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annotate planemo/lib/python3.7/site-packages/ephemeris-0.10.6.dist-info/METADATA @ 1:56ad4e20f292 draft

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"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
author guerler
date Fri, 31 Jul 2020 00:32:28 -0400
parents d30785e31577
children
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1 Metadata-Version: 2.1
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2 Name: ephemeris
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3 Version: 0.10.6
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4 Summary: Ephemeris is an opinionated library and set of scripts for managing the bootstrapping of Galaxy project plugins - tools, index data, and workflows.
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5 Home-page: https://github.com/galaxyproject/ephemeris
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6 Author: Galaxy Project and Community
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7 Author-email: jmchilton@gmail.com
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8 License: AFL
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9 Keywords: galaxy
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10 Platform: UNKNOWN
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11 Classifier: Development Status :: 5 - Production/Stable
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12 Classifier: Intended Audience :: Developers
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13 Classifier: Environment :: Console
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14 Classifier: License :: OSI Approved :: Academic Free License (AFL)
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15 Classifier: Operating System :: POSIX
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16 Classifier: Topic :: Software Development
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17 Classifier: Topic :: Software Development :: Code Generators
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18 Classifier: Topic :: Software Development :: Testing
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19 Classifier: Natural Language :: English
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20 Classifier: Programming Language :: Python :: 2
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21 Classifier: Programming Language :: Python :: 2.7
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22 Requires-Dist: six (>=1.9.0)
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23 Requires-Dist: PyYAML
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24 Requires-Dist: bioblend (>=0.10.0)
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25 Requires-Dist: Jinja2
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26 Requires-Dist: galaxy-tool-util (>=20.5.0.dev1)
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27 Requires-Dist: galaxy-util (>=20.1.0.dev0)
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28 Requires-Dist: futures ; python_version < "3"
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29
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30
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31 .. image:: https://readthedocs.org/projects/pip/badge/?version=latest
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32 :target: https://ephemeris.readthedocs.org
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33
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34 .. image:: https://badge.fury.io/py/ephemeris.svg
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35 :target: https://pypi.python.org/pypi/ephemeris/
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36
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37 .. image:: https://travis-ci.org/galaxyproject/ephemeris.png?branch=master
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38 :target: https://travis-ci.org/galaxyproject/ephemeris
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39
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40 .. image:: https://api.codacy.com/project/badge/Coverage/e12102174b4e452c871cd2bafedaec60
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41 :target: https://www.codacy.com/app/galaxyproject/ephemeris?utm_source=github.com&utm_medium=referral&utm_content=galaxyproject/ephemeris&utm_campaign=Badge_Coverage
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42
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43 .. image:: https://api.codacy.com/project/badge/Grade/e12102174b4e452c871cd2bafedaec60
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44 :target: https://www.codacy.com/app/galaxyproject/ephemeris?utm_source=github.com&amp;utm_medium=referral&amp;utm_content=galaxyproject/ephemeris&amp;utm_campaign=Badge_Grade
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45
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46 Ephemeris is a small Python library and set of scripts for managing the
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47 bootstrapping of Galaxy_ plugins - tools, index data, and workflows.
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48
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49 * Free software: Academic Free License version 3.0
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50 * Documentation: https://ephemeris.readthedocs.org.
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51 * Code: https://github.com/galaxyproject/ephemeris
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52
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53
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54 .. _Galaxy: http://galaxyproject.org/
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55 .. _GitHub: https://github.com/
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56 .. _Docker: https://www.docker.com/
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57 .. _Homebrew: http://brew.sh/
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58 .. _linuxbrew: https://github.com/Homebrew/linuxbrew
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59 .. _Vagrant: https://www.vagrantup.com/
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60 .. _Travis CI: http://travis-ci.org/
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64
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65 History
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66 -------
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67
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68 .. to_doc
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69
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70 ---------------------
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71 0.10.6 (2020-05-04)
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72 ---------------------
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73
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74 * Wait for the correct repository (thanks to `@mvdbeek`_). `Pull
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75 Request 158`_
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76 * Update dependencies
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77
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78 ---------------------
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79 0.10.5 (2020-02-29)
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80 ---------------------
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81
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82 * Fix `shed-tools test -t workflow_tools.yml` (thanks to `@nsoranzo`_). `Pull
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83 Request 155`_
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84 * Fix installing tool dependencies from yaml list (thanks to `@mvdbeek`_).
