Mercurial > repos > guerler > springsuite

comparison spring_model_line.py @ 17:c790d25086dc draft

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"planemo upload commit b0ede77caf410ab69043d33a44e190054024d340-dirty"
author guerler
date Wed, 28 Oct 2020 05:11:56 +0000
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16:16eb2acaaa20 17:c790d25086dc
1 #! /usr/bin/env python3
2 import argparse
3 import os
4
5 def main(args):
6 os.system("mkdir -p temp")
7 line = args.line.split()
8
9 os.system("./spring_model.py -ar ../../spring.db/covid_hhr/nsp13.fasta.txt -ac B -at ../../spring.db/files/6jyt.pdb -br ../../spring.db/human_hhr/sp\|P51530\|DNA2_HUMAN.fasta.txt -bc A -bt ../../spring.db/files/5ean.pdb -ts ../../spring.db/files/6jyt.pdb -tc B")
10
11 if __name__ == "__main__":
12 parser = argparse.ArgumentParser(description='Create a 3D model from HH-search results (from single line parameter).')
13 parser.add_argument('-l', '--line', help='Space separated single-line parameter (Query Target Z-min QueryTemplate TargetTemplate ComplexTemplate', required=True)
14 args = parser.parse_args()
15 main(args)
16