Mercurial > repos > guerler > springsuite

annotate planemo/lib/python3.7/site-packages/boto/services/result.py @ 1:56ad4e20f292 draft

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"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
author guerler
date Fri, 31 Jul 2020 00:32:28 -0400
parents d30785e31577
children
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1 #!/usr/bin/env python
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2 # Copyright (c) 2006,2007 Mitch Garnaat http://garnaat.org/
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3 #
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4 # Permission is hereby granted, free of charge, to any person obtaining a
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5 # copy of this software and associated documentation files (the
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6 # "Software"), to deal in the Software without restriction, including
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7 # without limitation the rights to use, copy, modify, merge, publish, dis-
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8 # tribute, sublicense, and/or sell copies of the Software, and to permit
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9 # persons to whom the Software is furnished to do so, subject to the fol-
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10 # lowing conditions:
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11 #
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12 # The above copyright notice and this permission notice shall be included
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13 # in all copies or substantial portions of the Software.
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14 #
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15 # THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS
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16 # OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABIL-
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17 # ITY, FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT
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18 # SHALL THE AUTHOR BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY,
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19 # WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
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20 # OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS
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21 # IN THE SOFTWARE.
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22 import os
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23 from datetime import datetime, timedelta
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24 from boto.utils import parse_ts
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25 import boto
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26
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27 class ResultProcessor(object):
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28
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29 LogFileName = 'log.csv'
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30
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31 def __init__(self, batch_name, sd, mimetype_files=None):
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32 self.sd = sd
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33 self.batch = batch_name
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34 self.log_fp = None
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35 self.num_files = 0
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36 self.total_time = 0
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37 self.min_time = timedelta.max
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38 self.max_time = timedelta.min
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39 self.earliest_time = datetime.max
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40 self.latest_time = datetime.min
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41 self.queue = self.sd.get_obj('output_queue')
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42 self.domain = self.sd.get_obj('output_domain')
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43
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44 def calculate_stats(self, msg):
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45 start_time = parse_ts(msg['Service-Read'])
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46 end_time = parse_ts(msg['Service-Write'])
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47 elapsed_time = end_time - start_time
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48 if elapsed_time > self.max_time:
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49 self.max_time = elapsed_time
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50 if elapsed_time < self.min_time:
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51 self.min_time = elapsed_time
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52 self.total_time += elapsed_time.seconds
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53 if start_time < self.earliest_time:
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54 self.earliest_time = start_time
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55 if end_time > self.latest_time:
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56 self.latest_time = end_time
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57
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58 def log_message(self, msg, path):
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59 keys = sorted(msg.keys())
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60 if not self.log_fp:
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61 self.log_fp = open(os.path.join(path, self.LogFileName), 'a')
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62 line = ','.join(keys)
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63 self.log_fp.write(line+'\n')
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64 values = []
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65 for key in keys:
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66 value = msg[key]
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67 if value.find(',') > 0:
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68 value = '"%s"' % value
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69 values.append(value)
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70 line = ','.join(values)
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71 self.log_fp.write(line+'\n')
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72
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73 def process_record(self, record, path, get_file=True):
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74 self.log_message(record, path)
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75 self.calculate_stats(record)
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76 outputs = record['OutputKey'].split(',')
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77 if 'OutputBucket' in record:
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78 bucket = boto.lookup('s3', record['OutputBucket'])
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79 else:
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80 bucket = boto.lookup('s3', record['Bucket'])
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81 for output in outputs:
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82 if get_file:
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83 key_name = output.split(';')[0]
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84 key = bucket.lookup(key_name)
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85 file_name = os.path.join(path, key_name)
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86 print('retrieving file: %s to %s' % (key_name, file_name))
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87 key.get_contents_to_filename(file_name)
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88 self.num_files += 1
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89
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90 def get_results_from_queue(self, path, get_file=True, delete_msg=True):
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91 m = self.queue.read()
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92 while m:
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93 if 'Batch' in m and m['Batch'] == self.batch:
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94 self.process_record(m, path, get_file)
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95 if delete_msg:
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96 self.queue.delete_message(m)
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97 m = self.queue.read()
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98
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99 def get_results_from_domain(self, path, get_file=True):
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100 rs = self.domain.query("['Batch'='%s']" % self.batch)
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101 for item in rs:
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102 self.process_record(item, path, get_file)
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103
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104 def get_results_from_bucket(self, path):
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105 bucket = self.sd.get_obj('output_bucket')
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106 if bucket:
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107 print('No output queue or domain, just retrieving files from output_bucket')
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108 for key in bucket:
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109 file_name = os.path.join(path, key)
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110 print('retrieving file: %s to %s' % (key, file_name))
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111 key.get_contents_to_filename(file_name)
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112 self.num_files + 1
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113
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114 def get_results(self, path, get_file=True, delete_msg=True):
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115 if not os.path.isdir(path):
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116 os.mkdir(path)
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117 if self.queue:
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118 self.get_results_from_queue(path, get_file)
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119 elif self.domain:
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120 self.get_results_from_domain(path, get_file)
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121 else:
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122 self.get_results_from_bucket(path)
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123 if self.log_fp:
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124 self.log_fp.close()
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125 print('%d results successfully retrieved.' % self.num_files)
d30785e31577 "planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
guerler
parents:
diff changeset
126 if self.num_files > 0:
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guerler
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127 self.avg_time = float(self.total_time)/self.num_files
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guerler
parents:
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128 print('Minimum Processing Time: %d' % self.min_time.seconds)
d30785e31577 "planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
guerler
parents:
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129 print('Maximum Processing Time: %d' % self.max_time.seconds)
d30785e31577 "planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
guerler
parents:
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130 print('Average Processing Time: %f' % self.avg_time)
d30785e31577 "planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
guerler
parents:
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131 self.elapsed_time = self.latest_time-self.earliest_time
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guerler
parents:
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132 print('Elapsed Time: %d' % self.elapsed_time.seconds)
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guerler
parents:
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133 tput = 1.0 / ((self.elapsed_time.seconds/60.0) / self.num_files)
d30785e31577 "planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
guerler
parents:
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134 print('Throughput: %f transactions / minute' % tput)
d30785e31577 "planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
guerler
parents:
diff changeset
135