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85 `Pull Request 154`_
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86 * Cast exceptions to string using unicodify (thanks to `@mvdbeek`_). `Pull
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87 Request 150`_
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88 * Add description when creating folders with setup_data_libraries (thanks to
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89 `@abretaud`_). `Pull Request 149`_
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90
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91 ---------------------
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92 0.10.4 (2019-10-05)
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93 ---------------------
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94
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95 * When polling for repo install status, ensure the correct revision is being
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96 checked (thanks to `@natefoo`_). `Pull Request 146`_
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97 * Add install_tool_deps command (thanks to `@innovate-invent`_). `Pull Request
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98 145`_
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99
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100 ---------------------
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101 0.10.3 (2019-07-18)
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102 ---------------------
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103
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104 * Add install-tool-deps command that will install tool dependencies
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105 (thanks to `@innovate-invent`_). `Pull Request 130`_
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106 * Require galaxy-tool-util instead of galaxy-lib (thanks to `@nsoranzo`_).
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107 `Pull Request 143`_
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108 * Release to PyPI on tag (thanks to `@mvdbeek`_). `Pull Request 142`_
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109 * Make Data library creation more robust
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110 (thanks to `@erasche`_). `Pull Request 138`_
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111 * Make tool testing more robust (thanks to
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112 `@mvdbeek`_). `Pull Request 137`_, `Pull Request 136`_
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113
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114 ---------------------
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115 0.10.2 (2019-06-04)
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116 ---------------------
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117
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118 * Fix default message check (thanks to `@mvdbeek`_). `Pull Request 135`_
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119
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120 ---------------------
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121 0.10.1 (2019-06-04)
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122 ---------------------
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123
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124 * Fix timeout handling when installing repositories
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125 (thanks to `@mvdbeek`_). `Pull Request 134`_
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126
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127 ---------------------
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128 0.10.0 (2019-05-29)
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129 ---------------------
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130
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131 * fix doc building and regenerate (thanks to `@martenson`_). `Pull Request
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132 129`_
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133 * fix default for 'parallel_tests' typo (thanks to `@martenson`_). `Pull
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134 Request 127`_
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135 * Include some additional stats for xunit reporting (thanks to `@mvdbeek`_).
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136 `Pull Request 126`_
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137 * Handle timeout gracefully for UWSGI connection (thanks to `@pcm32`_). `Pull
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138 Request 123`_
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139 * Update Docs for User Name (Should be Email) (thanks to `@rdvelazquez`_).
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140 `Pull Request 122`_
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141 * remove the python invocation from usage examples (thanks to `@martenson`_).
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142 `Pull Request 121`_
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143 * Fix crash when too_with_panel is empty (thanks to `@jvanbraekel`_). `Pull
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144 Request 120`_
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145 * Test tools in parallel, with regular user permissions, without a shared
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146 filesystem (thanks to `@mvdbeek`_). `Pull Request 118`_
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147 * use latest documentation dependencies to fix documentation build issue
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148 (thanks to `@rhpvorderman`_). `Pull Request 114`_
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149 * Refactor shed tool functionality. Removed deprecated options from
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150 shed-tools CLI.
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151 shed-tools update now also accepts tool list, so tools in galaxy can
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152 be selectively updated. Improved algorithm leads to much faster
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153 skipping of already installed tools, which makes the installation
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154 of tools much faster on an already populated galaxy.
