
guerler
parents:
diff changeset
73 #if $db_source.db_source_selector == 'indexed':
ad4b7db26523 "planemo upload commit b68cb41b1884703c4f1574b65a6408d7d0cca321"
guerler
parents:
diff changeset
74 -sd '${db_source.ffindex.fields.path}.ffdata'
ad4b7db26523 "planemo upload commit b68cb41b1884703c4f1574b65a6408d7d0cca321"
guerler
parents:
diff changeset
75 -si '${db_source.ffindex.fields.path}.ffindex'
ad4b7db26523 "planemo upload commit b68cb41b1884703c4f1574b65a6408d7d0cca321"
guerler
parents:
diff changeset
76 #else
ad4b7db26523 "planemo upload commit b68cb41b1884703c4f1574b65a6408d7d0cca321"
guerler
parents:
diff changeset
77 -sd '$db_source.ffdata'
ad4b7db26523 "planemo upload commit b68cb41b1884703c4f1574b65a6408d7d0cca321"
guerler
parents:
diff changeset
78 -si '$db_source.ffindex'
ad4b7db26523 "planemo upload commit b68cb41b1884703c4f1574b65a6408d7d0cca321"
guerler
parents:
diff changeset
79 #end if
ad4b7db26523 "planemo upload commit b68cb41b1884703c4f1574b65a6408d7d0cca321"
guerler
parents:
diff changeset
80 </token>
ad4b7db26523 "planemo upload commit b68cb41b1884703c4f1574b65a6408d7d0cca321"
guerler
parents:
diff changeset
81 </macros>