Mercurial > repos > guerler > springsuite

comparison spring_cross.xml @ 38:80a4b98121b6 draft

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"planemo upload commit 22cd6b0fa88ce0ddc4052beab306f5ba10754f12"
author guerler
date Wed, 25 Nov 2020 17:38:24 +0000
parents 0be0af9e695d
children 172398348efd
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37:0be0af9e695d 38:80a4b98121b6
2 <description>reference builder</description> 2 <description>reference builder</description>
3 <command detect_errors="exit_code"><![CDATA[ 3 <command detect_errors="exit_code"><![CDATA[
4 python3 '$__tool_directory__/spring_cross.py' -l '$list' -i '$index' -d '$database' -o '$output' -g '$log' -t temp 4 python3 '$__tool_directory__/spring_cross.py' -l '$list' -i '$index' -d '$database' -o '$output' -g '$log' -t temp
5 ]]></command> 5 ]]></command>
6 <inputs> 6 <inputs>
7 <param format="tabular" name="list" type="data" label="PDB Chain Identifiers" help="List of PDB chains [PDB_CHAIN]."/> 7 <param format="tabular" name="list" type="data" label="PDB Chain Identifiers" help="List of PDB chains `PDB_CHAIN`."/>
8 <param format="tabular" name="index" type="data" label="PDB Database Index" help="Database Index file (ffindex)."/> 8 <param format="ffindex" name="index" type="data" label="PDB Database Index" help="Database Index file."/>
9 <param format="data" name="database" type="data" label="PDB Database" help="Database Data file (ffdata)."/> 9 <param format="ffdata" name="database" type="data" label="PDB Database" help="Database Data file."/>
10 </inputs> 10 </inputs>
11 <outputs> 11 <outputs>
12 <data format="tabular" name="output" label="SPRING Cross Reference"/> 12 <data format="tabular" name="output" label="SPRING Cross Reference"/>
13 <data format="txt" name="log" label="SPRING Cross Log"/> 13 <data format="txt" name="log" label="SPRING Cross Log"/>
14 </outputs> 14 </outputs>