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comparison test-data/6VYB_A.hhr @ 0:c4d9ea0ddd42 draft

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"planemo upload commit d12c32a45bcd441307e632fca6d9af7d60289d44-dirty"
author guerler
date Mon, 27 Jul 2020 04:37:03 -0400
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-1:000000000000 0:c4d9ea0ddd42
1 Query 6VYB_A
2 Match_columns 966
3 No_of_seqs 1 out of 1
4 Neff 1
5 Searched_HMMs 100
6 Date Sun Jul 26 21:21:46 2020
7 Command hhblits -i test-data/query.fasta -o query.hhr -d test-data/dbCAN-fam-V8/dbCAN-fam-V8
8
9 No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
10 1 ABN54336.1|CE12|183-378|9.5e-5 17.2 1.1 0.0014 32.1 0.0 13 586-598 1-13 (210)
11 2 ANU56961.1|PL12_2.hmm|1.8e-61| 3.4 9.9 0.013 24.9 0.0 32 900-931 38-69 (131)
12 3 CAX58257.1|CE11|4-276|4.9e-122 2.1 18 0.023 25.0 0.0 38 857-894 6-54 (277)
13 4 APK54672.1|GT103 2.1 18 0.023 24.9 0.0 168 629-825 1-184 (232)
14 5 AAD04130.1|GT13|24-440|6.3e-18 1.7 23 0.03 25.6 0.0 47 302-349 156-203 (390)
15 6 ACR10769.1|PL1|79-276|1.4e-54 1.3 33 0.041 21.6 0.0 53 59-111 59-115 (196)
16 7 AAR43340.1|GT19|17-374|6.8e-14 1.3 33 0.041 23.4 0.0 14 254-267 116-129 (357)
17 8 BAD47100.1|GH125|74-473|3.2e-1 1.3 32 0.041 24.6 0.0 41 98-138 291-338 (402)
18 9 ACY95489.1|CBM14|33-88|9.4e-16 1.1 38 0.047 18.2 0.0 36 238-277 39-74 (81)
19 10 AAK92730.1|PL1_1.hmm|3.6e-111| 0.9 49 0.063 21.4 0.0 50 277-326 18-67 (199)
20
21 No 1
22 >ABN54336.1|CE12|183-378|9.5e-54
23 Probab=17.23 E-value=1.1 Score=32.05 Aligned_cols=13 Identities=38% Similarity=0.705 Sum_probs=11.0 Template_Neff=5.400
24
25 Q 6VYB_A 586 TMYICGDSTECSN 598 (966)
26 Q Consensus 586 tmyicgdstecsn 598 (966)
27 |+|||||||-|..
28 T Consensus 1 tI~l~GDSTva~~ 13 (210)
29 T ABN54336.1|CE1 1 TIFLAGDSTVANY 13 (210)
30 Confidence 6899999998853
31
32
33 No 2
34 >ANU56961.1|PL12_2.hmm|1.8e-61|404-534
35 Probab=3.41 E-value=9.9 Score=24.92 Aligned_cols=32 Identities=25% Similarity=0.544 Sum_probs=26.7 Template_Neff=2.600
36
37 Q 6VYB_A 900 ICHDGKAHFPREGVFVSNGTHWFVTQRNFYEP 931 (966)
38 Q Consensus 900 ichdgkahfpregvfvsngthwfvtqrnfyep 931 (966)
39 .-++|+-.||..|.||-.|..--..+|+.|..
40 T Consensus 38 Lw~~GRnf~PDaG~yvY~Gd~~~~~~R~wfR~ 69 (131)
41 T ANU56961.1|PL1 38 LWVKGRNFFPDAGSYVYAGDSEINKLRNWFRQ 69 (131)
42 Confidence 56899999999999999998866777777753
43
44
45 No 3
46 >CAX58257.1|CE11|4-276|4.9e-122
47 Probab=2.10 E-value=18 Score=25.00 Aligned_cols=38 Identities=32% Similarity=0.532 Sum_probs=26.5 Template_Neff=4.700
48
49 Q 6VYB_A 857 KRVDFCGKGYHL------MSFPQSAPHGVVFLHVT-----YVPAQEKNF 894 (966)
50 Q Consensus 857 krvdfcgkgyhl------msfpqsaphgvvflhvt-----yvpaqeknf 894 (966)
51 +.|.+.|.|.|- --.|..+.+|++|..+- .+||.-.+.
