Mercurial > repos > guerler > ffindex_dbkit_extract
diff macros.xml @ 0:ad4b7db26523 draft
"planemo upload commit b68cb41b1884703c4f1574b65a6408d7d0cca321"
author | guerler |
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date | Tue, 23 Mar 2021 23:06:45 +0000 |
parents | |
children | 1d9fcf2157e0 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/macros.xml Tue Mar 23 23:06:45 2021 +0000 @@ -0,0 +1,79 @@ +<macros> + <xml name="requirements"> + <requirements> + <requirement type="package" version="0.1">ffindex-dbkit</requirement> + <yield /> + </requirements> + </xml> + <xml name="ffindex_single_inputs"> + <param name="ffdata" type="data" format="ffdata" label="PDB Database" help="Database Data file." /> + <param name="ffindex" type="data" format="ffindex" label="PDB Database Index" help="Database Index file." /> + </xml> + + <xml name="citations"> + <citations> + <!--citation type="doi">10.1021/ci300579r</citation--> + </citations> + </xml> + <xml name="logfile"> + <param name="logfile" type="boolean" truevalue="true" falsevalue="false" checked="false" label="Output log file" /> + </xml> + + <xml name="db_source"> + <conditional name="db_source"> + <param name="db_source_selector" type="select" label="Custom or built-in ffindex" help="Built-ins have been indexed using ffindex"> + <option value="indexed" selected="true">Use a built-in index</option> + <option value="history">Use a ffindex from history</option> + </param> + <when value="indexed"> + <param name="ffindex" type="select" label="Select ffindex" help=""> + <options from_data_table="ffindex_indices"> + <filter type="sort_by" column="0" /> + <validator type="no_options" message="No indices are available" /> + </options> + </param> + </when> + <when value="history"> + <expand macro="ffindex_single_inputs" /> + </when> + </conditional> + </xml> + <xml name="db_source2"> + <conditional name="db_source2"> + <param name="db_source_selector" type="select" label="Custom or built-in ffindex" help="Built-ins have been indexed using ffindex"> + <option value="indexed" selected="true">Use a built-in index</option> + <option value="history">Use a ffindex from history</option> + </param> + <when value="indexed"> + <param name="ffindex" type="select" label="Select ffindex" help=""> + <options from_data_table="ffindex_indices"> + <filter type="sort_by" column="0" /> + <validator type="no_options" message="No indices are available" /> + </options> + </param> + </when> + <when value="history"> + <expand macro="ffindex_single_inputs" /> + </when> + </conditional> + </xml> + + <token name="@db_source@"> + #if $db_source.db_source_selector == 'indexed': + -d '${db_source.ffindex.fields.path}.ffdata' + -i '${db_source.ffindex.fields.path}.ffindex' + #else + -d '$db_source.ffdata' + -i '$db_source.ffindex' + #end if + </token> + <token name="@db_source2@"> + #if $db_source.db_source_selector == 'indexed': + -sd '${db_source.ffindex.fields.path}.ffdata' + -si '${db_source.ffindex.fields.path}.ffindex' + #else + -sd '$db_source.ffdata' + -si '$db_source.ffindex' + #end if + </token> +</macros>