Mercurial > repos > guerler > hhsearch
diff test-data/6VYB_A.hhr @ 0:0dd6880ff950 draft
"planemo upload commit 2ce78baac81e5fc7df43ca3ec81a3c51fdb98003"
| author | guerler |
|---|---|
| date | Tue, 23 Mar 2021 21:38:01 +0000 |
| parents | |
| children |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/6VYB_A.hhr Tue Mar 23 21:38:01 2021 +0000 @@ -0,0 +1,156 @@ +Query 6VYB_A +Match_columns 966 +No_of_seqs 1 out of 1 +Neff 1 +Searched_HMMs 100 +Date Sun Jul 26 21:21:46 2020 +Command hhblits -i test-data/query.fasta -o query.hhr -d test-data/dbCAN-fam-V8/dbCAN-fam-V8 + + No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM + 1 ABN54336.1|CE12|183-378|9.5e-5 17.2 1.1 0.0014 32.1 0.0 13 586-598 1-13 (210) + 2 ANU56961.1|PL12_2.hmm|1.8e-61| 3.4 9.9 0.013 24.9 0.0 32 900-931 38-69 (131) + 3 CAX58257.1|CE11|4-276|4.9e-122 2.1 18 0.023 25.0 0.0 38 857-894 6-54 (277) + 4 APK54672.1|GT103 2.1 18 0.023 24.9 0.0 168 629-825 1-184 (232) + 5 AAD04130.1|GT13|24-440|6.3e-18 1.7 23 0.03 25.6 0.0 47 302-349 156-203 (390) + 6 ACR10769.1|PL1|79-276|1.4e-54 1.3 33 0.041 21.6 0.0 53 59-111 59-115 (196) + 7 AAR43340.1|GT19|17-374|6.8e-14 1.3 33 0.041 23.4 0.0 14 254-267 116-129 (357) + 8 BAD47100.1|GH125|74-473|3.2e-1 1.3 32 0.041 24.6 0.0 41 98-138 291-338 (402) + 9 ACY95489.1|CBM14|33-88|9.4e-16 1.1 38 0.047 18.2 0.0 36 238-277 39-74 (81) + 10 AAK92730.1|PL1_1.hmm|3.6e-111| 0.9 49 0.063 21.4 0.0 50 277-326 18-67 (199) + +No 1 +>ABN54336.1|CE12|183-378|9.5e-54 +Probab=17.23 E-value=1.1 Score=32.05 Aligned_cols=13 Identities=38% Similarity=0.705 Sum_probs=11.0 Template_Neff=5.400 + +Q 6VYB_A 586 TMYICGDSTECSN 598 (966) +Q Consensus 586 tmyicgdstecsn 598 (966) + |+|||||||-|.. +T Consensus 1 tI~l~GDSTva~~ 13 (210) +T ABN54336.1|CE1 1 TIFLAGDSTVANY 13 (210) +Confidence 6899999998853 + + +No 2 +>ANU56961.1|PL12_2.hmm|1.8e-61|404-534 +Probab=3.41 E-value=9.9 Score=24.92 Aligned_cols=32 Identities=25% Similarity=0.544 Sum_probs=26.7 Template_Neff=2.600 + +Q 6VYB_A 900 ICHDGKAHFPREGVFVSNGTHWFVTQRNFYEP 931 (966) +Q Consensus 900 ichdgkahfpregvfvsngthwfvtqrnfyep 931 (966) + .-++|+-.||..|.||-.|..--..+|+.|.. +T Consensus 38 Lw~~GRnf~PDaG~yvY~Gd~~~~~~R~wfR~ 69 (131) +T ANU56961.1|PL1 38 LWVKGRNFFPDAGSYVYAGDSEINKLRNWFRQ 69 (131) +Confidence 56899999999999999998866777777753 + + +No 3 +>CAX58257.1|CE11|4-276|4.9e-122 +Probab=2.10 E-value=18 Score=25.00 Aligned_cols=38 Identities=32% Similarity=0.532 Sum_probs=26.5 Template_Neff=4.700 + +Q 6VYB_A 857 KRVDFCGKGYHL------MSFPQSAPHGVVFLHVT-----YVPAQEKNF 894 (966) +Q Consensus 857 krvdfcgkgyhl------msfpqsaphgvvflhvt-----yvpaqeknf 894 (966) + +.|.+.|.|.|- --.|..+.+|++|..+- .+||.-.