Mercurial > repos > guerler > ffindex_dbkit_extract
comparison macros.xml @ 0:ad4b7db26523 draft
"planemo upload commit b68cb41b1884703c4f1574b65a6408d7d0cca321"
| author | guerler |
|---|---|
| date | Tue, 23 Mar 2021 23:06:45 +0000 |
| parents | |
| children | 1d9fcf2157e0 |
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| -1:000000000000 | 0:ad4b7db26523 |
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| 1 <macros> | |
| 2 <xml name="requirements"> | |
| 3 <requirements> | |
| 4 <requirement type="package" version="0.1">ffindex-dbkit</requirement> | |
| 5 <yield /> | |
| 6 </requirements> | |
| 7 </xml> | |
| 8 <xml name="ffindex_single_inputs"> | |
| 9 <param name="ffdata" type="data" format="ffdata" label="PDB Database" help="Database Data file." /> | |
| 10 <param name="ffindex" type="data" format="ffindex" label="PDB Database Index" help="Database Index file." /> | |
| 11 </xml> | |
| 12 | |
| 13 <xml name="citations"> | |
| 14 <citations> | |
| 15 <!--citation type="doi">10.1021/ci300579r</citation--> | |
| 16 </citations> | |
| 17 </xml> | |
| 18 <xml name="logfile"> | |
| 19 <param name="logfile" type="boolean" truevalue="true" falsevalue="false" checked="false" label="Output log file" /> | |
| 20 </xml> | |
| 21 | |
| 22 <xml name="db_source"> | |
| 23 <conditional name="db_source"> | |
| 24 <param name="db_source_selector" type="select" label="Custom or built-in ffindex" help="Built-ins have been indexed using ffindex"> | |
| 25 <option value="indexed" selected="true">Use a built-in index</option> | |
| 26 <option value="history">Use a ffindex from history</option> | |
| 27 </param> | |
| 28 <when value="indexed"> | |
| 29 <param name="ffindex" type="select" label="Select ffindex" help=""> | |
| 30 <options from_data_table="ffindex_indices"> | |
| 31 <filter type="sort_by" column="0" /> | |
| 32 <validator type="no_options" message="No indices are available" /> | |
| 33 </options> | |
| 34 </param> | |
| 35 </when> | |
| 36 <when value="history"> | |
| 37 <expand macro="ffindex_single_inputs" /> | |
| 38 </when> | |
| 39 </conditional> | |
| 40 </xml> | |
| 41 <xml name="db_source2"> | |
| 42 <conditional name="db_source2"> | |
| 43 <param name="db_source_selector" type="select" label="Custom or built-in ffindex" help="Built-ins have been indexed using ffindex"> | |
| 44 <option value="indexed" selected="true">Use a built-in index</option> | |
| 45 <option value="history">Use a ffindex from history</option> | |
| 46 </param> | |
| 47 <when value="indexed"> | |
| 48 <param name="ffindex" type="select" label="Select ffindex" help=""> | |
| 49 <options from_data_table="ffindex_indices"> | |
| 50 <filter type="sort_by" column="0" /> | |
| 51 <validator type="no_options" message="No indices are available" /> | |
| 52 </options> | |
| 53 </param> | |
| 54 </when> | |
| 55 <when value="history"> | |
| 56 <expand macro="ffindex_single_inputs" /> | |
| 57 </when> | |
| 58 </conditional> | |
| 59 </xml> | |
| 60 | |
| 61 <token name="@db_source@"> | |
| 62 #if $db_source.db_source_selector == 'indexed': | |
| 63 -d '${db_source.ffindex.fields.path}.ffdata' | |
| 64 -i '${db_source.ffindex.fields.path}.ffindex' | |
| 65 #else | |
| 66 -d '$db_source.ffdata' | |
| 67 -i '$db_source.ffindex' | |
| 68 #end if | |
| 69 </token> | |
| 70 <token name="@db_source2@"> | |
| 71 #if $db_source.db_source_selector == 'indexed': | |
| 72 -sd '${db_source.ffindex.fields.path}.ffdata' | |
| 73 -si '${db_source.ffindex.fields.path}.ffindex' | |
| 74 #else | |
| 75 -sd '$db_source.ffdata' | |
| 76 -si '$db_source.ffindex' | |
| 77 #end if | |
| 78 </token> | |
| 79 </macros> |