Mercurial > repos > guerler > springsuite
annotate planemo/lib/python3.7/site-packages/galaxy/util/submodules.py @ 1:56ad4e20f292 draft
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author | guerler |
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date | Fri, 31 Jul 2020 00:32:28 -0400 |
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1 from __future__ import absolute_import |
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2 |
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3 import importlib |
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4 import logging |
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5 import pkgutil |
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6 |
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7 log = logging.getLogger(__name__) |
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8 |
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9 |
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10 def import_submodules(module, ordered=True, recursive=False): |
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11 """ Import all submodules of a module |
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12 |
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13 :param module: module (package name or actual module) |
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14 :type module: str | module |
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15 |
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16 :param ordered: Whether to order the returned modules. The default is True, and |
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17 modules are returned in reverse order to allow hierarchical overrides |
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18 i.e. 000_galaxy_rules.py, 100_site_rules.py, 200_instance_rules.py |
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19 :type ordered: bool |
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20 |
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21 :param recursive: Recursively returns all subpackages |
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22 :type recursive: bool |
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23 |
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24 :rtype: [module] |
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25 """ |
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26 sub_modules = __import_submodules_impl(module, recursive) |
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27 if ordered: |
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28 return sorted(sub_modules, reverse=True, key=lambda m: m.__name__) |
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29 else: |
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30 return sub_modules |
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31 |
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32 |
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33 def __import_submodules_impl(module, recursive=False): |
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34 """ Implementation of import only, without sorting. |
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35 |
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36 :param module: module (package name or actual module) |
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37 :type module: str | module |
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38 :rtype: [module] |
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39 """ |
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40 if isinstance(module, str): |
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41 module = importlib.import_module(module) |
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42 submodules = [] |
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43 for _, name, is_pkg in pkgutil.walk_packages(module.__path__): |
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44 full_name = module.__name__ + '.' + name |
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45 try: |
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46 submodule = importlib.import_module(full_name) |
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47 submodules.append(submodule) |
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48 if recursive and is_pkg: |
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49 submodules.update(__import_submodules_impl(submodule, recursive=True)) |
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50 except BaseException: |
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51 message = "%s dynamic module could not be loaded (traceback follows):" % (full_name) |
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52 log.exception(message) |
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53 continue |
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54 return submodules |