Mercurial > repos > guerler > springsuite

comparison spring_roc.xml @ 31:3071750405c9 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
"planemo upload commit b306c715d8284c097220bc5c8461399fdc05eac7-dirty"
author guerler
date Tue, 24 Nov 2020 17:12:07 +0000
parents b0e195a47df7
children 11b3fc8b5b48
comparison
equal deleted inserted replaced
30:b0e195a47df7 31:3071750405c9
2 <description>plot generator</description> 2 <description>plot generator</description>
3 <requirements> 3 <requirements>
4 <requirement type="package" version="3.3.3">matplotlib</requirement> 4 <requirement type="package" version="3.3.3">matplotlib</requirement>
5 </requirements> 5 </requirements>
6 <command detect_errors="exit_code"><![CDATA[ 6 <command detect_errors="exit_code"><![CDATA[
7 python3 '$__tool_directory__/spring_roc.py' -i '$input' -b '$database' -e '$experiment.type' -m '$experiment.method' -t '$throughput' -l '$locations' -o '$rocplot' 7 python3 '$__tool_directory__/spring_roc.py' -i '$input' -b '$database' -e '$experiment.type' -m '$experiment.method' -t '$throughput' -l '$sampling.locations' -r '$sampling.regions' -o '$rocplot'
8 ]]></command> 8 ]]></command>
9 <inputs> 9 <inputs>
10 <param format="tabular" name="input" type="data" label="Interactions" help="Prediction Input Table with 2-columns containing UniProt Accession codes."/> 10 <param name="input" type="data" format="tabular" label="Interactions" help="Prediction Input Table with 2-columns containing UniProt Accession codes."/>
11 <param format="tabular" name="database" type="data" label="BioGRID Database" help="BioGRID Database in TAB 3.0 format."/> 11 <param name="database" type="data" format="tabular" label="BioGRID Database" help="BioGRID Database in TAB 3.0 format."/>
12 <param format="tabular" name="locations" type="data" label="UniProt Localization" help="UniProt tabular export with localization column to sample non-interacting pairs." optional="True" /> 12 <conditional name="sampling">
13 <param name="type" type="boolean" label="Use UniProt Localization" />
14 <when value="true">
15 <param name="locations" type="data" format="tabular" label="UniProt Localization" help="UniProt tabular export with localization column to sample non-interacting pairs." optional="True" />
16 <param name="regions" type="select" multiple="True" label="Choose Subcelluar Locations">
17 <option value="Membrane" selected="True">Membrane</option>
18 <option value="Mitochondrion" selected="True">Mitochondrion</option>
19 <option value="Nucleus">Nucleus</option>
20 <option value="Secreted">Secreted</option>
21 </param>
22 </when>
23 <when value="false">
24 <param name="locations" type="hidden" value="" />
25 <param name="regions" type="hidden" value="" />
26 </when>
27 </conditional>
13 <conditional name="experiment"> 28 <conditional name="experiment">
14 <param name="type" type="select" label="Experimental Type" display="radio" help="Choose a specific experimental system type."> 29 <param name="type" type="select" label="Experimental Type" display="radio" help="Choose a specific experimental system type.">
15 <option value="">Any</option> 30 <option value="">Any</option>
16 <option value="physical">Physical</option> 31 <option value="physical">Physical</option>
17 <option value="genetic">Genetic</option> 32 <option value="genetic">Genetic</option>