Mercurial > repos > guerler > springsuite
comparison spring_roc.xml @ 32:11b3fc8b5b48 draft
"planemo upload commit 90edad77d24453810d6792eaf54ae2ce2ee0913f-dirty"
| author | guerler |
|---|---|
| date | Tue, 24 Nov 2020 17:26:23 +0000 |
| parents | 3071750405c9 |
| children | f115fbf3ac63 |
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| 31:3071750405c9 | 32:11b3fc8b5b48 |
|---|---|
| 8 ]]></command> | 8 ]]></command> |
| 9 <inputs> | 9 <inputs> |
| 10 <param name="input" type="data" format="tabular" label="Interactions" help="Prediction Input Table with 2-columns containing UniProt Accession codes."/> | 10 <param name="input" type="data" format="tabular" label="Interactions" help="Prediction Input Table with 2-columns containing UniProt Accession codes."/> |
| 11 <param name="database" type="data" format="tabular" label="BioGRID Database" help="BioGRID Database in TAB 3.0 format."/> | 11 <param name="database" type="data" format="tabular" label="BioGRID Database" help="BioGRID Database in TAB 3.0 format."/> |
| 12 <conditional name="sampling"> | 12 <conditional name="sampling"> |
| 13 <param name="type" type="boolean" label="Use UniProt Localization" /> | 13 <param name="type" type="select" label="Non-interacting Pairs" display="radio" help="Decide how to retrieve non-interacting pairs."> |
| 14 <when value="true"> | 14 <option value="random">Random Sampling</option> |
| 15 <param name="locations" type="data" format="tabular" label="UniProt Localization" help="UniProt tabular export with localization column to sample non-interacting pairs." optional="True" /> | 15 <option value="uniprot">Sampling with UniProt Localization</option> |
| 16 </param> | |
| 17 <when value="uniprot"> | |
| 18 <param name="locations" type="data" format="tabular" label="UniProt Localization Database" help="UniProt tabular export with localization column to sample non-interacting pairs." optional="True" /> | |
| 16 <param name="regions" type="select" multiple="True" label="Choose Subcelluar Locations"> | 19 <param name="regions" type="select" multiple="True" label="Choose Subcelluar Locations"> |
| 17 <option value="Membrane" selected="True">Membrane</option> | 20 <option value="Membrane" selected="True">Membrane</option> |
| 18 <option value="Mitochondrion" selected="True">Mitochondrion</option> | 21 <option value="Mitochondrion" selected="True">Mitochondrion</option> |
| 19 <option value="Nucleus">Nucleus</option> | 22 <option value="Nucleus">Nucleus</option> |
| 20 <option value="Secreted">Secreted</option> | 23 <option value="Secreted">Secreted</option> |
| 21 </param> | 24 </param> |
| 22 </when> | 25 </when> |
| 23 <when value="false"> | 26 <when value="random"> |
| 24 <param name="locations" type="hidden" value="" /> | 27 <param name="locations" type="hidden" value="" /> |
| 25 <param name="regions" type="hidden" value="" /> | 28 <param name="regions" type="hidden" value="" /> |
| 26 </when> | 29 </when> |
| 27 </conditional> | 30 </conditional> |
| 28 <conditional name="experiment"> | 31 <conditional name="experiment"> |