Mercurial > repos > guerler > springsuite
comparison spring_minz.xml @ 7:2b9ed61195e2 draft
"planemo upload commit ab5e686c62d07a0d45216b474d435b855745222d-dirty"
| author | guerler |
|---|---|
| date | Sat, 01 Aug 2020 00:09:18 -0400 |
| parents | 323f11769abf |
| children | 4ac5d5a9b21c |
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| 6:323f11769abf | 7:2b9ed61195e2 |
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| 8 echo '${input.element_identifier}' >> 'input_list' && | 8 echo '${input.element_identifier}' >> 'input_list' && |
| 9 #end for | 9 #end for |
| 10 python3 '$__tool_directory__/spring_minz.py' -m '$minscore' -t '$target' -c '$crossreference' -o '$output' -l input_list -i inputs | 10 python3 '$__tool_directory__/spring_minz.py' -m '$minscore' -t '$target' -c '$crossreference' -o '$output' -l input_list -i inputs |
| 11 ]]></command> | 11 ]]></command> |
| 12 <inputs> | 12 <inputs> |
| 13 <param format="txt" name="target" type="data" label="Target Profile" help="Homology search results of query sequence `hhr`. (-t)"/> | 13 <param format="txt" name="target" type="data" label="Target Profile" help="Homology search result of target/query profile `hhr`."/> |
| 14 <param format="txt" name="inputs" type="data_collection" collection_type="list" label="Input Profiles" help="Homology search results of target sequences `hhr`. (-i)"/> | 14 <param format="txt" name="inputs" type="data_collection" collection_type="list" label="Input Profiles" help="Homology search results of input profiles `hhr`."/> |
| 15 <param format="txt" name="crossreference" type="data" label="Cross Reference" help="Cross reference of interacting proteins pairs. (-c)"/> | 15 <param format="txt" name="crossreference" type="data" label="Cross Reference" help="Cross reference of interacting proteins pairs from SPRING database protocol."/> |
| 16 <param name="minscore" type="integer" label="min-Z score threshold" value="10" min="1" max="100" help="Matching complex templates with a score lower than this threshold will be excluded. (-c)"/> | 16 <param name="minscore" type="integer" label="min-Z score threshold" value="10" min="1" max="100" help="Matching interaction pairs with a score lower than this threshold will be excluded."/> |
| 17 </inputs> | 17 </inputs> |
| 18 <outputs> | 18 <outputs> |
| 19 <data format="txt" name="output" /> | 19 <data format="txt" name="output" /> |
| 20 </outputs> | 20 </outputs> |
| 21 <tests> | 21 <tests> |