52 T Consensus 6 ~~v~~~GiGLHsG~~v~l~l~PA~~~tGIvF~R~dl~~~~~IpA~~~~V 54 (277)
53 T CAX58257.1|CE1 6 RSVSLTGVGLHSGKKVTLTLRPAPANTGIVFRRTDLDGPPEIPADADNV 54 (277)
54 Confidence 456778888773 44688888999998875 555554443
55
56
57 No 4
58 >APK54672.1|GT103
59 Probab=2.06 E-value=18 Score=24.88 Aligned_cols=168 Identities=24% Similarity=0.353 Sum_probs=95.1 Template_Neff=2.800
60
61 Q 6VYB_A 629 FAQVKQIYKTPPIKDFGGFNFSQILPDPSKSKRSFIEDLLFNKVTFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFG 708 (966)
62 Q Consensus 629 faqvkqiyktppikdfggfnfsqilpdpskskrsfiedllfnkvtfngltvlpplltdemiaqytsallagtitsgwtfg 708 (966)
63 |.|-|.|+.-+.+.+-..--+.--||..-..++.|-.+.-.+---|.||-- ..||.
64 T Consensus 1 ~~~~~~~~s~~~~~~~d~~~i~LsLPET~~RR~~f~~~~~~G~q~FdGlR~----------------------~~GWI-- 56 (232)
65 T APK54672.1|GT1 1 FSQYKSIFSQCEISPQDVDFICLSLPETIERRRDFEQDNPYGIQLFDGLRH----------------------RPGWI-- 56 (232)
66 Confidence 456667776666666555445555777666666666555544444555432 34663
67
68
69 Q 6VYB_A 709 AGAALQIPFAMQMAYRFNGIGVTQNVLYENQKLIANQFNSAIGKIQDSLSSTAS------AL-------GKLQDVVNQNA 775 (966)
70 Q Consensus 709 agaalqipfamqmayrfngigvtqnvlyenqklianqfnsaigkiqdslsstas------al-------gklqdvvnqna 775 (966)
71 |+++..-+..+-|- --+..+-.+-|..-+....|.+.+..+++-|...-+ .| -|+..|-....
72 T Consensus 57 -GCglSyk~l~r~al---~~~~~~lti~EDDV~fp~df~~~~~~v~~yL~~~~~~WDvFsGliAdlH~dtkIl~ve~~~g 132 (232)
73 T APK54672.1|GT1 57 -GCGLSYKFLARKAL---ENGIPQLTICEDDVLFPPDFESKYSQVKDYLDTRRNDWDVFSGLIADLHPDTKILKVERFDG 132 (232)
74 Confidence 33333333222222 234455567788888888888888888887753221 11 23444444444
75
76
77 Q 6VYB_A 776 QALNTLVKQLSSNFGAISSVLNDILSRLDPPEAE---VQIDRLITGRLQSLQT 825 (966)
78 Q Consensus 776 qalntlvkqlssnfgaissvlndilsrldppeae---vqidrlitgrlqslqt 825 (966)
79 ...-++=|-.|--|..-+.-.-++|+..||.... ..|||.+.. .+.|..
80 T Consensus 133 ~~yv~iDkMtSmV~NIYs~~al~~L~~Wd~~~~d~~TNTIDRylE~-~~~LrV 184 (232)
81 T APK54672.1|GT1 133 IEYVTIDKMTSMVFNIYSESALEKLAQWDEKNHDAETNTIDRYLEN-QEGLRV 184 (232)
82 Confidence 4555555555555555555555788888876544 468998753 334433
83
84
85 No 5
86 >AAD04130.1|GT13|24-440|6.3e-183
87 Probab=1.69 E-value=23 Score=25.58 Aligned_cols=47 Identities=28% Similarity=0.384 Sum_probs=24.8 Template_Neff=3.500
88
89 Q 6VYB_A 302 ADSFVIRGDEVRQIAPGQTGKIADYNYKLP-DDFTGCVIAWNSNNLDNY 349 (966)
90 Q Consensus 302 adsfvirgdevrqiapgqtgkiadynyklp-ddftgcviawnsnnldny 349 (966)
91 +++++|-.|. -.|||.--.-...--+-|. |+---||-|||.|.....