+. +T Consensus 6 ~~v~~~GiGLHsG~~v~l~l~PA~~~tGIvF~R~dl~~~~~IpA~~~~V 54 (277) +T CAX58257.1|CE1 6 RSVSLTGVGLHSGKKVTLTLRPAPANTGIVFRRTDLDGPPEIPADADNV 54 (277) +Confidence 456778888773 44688888999998875 555554443 + + +No 4 +>APK54672.1|GT103 +Probab=2.06 E-value=18 Score=24.88 Aligned_cols=168 Identities=24% Similarity=0.353 Sum_probs=95.1 Template_Neff=2.800 + +Q 6VYB_A 629 FAQVKQIYKTPPIKDFGGFNFSQILPDPSKSKRSFIEDLLFNKVTFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFG 708 (966) +Q Consensus 629 faqvkqiyktppikdfggfnfsqilpdpskskrsfiedllfnkvtfngltvlpplltdemiaqytsallagtitsgwtfg 708 (966) + |.|-|.|+.-+.+.+-..--+.--||..-..++.|-.+.-.+---|.||-- ..||. +T Consensus 1 ~~~~~~~~s~~~~~~~d~~~i~LsLPET~~RR~~f~~~~~~G~q~FdGlR~----------------------~~GWI-- 56 (232) +T APK54672.1|GT1 1 FSQYKSIFSQCEISPQDVDFICLSLPETIERRRDFEQDNPYGIQLFDGLRH----------------------RPGWI-- 56 (232) +Confidence 456667776666666555445555777666666666555544444555432 34663 + + +Q 6VYB_A 709 AGAALQIPFAMQMAYRFNGIGVTQNVLYENQKLIANQFNSAIGKIQDSLSSTAS------AL-------GKLQDVVNQNA 775 (966) +Q Consensus 709 agaalqipfamqmayrfngigvtqnvlyenqklianqfnsaigkiqdslsstas------al-------gklqdvvnqna 775 (966) + |+++..-+..+-|- --+..+-.+-|..-+....|.+.+..+++-|...-+ .| -|+..|-.... +T Consensus 57 -GCglSyk~l~r~al---~~~~~~lti~EDDV~fp~df~~~~~~v~~yL~~~~~~WDvFsGliAdlH~dtkIl~ve~~~g 132 (232) +T APK54672.1|GT1 57 -GCGLSYKFLARKAL---ENGIPQLTICEDDVLFPPDFESKYSQVKDYLDTRRNDWDVFSGLIADLHPDTKILKVERFDG 132 (232) +Confidence 33333333222222 234455567788888888888888888887753221 11 23444444444 + + +Q 6VYB_A 776 QALNTLVKQLSSNFGAISSVLNDILSRLDPPEAE---VQIDRLITGRLQSLQT 825 (966) +Q Consensus 776 qalntlvkqlssnfgaissvlndilsrldppeae---vqidrlitgrlqslqt 825 (966) + ...-++=|-.|--|..-+.-.-++|+..||.... ..|||.+.. .+.|.. +T Consensus 133 ~~yv~iDkMtSmV~NIYs~~al~~L~~Wd~~~~d~~TNTIDRylE~-~~~LrV 184 (232) +T APK54672.1|GT1 133 IEYVTIDKMTSMVFNIYSESALEKLAQWDEKNHDAETNTIDRYLEN-QEGLRV 184 (232) +Confidence 4555555555555555555555788888876544 468998753 334433 + + +No 5 +>AAD04130.1|GT13|24-440|6.3e-183 +Probab=1.69 E-value=23 Score=25.58 Aligned_cols=47 Identities=28% Similarity=0.384 Sum_probs=24.8 Template_Neff=3.500 + +Q 6VYB_A 302 ADSFVIRGDEVRQIAPGQTGKIADYNYKLP-DDFTGCVIAWNSNNLDNY 349 (966) +Q Consensus 302 adsfvirgdevrqiapgqtgkiadynyklp-ddftgcviawnsnnldny 349 (966) + +++++|-.|. -.|||.--.-...--+-|. |+---||-|||.|..... +T Consensus 156 ~~~VII~EdD-m~iapDFf~yf~~~~~lL~~D~sl~cvSaWNDNG~~~~ 203 (390) +T AAD04130.1|GT1 156 FSRVIIVEDD-LEIAPDFFSYFSATYPLLDRDPSLWCVSAWNDNGKEQF 203 (390) +Confidence 3344444433 3566653322222222233 444579999999987654 + + +No 6 +>ACR10769.1|PL1|79-276|1.4e-54 +Probab=1.28 E-value=33 Score=21.64 Aligned_cols=53 Identities=25% Similarity=0.395 Sum_probs=33.8 Template_Neff=5.700 + +Q 6VYB_A 59 KSN-IIRGWIFGTTLD--SKSLLIVNNATNVVIKVCEFQFCNDPFLGVCTF-EYVSF 111 (966) +Q Consensus 59 ksn-iirgwifgttld--sksllivnnatnvvikvcefqfcndpflgvctf-eyvsf 111 (966) + .