Mercurial > repos > guerler > springsuite
annotate planemo/lib/python3.7/site-packages/bioblend/util/__init__.py @ 1:56ad4e20f292 draft
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
author | guerler |
---|---|
date | Fri, 31 Jul 2020 00:32:28 -0400 |
parents | d30785e31577 |
children |
rev | line source |
---|---|
0
d30785e31577
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
guerler
parents:
diff
changeset
|
1 import os |
d30785e31577
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
guerler
parents:
diff
changeset
|
2 from collections import namedtuple |
d30785e31577
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
guerler
parents:
diff
changeset
|
3 |
d30785e31577
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
guerler
parents:
diff
changeset
|
4 |
d30785e31577
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
guerler
parents:
diff
changeset
|
5 class Bunch(object): |
d30785e31577
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
guerler
parents:
diff
changeset
|
6 """ |
d30785e31577
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
guerler
parents:
diff
changeset
|
7 A convenience class to allow dict keys to be represented as object fields. |
d30785e31577
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
guerler
parents:
diff
changeset
|
8 |
d30785e31577
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
guerler
parents:
diff
changeset
|
9 The end result is that this allows a dict to be to be represented the same |
d30785e31577
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
guerler
parents:
diff
changeset
|
10 as a database class, thus the two become interchangeable as a data source. |
d30785e31577
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
guerler
parents:
diff
changeset
|
11 """ |
d30785e31577
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
guerler
parents:
diff
changeset
|
12 def __init__(self, **kwargs): |
d30785e31577
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
guerler
parents:
diff
changeset
|
13 self.__dict__.update(kwargs) |
d30785e31577
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
guerler
parents:
diff
changeset
|
14 |
d30785e31577
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
guerler
parents:
diff
changeset
|
15 def __repr__(self): |
d30785e31577
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
guerler
parents:
diff
changeset
|
16 """ |
d30785e31577
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
guerler
parents:
diff
changeset
|
17 Return the contents of the dict in a printable representation |
d30785e31577
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
guerler
parents:
diff
changeset
|
18 """ |
d30785e31577
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
guerler
parents:
diff
changeset
|
19 return str(self.__dict__) |
d30785e31577
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
guerler
parents:
diff
changeset
|
20 |
d30785e31577
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
guerler
parents:
diff
changeset
|
21 |
d30785e31577
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
guerler
parents:
diff
changeset
|
22 def _file_stream_close(self): |
d30785e31577
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
guerler
parents:
diff
changeset
|
23 """ |
d30785e31577
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
guerler
parents:
diff
changeset
|
24 Close the open file descriptor associated with the FileStream |
d30785e31577
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
guerler
parents:
diff
changeset
|
25 object. |
d30785e31577
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
guerler
parents:
diff
changeset
|
26 """ |
d30785e31577
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
guerler
parents:
diff
changeset
|
27 self[1].close() |
d30785e31577
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
guerler
parents:
diff
changeset
|
28 |
d30785e31577
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
guerler
parents:
diff
changeset
|
29 |
d30785e31577
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
guerler
parents:
diff
changeset
|
30 FileStream = namedtuple("FileStream", ["name", "fd"]) |
d30785e31577
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
guerler
parents:
diff
changeset
|
31 FileStream.close = _file_stream_close |
d30785e31577
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
guerler
parents:
diff
changeset
|
32 |
d30785e31577
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
guerler
parents:
diff
changeset
|
33 |
d30785e31577
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
guerler
parents:
diff
changeset
|
34 def attach_file(path, name=None): |
d30785e31577
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
guerler
parents:
diff
changeset
|
35 """ |
d30785e31577
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
guerler
parents:
diff
changeset
|
36 Attach a path to a request payload object. |
d30785e31577
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
guerler
parents:
diff
changeset
|
37 |
d30785e31577
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
guerler
parents:
diff
changeset
|
38 :type path: str |
d30785e31577
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
guerler
parents:
diff
changeset
|
39 :param path: Path to file to attach to payload. |
d30785e31577
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
guerler
parents:
diff
changeset
|
40 |
d30785e31577
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
guerler
parents:
diff
changeset
|
41 :type name: str |
d30785e31577
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
guerler
parents:
diff
changeset
|
42 :param name: Name to give file, if different than actual pathname. |
d30785e31577
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
guerler
parents:
diff
changeset
|
43 |
d30785e31577
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
guerler
parents:
diff
changeset
|
44 :rtype: object |
d30785e31577
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
guerler
parents:
diff
changeset
|
45 :return: Returns an object compatible with requests post operation and |
d30785e31577
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
guerler
parents:
diff
changeset
|
46 capable of being closed with a ``close()`` method. |
d30785e31577
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
guerler
parents:
diff
changeset
|
47 """ |
d30785e31577
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
guerler
parents:
diff
changeset
|
48 if name is None: |
d30785e31577
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
guerler
parents:
diff
changeset
|
49 name = os.path.basename(path) |
d30785e31577
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
guerler
parents:
diff
changeset
|
50 attachment = FileStream(name, open(path, "rb")) |
d30785e31577
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
guerler
parents:
diff
changeset
|
51 return attachment |
d30785e31577
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
guerler
parents:
diff
changeset
|
52 |
d30785e31577
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
guerler
parents:
diff
changeset
|
53 |
d30785e31577
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
guerler
parents:
diff
changeset
|
54 __all__ = ( |
d30785e31577
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
guerler
parents:
diff
changeset
|
55 'Bunch', |
d30785e31577
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
guerler
parents:
diff
changeset
|
56 'attach_file', |
d30785e31577
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
guerler
parents:
diff
changeset
|
57 ) |