Mercurial > repos > guerler > springsuite

comparison planemo/lib/python3.7/site-packages/ephemeris-0.10.6.dist-info/METADATA @ 0:d30785e31577 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
author guerler
date Fri, 31 Jul 2020 00:18:57 -0400
parents
children
comparison
equal deleted inserted replaced
-1:000000000000 0:d30785e31577
1 Metadata-Version: 2.1
2 Name: ephemeris
3 Version: 0.10.6
4 Summary: Ephemeris is an opinionated library and set of scripts for managing the bootstrapping of Galaxy project plugins - tools, index data, and workflows.
5 Home-page: https://github.com/galaxyproject/ephemeris
6 Author: Galaxy Project and Community
7 Author-email: jmchilton@gmail.com
8 License: AFL
9 Keywords: galaxy
10 Platform: UNKNOWN
11 Classifier: Development Status :: 5 - Production/Stable
12 Classifier: Intended Audience :: Developers
13 Classifier: Environment :: Console
14 Classifier: License :: OSI Approved :: Academic Free License (AFL)
15 Classifier: Operating System :: POSIX
16 Classifier: Topic :: Software Development
17 Classifier: Topic :: Software Development :: Code Generators
18 Classifier: Topic :: Software Development :: Testing
19 Classifier: Natural Language :: English
20 Classifier: Programming Language :: Python :: 2
21 Classifier: Programming Language :: Python :: 2.7
22 Requires-Dist: six (>=1.9.0)
23 Requires-Dist: PyYAML
24 Requires-Dist: bioblend (>=0.10.0)
25 Requires-Dist: Jinja2
26 Requires-Dist: galaxy-tool-util (>=20.5.0.dev1)
27 Requires-Dist: galaxy-util (>=20.1.0.dev0)
28 Requires-Dist: futures ; python_version < "3"
29
30
31 .. image:: https://readthedocs.org/projects/pip/badge/?version=latest
32 :target: https://ephemeris.readthedocs.org
33
34 .. image:: https://badge.fury.io/py/ephemeris.svg
35 :target: https://pypi.python.org/pypi/ephemeris/
36
37 .. image:: https://travis-ci.org/galaxyproject/ephemeris.png?branch=master
38 :target: https://travis-ci.org/galaxyproject/ephemeris
39
40 .. image:: https://api.codacy.com/project/badge/Coverage/e12102174b4e452c871cd2bafedaec60
41 :target: https://www.codacy.com/app/galaxyproject/ephemeris?utm_source=github.com&utm_medium=referral&utm_content=galaxyproject/ephemeris&utm_campaign=Badge_Coverage
42
43 .. image:: https://api.codacy.com/project/badge/Grade/e12102174b4e452c871cd2bafedaec60
44 :target: https://www.codacy.com/app/galaxyproject/ephemeris?utm_source=github.com&amp;utm_medium=referral&amp;utm_content=galaxyproject/ephemeris&amp;utm_campaign=Badge_Grade
45
46 Ephemeris is a small Python library and set of scripts for managing the
47 bootstrapping of Galaxy_ plugins - tools, index data, and workflows.
48
49 * Free software: Academic Free License version 3.0
50 * Documentation: https://ephemeris.readthedocs.org.
51 * Code: https://github.com/galaxyproject/ephemeris
52
53
54 .. _Galaxy: http://galaxyproject.org/
55 .. _GitHub: https://github.com/
56 .. _Docker: https://www.docker.com/
57 .. _Homebrew: http://brew.sh/
58 .. _linuxbrew: https://github.com/Homebrew/linuxbrew
59 .. _Vagrant: https://www.vagrantup.com/
60 .. _Travis CI: http://travis-ci.org/
61
62
63
64
65 History
66 -------
67
68 .. to_doc
69
70 ---------------------
71 0.10.6 (2020-05-04)
72 ---------------------
73
74 * Wait for the correct repository (thanks to `@mvdbeek`_). `Pull
75 Request 158`_
76 * Update dependencies
77
78 ---------------------
79 0.10.5 (2020-02-29)
80 ---------------------
81
82 * Fix `shed-tools test -t workflow_tools.yml` (thanks to `@nsoranzo`_). `Pull
83 Request 155`_
84 * Fix installing tool dependencies from yaml list (thanks to `@mvdbeek`_).
85 `Pull Request 154`_
86 * Cast exceptions to string using unicodify (thanks to `@mvdbeek`_). `Pull
87 Request 150`_
88 * Add description when creating folders with setup_data_libraries (thanks to
89 `@abretaud`_). `Pull Request 149`_
90
91 ---------------------
92 0.10.4 (2019-10-05)
93 ---------------------
94
95 * When polling for repo install status, ensure the correct revision is being
96 checked (thanks to `@natefoo`_). `Pull Request 146`_
97 * Add install_tool_deps command (thanks to `@innovate-invent`_). `Pull Request
98 145`_
99
100 ---------------------
101 0.10.3 (2019-07-18)
102 ---------------------
103
104 * Add install-tool-deps command that will install tool dependencies
105 (thanks to `@innovate-invent`_). `Pull Request 130`_
106 * Require galaxy-tool-util instead of galaxy-lib (thanks to `@nsoranzo`_).