+| |||-.-|-...+ ...-+-++++.+|.|--|+|.-..|-.+.+..- .||.+ +T Consensus 59 ~~NVIIRnl~~~~~~~~~~~Dai~i~~s~nVWIDHcsfs~~~Dg~ldv~~~s~~VTi 115 (196) +T ACR10769.1|PL1 59 ASNVIIRNLRIRDGNDGFDGDAISIDGSSNVWIDHCSFSWGGDGLIDIKKGSDNVTI 115 (196) +Confidence 344 566666655553 223333578899999999999998887755432 34443 + + +No 7 +>AAR43340.1|GT19|17-374|6.8e-144 +Probab=1.27 E-value=33 Score=23.45 Aligned_cols=14 Identities=36% Similarity=0.700 Sum_probs=11.3 Template_Neff=5.700 + +Q 6VYB_A 254 SVYAWNRKRISNCV 267 (966) +Q Consensus 254 svyawnrkrisncv 267 (966) + +|+||..+|+..-. +T Consensus 116 qvWAWr~~R~k~i~ 129 (357) +T AAR43340.1|GT1 116 QVWAWRPGRIKKIK 129 (357) +Confidence 79999999987643 + + +No 8 +>BAD47100.1|GH125|74-473|3.2e-189 +Probab=1.27 E-value=32 Score=24.58 Aligned_cols=41 Identities=32% Similarity=0.588 Sum_probs=32.3 Template_Neff=3.500 + +Q 6VYB_A 98 DPFLGVCTFEYVSFKNLREFVFKNIDGYF-------KIYSKHTPINLV 138 (966) +Q Consensus 98 dpflgvctfeyvsfknlrefvfknidgyf-------kiyskhtpinlv 138 (966) + -|+||-|.-+---+.|-|+|+...-.-|| -|=|.|++.+-+ +T Consensus 291 lPylG~~~~~DpiYqnTR~~iLS~~NPYy~~G~~~~GIGsPHtg~~~i 338 (402) +T BAD47100.1|GH1 291 LPYLGYCSKDDPIYQNTRRFILSKENPYFYEGKAAEGIGSPHTGPRYI 338 (402) +Confidence 48899999888889999999988766665 266778876655 + + +No 9 +>ACY95489.1|CBM14|33-88|9.4e-16 +Probab=1.13 E-value=38 Score=18.15 Aligned_cols=36 Identities=31% Similarity=0.470 Sum_probs=23.4 Template_Neff=6.300 + +Q 6VYB_A 238 TNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSA 277 (966) +Q Consensus 238 tnlcpfgevfnatrfasvyawnrkrisncvadysvlynsa 277 (966) + ...||.|.+|+...-.=++.++-+ .|--| |+-|||. +T Consensus 39 ~~~Cp~g~~FD~~~~~C~~~~~v~---~C~~~-~~~~~~~ 74 (81) +T ACY95489.1|CBM 39 EFSCPPGLVFDPETQTCDWPENVD---DCSNC-SIRYNSG 74 (81) +Confidence 458999999998876666644431 24433 5666664 + + +No 10 +>AAK92730.1|PL1_1.hmm|3.6e-111|138-336 +Probab=0.87 E-value=49 Score=21.39 Aligned_cols=50 Identities=28% Similarity=0.484 Sum_probs=43.2 Template_Neff=2.500 + +Q 6VYB_A 277 ASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGKIADY 326 (966) +Q Consensus 277 asfstfkcygvsptklndlcftnvyadsfvirgdevrqiapgqtgkiady 326 (966) + .|+.|..--|++-.--+.-|+|--|+....|.|=.+..+.|+..|-|.|- +T Consensus 18 ~S~KTIDGRGa~V~I~~g~citiq~v~nVIIHgi~IH~c~p~~~g~ir~s 67 (199) +T AAK92730.1|PL1 18 NSFKTIDGRGANVHIANGACITIQYVSNVIIHGIHIHDCKPGGNGMVRDS 67 (199) +Confidence 46777777888888888899999999999999999999999998888764 + +