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155 (thanks to `@rhpvorderman`_).
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156 `Pull Request 104`_
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157 * Add ``pytest``, enable coverage testing (thanks to `@rhpvorderman`_).
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158 `Pull Request 105`_
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159 * Make ``setup_data_libraries.py`` check for existence before recreation of
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160 libraries.
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161 (thanks to `@Slugger70`_).
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162 `Pull Request 103`_
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163 * Catch failures on requests to the installed repo list when doing post-
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164 timeout spinning on installation in ``shed-tools`` (thanks to `@natefoo`_).
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165 `Pull Request 97`_
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166 * Fix coverage reporting on codacy (thanks to `@rhpvorderman`_).
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167 `Pull Request 106`_
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168 * Run-data-managers now outputs stderr of failed jobs (thanks to `@rhpvorderman`_).
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169 `Pull Request 110`_
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170
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171 ---------------------
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172 0.9.0 (2018-05-23)
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173 ---------------------
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174
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175 * Update data managers when updating tools (thanks to `@rhpvorderman`_).
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176 `Pull Request 78`_, `Issue 69`_
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177 * Run data managers aggressive parallelization and refactoring (thanks to
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178 `@rhpvorderman`_).
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179 `Pull Request 79`_
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180 * Makes publishing of imported workflows available (thanks to `@pcm32`_).
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181 `Pull Request 74`_
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182 * Add option to test tools on update/install for Galaxy 18.05 (thanks to `@jmchilton`_).
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183 `Pull Request 81`_
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184 * Upload 2.0 support for data library creation (thanks to `@jmchilton`_).
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185 `Pull Request 89`_
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186 * Fixes to revision parsing in tools.yaml (thanks to `@bgruening`_).
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187 `Pull Request 70`_
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188 * Add Codacy monitoring and badge (thanks to `@jmchilton`_).
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189 `Pull Request 73`_
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190 * Fix typo in project organization document (thanks to `@blankenberg`_).
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191 `Pull Request 86`_
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192 * Fix hardcoded log paths (thanks to `@rhpvorderman`_).
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193 `Pull Request 85`_
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194 * Fix ``shed-tools`` update argparse handling (thanks to `@rhpvorderman`_).
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195 `Pull Request 88`_
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196 * Fix a few lint issues (thanks to `@jmchilton`_).
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197 `Pull Request 90`_
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198
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199 ---------------------
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200 0.8.0 (2017-12-29)
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201 ---------------------
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202
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203 * Many new documentation enhancements (thanks to @rhpvorderman, and others)
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204 * rename of shed-install to shed-tools and add a new --latest and --revision argument (thanks to @rhpvorderman)
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205 * many fixes and new tests by (thanks to @mvdbeek)
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206 * Parallelization of run-data-managers (thanks to @rhpvorderman)
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207 * run-data-managers now uses more advanced templating for less repetitive input yamls (thanks to @rhpvorderman)
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208 * run-data-managers now checks if a genome index is already present before running the data manager (thanks to @rhpvorderman)
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209 * ephemeris will now use https by default instead of http (thanks to @bgruening)
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210
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211 ---------------------
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212 0.7.0 (2017-06-27)
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213 ---------------------
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214
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215 * Many new documentation enhancements (thanks to @rhpvorderman, @erasche, and others) -
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216 docs are now published to https://readthedocs.org/projects/ephemeris/.
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217 * Fix problem with empty list options related to running data managers (thanks to @rhpvorderman).
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218 * Enable data managers to run with API keys (thanks to @rhpvorderman).
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219 * Add sleep command to wait for a Galaxy API to become available (thanks to @erasche).
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220 * Preserve readable order of keys while processing tool lists (thanks to @drosofff).
