Mercurial > repos > guerler > spring_minz

changeset 3:576c88c2ed11 draft

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"planemo upload commit 3e145bda7677bf7850a7aa6d0cc41413902d44c0"
author guerler
date Tue, 30 Mar 2021 15:30:54 +0000
parents e311ac3ce995
children aaf729ca617f
files spring_minz.xml
diffstat 1 files changed, 5 insertions(+), 23 deletions(-) [+]
line wrap: on
line diff
--- a/spring_minz.xml	Tue Mar 30 01:47:21 2021 +0000
+++ b/spring_minz.xml	Tue Mar 30 15:30:54 2021 +0000
@@ -36,14 +36,14 @@
         #end if
     ]]>    </command>
     <inputs>
-        <param name="targets" type="data_collection" format="hhr" multiple="true" label="Target profiles" help="Homology search result of target/query profiles in 'hhr' format." />
+        <param name="targets" type="data" format="hhr" multiple="true" label="Target profiles" help="Homology search result of target/query profiles in 'hhr' format." />
         <conditional name="input_type">
             <param name="input_type_selector" type="select" label="Identify interactions across sets?">
                 <option value="yes" selected="True">yes</option>
                 <option value="no">no</option>
             </param>
             <when value="yes">
-                <param name="inputs" format="hhr" type="data_collection" multiple="true" label="Input profiles" help="Homology search results of input profiles in 'hhr' format." />
+                <param name="inputs" format="hhr" type="data" multiple="true" label="Input profiles" help="Homology search results of input profiles in 'hhr' format." />
             </when>
             <when value="no" />
         </conditional>
@@ -59,14 +59,7 @@
     </outputs>
     <tests>
         <test expect_num_outputs="1">
-            <param name="targets">
-                <collection type="list">
-                    <element name="NP_000282.1.hhr" value="minz/NP_000282.1.hhr" ftype="hhr" />
-                    <element name="NP_000290.2.hhr" value="minz/NP_000290.2.hhr" ftype="hhr" />
-                    <element name="NP_000548.2.hhr" value="minz/NP_000548.2.hhr" ftype="hhr" />
-                    <element name="NP_000836.2.hhr" value="minz/NP_000836.2.hhr" ftype="hhr" />
-                </collection>
-            </param>
+            <param name="targets" value="minz/NP_000282.1.hhr,minz/NP_000290.2.hhr,minz/NP_000548.2.hhr,minz/NP_000836.2.hhr" ftype="hhr" />
             <conditional name="input_type">
                 <param name="input_type_selector" value="no" />
             </conditional>
@@ -74,21 +67,10 @@
             <output name="output" file="minz/pdb70_result.0.txt" />
         </test>
         <test expect_num_outputs="1">
-            <param name="targets">
-                <collection type="list">
-                    <element name="NP_000282.1.hhr" value="minz/NP_000282.1.hhr" ftype="hhr" />
-                </collection>
-            </param>
+            <param name="targets" value="minz/NP_000282.1.hhr" ftype="hhr" />
             <conditional name="input_type">
                 <param name="input_type_selector" value="yes" />
-                <param name="inputs">
-                    <collection type="list">
-                        <element name="NP_000282.1.hhr" value="minz/NP_000282.1.hhr" ftype="hhr" />
-                        <element name="NP_000290.2.hhr" value="minz/NP_000290.2.hhr" ftype="hhr" />
-                        <element name="NP_000548.2.hhr" value="minz/NP_000548.2.hhr" ftype="hhr" />
-                        <element name="NP_000836.2.hhr" value="minz/NP_000836.2.hhr" ftype="hhr" />
-                    </collection>
-                </param>
+                <param name="inputs" value="minz/NP_000282.1.hhr,minz/NP_000290.2.hhr,minz/NP_000548.2.hhr,minz/NP_000836.2.hhr" ftype="hhr" />
             </conditional>
             <param name="crossreference" value="minz/pdb70_random.txt" />
             <output name="output" file="minz/pdb70_result.1.txt" />