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comparison spring_package/Modeller.py @ 40:06337927c198 draft

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"planemo upload commit 68723d88e81923739538c34722bc9be164dd4646"
author guerler
date Sat, 23 Jan 2021 14:42:46 +0000
parents 172398348efd
children f316caf098a6
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39:172398348efd 40:06337927c198
29 alignment.createModel(chain) 29 alignment.createModel(chain)
30 template.saveChain(pdbChain, outputName) 30 template.saveChain(pdbChain, outputName)
31 try: 31 try:
32 subprocess.run(["pulchra", outputName], check=True) 32 subprocess.run(["pulchra", outputName], check=True)
33 except subprocess.CalledProcessError as e: 33 except subprocess.CalledProcessError as e:
34 raise Exception(str(e)) 34 print(str(e))
35 return False
35 return True 36 return True
36 37
37 38
38 def TMalign(fileA, fileB, tmName="temp/tmalign"): 39 def TMalign(fileA, fileB, tmName="temp/tmalign"):
39 try: 40 try: