Mercurial > repos > guerler > springsuite
comparison spring_roc.py @ 35:0bcc0a269916 draft
"planemo upload commit 0410e2fadc4e9fc1df6010de7b3678154cbdfe62-dirty"
| author | guerler |
|---|---|
| date | Tue, 24 Nov 2020 17:57:22 +0000 |
| parents | b300ddbbf9d0 |
| children |
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| 34:b300ddbbf9d0 | 35:0bcc0a269916 |
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| 282 | 282 |
| 283 if __name__ == "__main__": | 283 if __name__ == "__main__": |
| 284 parser = argparse.ArgumentParser(description='Create ROC plot.') | 284 parser = argparse.ArgumentParser(description='Create ROC plot.') |
| 285 parser.add_argument('-i', '--input', help='Input prediction file (2-columns).', required=True) | 285 parser.add_argument('-i', '--input', help='Input prediction file (2-columns).', required=True) |
| 286 parser.add_argument('-b', '--biogrid', help='BioGRID interaction database file', required=True) | 286 parser.add_argument('-b', '--biogrid', help='BioGRID interaction database file', required=True) |
| 287 parser.add_argument('-l', '--locations', help='UniProt export table with subcellular locations', default="", required=False) | 287 parser.add_argument('-l', '--locations', help='UniProt export table with subcellular locations', required=False) |
| 288 parser.add_argument('-r', '--regions', help='Comma-separated regions', required=False) | 288 parser.add_argument('-r', '--regions', help='Comma-separated subcellular locations', required=False) |
| 289 parser.add_argument('-n', '--negative', help='Negative set (2-columns)', default="", required=False) | 289 parser.add_argument('-n', '--negative', help='Negative set (2-columns)', required=False) |
| 290 parser.add_argument('-e', '--experiment', help='Type (physical/genetic)', default="", required=False) | 290 parser.add_argument('-e', '--experiment', help='Type (physical/genetic)', required=False) |
| 291 parser.add_argument('-t', '--throughput', help='Throughput (low/high)', default="", required=False) | 291 parser.add_argument('-t', '--throughput', help='Throughput (low/high)', required=False) |
| 292 parser.add_argument('-m', '--method', help='Method e.g. Two-hybrid', default="", required=False) | 292 parser.add_argument('-m', '--method', help='Method e.g. Two-hybrid', required=False) |
| 293 parser.add_argument('-o', '--output', help='Output (png)', required=True) | 293 parser.add_argument('-o', '--output', help='Output (png)', required=True) |
| 294 args = parser.parse_args() | 294 args = parser.parse_args() |
| 295 main(args) | 295 main(args) |