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221
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222 ---------------------
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223 0.6.1 (2017-04-17)
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224 ---------------------
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225
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226 * Add Python 2 and 3 testing for all scripts against galaxy-docker-stable along with various
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227 refactoring to reduce code duplication and Python 3 fixes. `#36
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228 <https://github.com/galaxyproject/ephemeris/pull/36>`__
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229
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230 ---------------------
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231 0.6.0 (2017-04-10)
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232 ---------------------
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233
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234 * Add new connection options for setting up data libraries.
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235
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236 ---------------------
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237 0.5.1 (2017-04-07)
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238 ---------------------
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239
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240 * Fix new ``run-data-managers`` CLI entrypoint.
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241
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242 ---------------------
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243 0.5.0 (2017-04-06)
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244 ---------------------
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245
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246 * Add ``run-data-managers`` tool to trigger DM with multiple values and in order. `#30 <https://github.com/galaxyproject/ephemeris/pull/30>`_
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247 * The workflow install tool now supports a directory of workflows. `#27 <https://github.com/galaxyproject/ephemeris/pull/27>`_
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248 * enable global options in a tool yaml files, like `install_resolver_dependencies: true` `#26 <https://github.com/galaxyproject/ephemeris/pull/26>`_
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249 * Mention mimum required galaxy versions. `#23 <https://github.com/galaxyproject/ephemeris/pull/23>`_ (thanks to @mvdbeek)
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250
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251
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252 ---------------------
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253 0.4.0 (2016-09-07)
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254 ---------------------
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255
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256 * Be more generic in determining a server time-out (thanks to @afgane).
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257 * Get tool list entrypoint and improvements (thanks to @mvdbeek).
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258 * Rename ``tool_panel_section_name`` to ``tool_panel_section_label`` like
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259 ansible-galaxy-tools (thanks to @nturaga).
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260 * Add missing file ``tool_list.yaml.sample`` (thanks to @nturaga).
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261
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262 ---------------------
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263 0.3.0 (2016-08-26)
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264 ---------------------
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265
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266 * More robust shed-install script, install dependencies by default, improve logging
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267 (thanks to @mvdbeek).
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268
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269 ---------------------
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270 0.2.0 (2016-08-15)
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271 ---------------------
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272
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273 * Add tool generate a tool list from a Galaxy workflow file
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274 (thanks to @drosofff).
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275 * Fix various code quality issues including adding beta support
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276 for Python 3 (thanks in part to @mvdbeek).
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277
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278 ---------------------
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279 0.1.0 (2016-06-15)
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280 ---------------------
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281
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282 * Setup project, pull in scripts from `ansible-galaxy-tools
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283 <https://github.com/galaxyproject/ansible-galaxy-tools>`__
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284 and adapt them for usage as a library.
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285
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286 .. github_links
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287 .. _Pull Request 158: https://github.com/galaxyproject/ephemeris/pull/158
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288 .. _Pull Request 155: https://github.com/galaxyproject/ephemeris/pull/155
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289 .. _Pull Request 154: https://github.com/galaxyproject/ephemeris/pull/154
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290 .. _Pull Request 150: https://github.com/galaxyproject/ephemeris/pull/150
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291 .. _Pull Request 149: https://github.com/galaxyproject/ephemeris/pull/149
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292 .. _Pull Request 146: https://github.com/galaxyproject/ephemeris/pull/146
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293 .. _Pull Request 145: https://github.com/galaxyproject/ephemeris/pull/145
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294 .. _Pull Request 130: https://github.com/galaxyproject/ephemeris/pull/130
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295 .. _Pull Request 143: https://github.com/galaxyproject/ephemeris/pull/143
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296 .. _Pull Request 142: https://github.com/galaxyproject/ephemeris/pull/142
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297 .. _Pull Request 138: https://github.com/galaxyproject/ephemeris/pull/138
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298 .. _Pull Request 137: https://github.com/galaxyproject/ephemeris/pull/137
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299 .. _Pull Request 136: https://github.com/galaxyproject/ephemeris/pull/136
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300 .. _Pull Request 135: https://github.com/galaxyproject/ephemeris/pull/135
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301 .. _Pull Request 134: https://github.com/galaxyproject/ephemeris/pull/134
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302 .. _Pull Request 129: https://github.com/galaxyproject/ephemeris/pull/129
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303 .. _Pull Request 127: https://github.com/galaxyproject/ephemeris/pull/127
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304 .. _Pull Request 126: https://github.com/galaxyproject/ephemeris/pull/126
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305 .. _Pull Request 123: https://github.com/galaxyproject/ephemeris/pull/123
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306 .. _Pull Request 122: https://github.com/galaxyproject/ephemeris/pull/122
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307 .. _Pull Request 121: https://github.com/galaxyproject/ephemeris/pull/121
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308 .. _Pull Request 120: https://github.com/galaxyproject/ephemeris/pull/120
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309 .. _Pull Request 118: https://github.com/galaxyproject/ephemeris/pull/118
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310 .. _Pull Request 114: https://github.com/galaxyproject/ephemeris/pull/114
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311 .. _Pull Request 97: https://github.com/galaxyproject/ephemeris/pull/97
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312 .. _Pull Request 103: https://github.com/galaxyproject/ephemeris/pull/103
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313 .. _Pull Request 104: https://github.com/galaxyproject/ephemeris/pull/104
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314 .. _Pull Request 105: https://github.com/galaxyproject/ephemeris/pull/105
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315 .. _Pull Request 106: https://github.com/galaxyproject/ephemeris/pull/106
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316 .. _Pull Request 110: https://github.com/galaxyproject/ephemeris/pull/110
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317 .. _Pull Request 74: https://github.com/galaxyproject/ephemeris/pull/74
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318 .. _Issue 69: https://github.com/galaxyproject/ephemeris/issues/69
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319 .. _Pull Request 73: https://github.com/galaxyproject/ephemeris/pull/73
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320 .. _Pull Request 78: https://github.com/galaxyproject/ephemeris/pull/78
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321 .. _Pull Request 70: https://github.com/galaxyproject/ephemeris/pull/70
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322 .. _Pull Request 86: https://github.com/galaxyproject/ephemeris/pull/86
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323 .. _Pull Request 79: https://github.com/galaxyproject/ephemeris/pull/79
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324 .. _Pull Request 85: https://github.com/galaxyproject/ephemeris/pull/85
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325 .. _Pull Request 81: https://github.com/galaxyproject/ephemeris/pull/81
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326 .. _Pull Request 90: https://github.com/galaxyproject/ephemeris/pull/90
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327 .. _Pull Request 89: https://github.com/galaxyproject/ephemeris/pull/89
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328 .. _Pull Request 88: https://github.com/galaxyproject/ephemeris/pull/88
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329 .. _@abretaud: https://github.com/abretaud
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330 .. _@bgruening: https://github.com/bgruening
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331 .. _@blankenberg: https://github.com/blankenberg
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332 .. _@rhpvorderman: https://github.com/rhpvorderman
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333 .. _@pcm32: https://github.com/pcm32
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334 .. _@jmchilton: https://github.com/jmchilton
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335 .. _@Slugger70: https://github.com/Slugger70
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336 .. _@natefoo: https://github.com/natefoo
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337 .. _@martenson: https://github.com/martenson
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338 .. _@mvdbeek: https://github.com/mvdbeek
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339 .. _@rdvelazquez: https://github.com/rdvelazquez
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340 .. _@jvanbraekel: https://github.com/jvanbraekel
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341 .. _@innovate-invent: https://github.com/innovate-invent
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342 .. _@erasche: https://github.com/erasche
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343 .. _@nsoranzo: https://github.com/nsoranzo
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344
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345 .. _bioblend: https://github.com/galaxyproject/bioblend/
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346 .. _nose: https://nose.readthedocs.org/en/latest/
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347
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348