# HG changeset patch
# User guerler
# Date 1617906004 0
# Node ID 4def47766a3c48028227fdf93b1d52e407dde3b1
# Parent  953f0fd655c015c100b83e1fd046d993b959ee4c
"planemo upload commit fe7295ad48151648562b06d5b075a68d77747326"

diff -r 953f0fd655c0 -r 4def47766a3c dbkit_extract.xml
--- a/dbkit_extract.xml	Thu Apr 01 19:36:20 2021 +0000
+++ b/dbkit_extract.xml	Thu Apr 08 18:20:04 2021 +0000
@@ -19,8 +19,8 @@
     </inputs>
     <outputs>
         <data format="ffindex" name="outindex" label="DBKit Extracted Index" />
-        <data format="ffdata" name="outdata" label="DBKit Extraced Database" />
-        <data format="txt" name="logfile" label="DBKit Extraced Log">
+        <data format="ffdata" name="outdata" label="DBKit Extracted Database" />
+        <data format="txt" name="logfile" label="DBKit Extracted Log">
             <filter>logfile</filter>
         </data>
     </outputs>
@@ -44,6 +44,15 @@
             <output name="outindex" file="merge/second.ffindex" />
             <output name="outdata" file="merge/second.ffdata" />
         </test>
+        <test>
+            <param name="list" value="create/pdb_gz.tabular" />
+            <conditional name="db_source">
+                <param name="db_source_selector" value="indexed" />
+                <param name="ffindex" value="first_gz" />
+            </conditional>
+            <output name="outindex" file="extract/third.ffindex" />
+            <output name="outdata" file="extract/third.ffdata" />
+        </test>
     </tests>
     <help><![CDATA[
 
diff -r 953f0fd655c0 -r 4def47766a3c test-data/create/first_gz.ffdata
Binary file test-data/create/first_gz.ffdata has changed
diff -r 953f0fd655c0 -r 4def47766a3c test-data/create/first_gz.ffindex
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/create/first_gz.ffindex	Thu Apr 08 18:20:04 2021 +0000
@@ -0,0 +1,11 @@
+pdb6vyb.ent.gz	0	464845
+pdb6vyo.ent.gz	464845	189205
+pdb6w37.ent.gz	654050	15368
+pdb6w4h.ent.gz	669418	168909
+pdb6w9c.ent.gz	838327	318155
+pdb6w9q.ent.gz	1156482	46740
+pdb6wey.ent.gz	1203222	107427
+pdb6wji.ent.gz	1310649	215621
+pdb6wlc.ent.gz	1526270	265637
+pdb7bqy.ent.gz	1791907	115398
+pdb7bv2.ent.gz	1907305	167678
diff -r 953f0fd655c0 -r 4def47766a3c test-data/create/pdb_gz.tabular
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/create/pdb_gz.tabular	Thu Apr 08 18:20:04 2021 +0000
@@ -0,0 +1,2 @@
+pdb6w37.ent.gz
+pdb6w4h.ent.gz
\ No newline at end of file
diff -r 953f0fd655c0 -r 4def47766a3c test-data/extract/third.ffdata
Binary file test-data/extract/third.ffdata has changed
diff -r 953f0fd655c0 -r 4def47766a3c test-data/extract/third.ffindex
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/extract/third.ffindex	Thu Apr 08 18:20:04 2021 +0000
@@ -0,0 +1,2 @@
+pdb6w37.ent.gz	0	15368
+pdb6w4h.ent.gz	15368	168909
diff -r 953f0fd655c0 -r 4def47766a3c test-data/ffindex_indices.loc
--- a/test-data/ffindex_indices.loc	Thu Apr 01 19:36:20 2021 +0000
+++ b/test-data/ffindex_indices.loc	Thu Apr 08 18:20:04 2021 +0000
@@ -2,4 +2,5 @@
 #unique_id	display name	path	type
 second	PDB 2021-03-17-second	${__HERE__}/merge/second	pdb
 first	PDB 2021-03-17-first	${__HERE__}/create/first	pdb
+first_gz	PDB_GZ 2021-03-17-first	${__HERE__}/create/first_gz	pdb
 merge	PDB 2021-03-17-merge	${__HERE__}/merge/result	pdb
\ No newline at end of file
diff -r 953f0fd655c0 -r 4def47766a3c test-data/merge/result.log
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/merge/result.log	Thu Apr 08 18:20:04 2021 +0000
@@ -0,0 +1,4 @@
+Detected 10 entries.
+Skipping existing entry 6vyb.pdb.
+Skipping existing entry 7bv2.pdb.
+Added 5 entries.