92 T Consensus 156 ~~~VII~EdD-m~iapDFf~yf~~~~~lL~~D~sl~cvSaWNDNG~~~~ 203 (390)
93 T AAD04130.1|GT1 156 FSRVIIVEDD-LEIAPDFFSYFSATYPLLDRDPSLWCVSAWNDNGKEQF 203 (390)
94 Confidence 3344444433 3566653322222222233 444579999999987654
95
96
97 No 6
98 >ACR10769.1|PL1|79-276|1.4e-54
99 Probab=1.28 E-value=33 Score=21.64 Aligned_cols=53 Identities=25% Similarity=0.395 Sum_probs=33.8 Template_Neff=5.700
100
101 Q 6VYB_A 59 KSN-IIRGWIFGTTLD--SKSLLIVNNATNVVIKVCEFQFCNDPFLGVCTF-EYVSF 111 (966)
102 Q Consensus 59 ksn-iirgwifgttld--sksllivnnatnvvikvcefqfcndpflgvctf-eyvsf 111 (966)
103 .+| |||-.-|-...+ ...-+-++++.+|.|--|+|.-..|-.+.+..- .||.+
104 T Consensus 59 ~~NVIIRnl~~~~~~~~~~~Dai~i~~s~nVWIDHcsfs~~~Dg~ldv~~~s~~VTi 115 (196)
105 T ACR10769.1|PL1 59 ASNVIIRNLRIRDGNDGFDGDAISIDGSSNVWIDHCSFSWGGDGLIDIKKGSDNVTI 115 (196)
106 Confidence 344 566666655553 223333578899999999999998887755432 34443
107
108
109 No 7
110 >AAR43340.1|GT19|17-374|6.8e-144
111 Probab=1.27 E-value=33 Score=23.45 Aligned_cols=14 Identities=36% Similarity=0.700 Sum_probs=11.3 Template_Neff=5.700
112
113 Q 6VYB_A 254 SVYAWNRKRISNCV 267 (966)
114 Q Consensus 254 svyawnrkrisncv 267 (966)
115 +|+||..+|+..-.
116 T Consensus 116 qvWAWr~~R~k~i~ 129 (357)
117 T AAR43340.1|GT1 116 QVWAWRPGRIKKIK 129 (357)
118 Confidence 79999999987643
119
120
121 No 8
122 >BAD47100.1|GH125|74-473|3.2e-189
123 Probab=1.27 E-value=32 Score=24.58 Aligned_cols=41 Identities=32% Similarity=0.588 Sum_probs=32.3 Template_Neff=3.500
124
125 Q 6VYB_A 98 DPFLGVCTFEYVSFKNLREFVFKNIDGYF-------KIYSKHTPINLV 138 (966)
126 Q Consensus 98 dpflgvctfeyvsfknlrefvfknidgyf-------kiyskhtpinlv 138 (966)
127 -|+||-|.-+---+.|-|+|+...-.-|| -|=|.|++.+-+
128 T Consensus 291 lPylG~~~~~DpiYqnTR~~iLS~~NPYy~~G~~~~GIGsPHtg~~~i 338 (402)
129 T BAD47100.1|GH1 291 LPYLGYCSKDDPIYQNTRRFILSKENPYFYEGKAAEGIGSPHTGPRYI 338 (402)
130 Confidence 48899999888889999999988766665 266778876655
131
132
133 No 9
134 >ACY95489.1|CBM14|33-88|9.4e-16
135 Probab=1.13 E-value=38 Score=18.15 Aligned_cols=36 Identities=31% Similarity=0.470 Sum_probs=23.4 Template_Neff=6.300
136
137 Q 6VYB_A 238 TNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSA 277 (966)
138 Q Consensus 238 tnlcpfgevfnatrfasvyawnrkrisncvadysvlynsa 277 (966)
139 ...||.|.+|+...-.=++.++-+ .|--| |+-|||.
140 T Consensus 39 ~~~Cp~g~~FD~~~~~C~~~~~v~---~C~~~-~~~~~~~ 74 (81)
141 T ACY95489.1|CBM 39 EFSCPPGLVFDPETQTCDWPENVD---DCSNC-SIRYNSG 74 (81)
142 Confidence 458999999998876666644431 24433 5666664
143
144
145 No 10
146 >AAK92730.1|PL1_1.hmm|3.6e-111|138-336
147 Probab=0.87 E-value=49 Score=21.39 Aligned_cols=50 Identities=28% Similarity=0.484 Sum_probs=43.2 Template_Neff=2.500
148
149 Q 6VYB_A 277 ASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGKIADY 326 (966)
150 Q Consensus 277 asfstfkcygvsptklndlcftnvyadsfvirgdevrqiapgqtgkiady 326 (966)
151 .|+.|..--|++-.--+.-|+|--|+....|.|=.+..+.|+..|-|.|-
152 T Consensus 18 ~S~KTIDGRGa~V~I~~g~citiq~v~nVIIHgi~IH~c~p~~~g~ir~s 67 (199)
153 T AAK92730.1|PL1 18 NSFKTIDGRGANVHIANGACITIQYVSNVIIHGIHIHDCKPGGNGMVRDS 67 (199)
154 Confidence 46777777888888888899999999999999999999999998888764
155
156