107 `Pull Request 143`_
108 * Release to PyPI on tag (thanks to `@mvdbeek`_). `Pull Request 142`_
109 * Make Data library creation more robust
110 (thanks to `@erasche`_). `Pull Request 138`_
111 * Make tool testing more robust (thanks to
112 `@mvdbeek`_). `Pull Request 137`_, `Pull Request 136`_
113
114 ---------------------
115 0.10.2 (2019-06-04)
116 ---------------------
117
118 * Fix default message check (thanks to `@mvdbeek`_). `Pull Request 135`_
119
120 ---------------------
121 0.10.1 (2019-06-04)
122 ---------------------
123
124 * Fix timeout handling when installing repositories
125 (thanks to `@mvdbeek`_). `Pull Request 134`_
126
127 ---------------------
128 0.10.0 (2019-05-29)
129 ---------------------
130
131 * fix doc building and regenerate (thanks to `@martenson`_). `Pull Request
132 129`_
133 * fix default for 'parallel_tests' typo (thanks to `@martenson`_). `Pull
134 Request 127`_
135 * Include some additional stats for xunit reporting (thanks to `@mvdbeek`_).
136 `Pull Request 126`_
137 * Handle timeout gracefully for UWSGI connection (thanks to `@pcm32`_). `Pull
138 Request 123`_
139 * Update Docs for User Name (Should be Email) (thanks to `@rdvelazquez`_).
140 `Pull Request 122`_
141 * remove the python invocation from usage examples (thanks to `@martenson`_).
142 `Pull Request 121`_
143 * Fix crash when too_with_panel is empty (thanks to `@jvanbraekel`_). `Pull
144 Request 120`_
145 * Test tools in parallel, with regular user permissions, without a shared
146 filesystem (thanks to `@mvdbeek`_). `Pull Request 118`_
147 * use latest documentation dependencies to fix documentation build issue
148 (thanks to `@rhpvorderman`_). `Pull Request 114`_
149 * Refactor shed tool functionality. Removed deprecated options from
150 shed-tools CLI.
151 shed-tools update now also accepts tool list, so tools in galaxy can
152 be selectively updated. Improved algorithm leads to much faster
153 skipping of already installed tools, which makes the installation
154 of tools much faster on an already populated galaxy.
155 (thanks to `@rhpvorderman`_).
156 `Pull Request 104`_
157 * Add ``pytest``, enable coverage testing (thanks to `@rhpvorderman`_).
158 `Pull Request 105`_
159 * Make ``setup_data_libraries.py`` check for existence before recreation of
160 libraries.
161 (thanks to `@Slugger70`_).
162 `Pull Request 103`_
163 * Catch failures on requests to the installed repo list when doing post-
164 timeout spinning on installation in ``shed-tools`` (thanks to `@natefoo`_).
165 `Pull Request 97`_
166 * Fix coverage reporting on codacy (thanks to `@rhpvorderman`_).
167 `Pull Request 106`_
168 * Run-data-managers now outputs stderr of failed jobs (thanks to `@rhpvorderman`_).
169 `Pull Request 110`_
170
171 ---------------------
172 0.9.0 (2018-05-23)
173 ---------------------
174
175 * Update data managers when updating tools (thanks to `@rhpvorderman`_).
176 `Pull Request 78`_, `Issue 69`_
177 * Run data managers aggressive parallelization and refactoring (thanks to
178 `@rhpvorderman`_).
179 `Pull Request 79`_
180 * Makes publishing of imported workflows available (thanks to `@pcm32`_).
181 `Pull Request 74`_
182 * Add option to test tools on update/install for Galaxy 18.05 (thanks to `@jmchilton`_).
183 `Pull Request 81`_
184 * Upload 2.0 support for data library creation (thanks to `@jmchilton`_).
185 `Pull Request 89`_
186 * Fixes to revision parsing in tools.yaml (thanks to `@bgruening`_).
187 `Pull Request 70`_
188 * Add Codacy monitoring and badge (thanks to `@jmchilton`_).
189 `Pull Request 73`_
190 * Fix typo in project organization document (thanks to `@blankenberg`_).
191 `Pull Request 86`_
192 * Fix hardcoded log paths (thanks to `@rhpvorderman`_).
193 `Pull Request 85`_
194 * Fix ``shed-tools`` update argparse handling (thanks to `@rhpvorderman`_).
195 `Pull Request 88`_
196 * Fix a few lint issues (thanks to `@jmchilton`_).
197 `Pull Request 90`_
198
199 ---------------------
200 0.8.0 (2017-12-29)
201 ---------------------
202
203 * Many new documentation enhancements (thanks to @rhpvorderman, and others)
204 * rename of shed-install to shed-tools and add a new --latest and --revision argument (thanks to @rhpvorderman)
205 * many fixes and new tests by (thanks to @mvdbeek)
206 * Parallelization of run-data-managers (thanks to @rhpvorderman)
207 * run-data-managers now uses more advanced templating for less repetitive input yamls (thanks to @rhpvorderman)
208 * run-data-managers now checks if a genome index is already present before running the data manager (thanks to @rhpvorderman)
209 * ephemeris will now use https by default instead of http (thanks to @bgruening)
210
211 ---------------------
212 0.7.0 (2017-06-27)
213 ---------------------
214
215 * Many new documentation enhancements (thanks to @rhpvorderman, @erasche, and others) -
216 docs are now published to https://readthedocs.org/projects/ephemeris/.
217 * Fix problem with empty list options related to running data managers (thanks to @rhpvorderman).
218 * Enable data managers to run with API keys (thanks to @rhpvorderman).
219 * Add sleep command to wait for a Galaxy API to become available (thanks to @erasche).
220 * Preserve readable order of keys while processing tool lists (thanks to @drosofff).
221
222 ---------------------
223 0.6.1 (2017-04-17)
224 ---------------------
225
226 * Add Python 2 and 3 testing for all scripts against galaxy-docker-stable along with various
227 refactoring to reduce code duplication and Python 3 fixes. `#36
228 <https://github.com/galaxyproject/ephemeris/pull/36>`__
229
230 ---------------------
231 0.6.0 (2017-04-10)
232 ---------------------
233
234 * Add new connection options for setting up data libraries.
235
236 ---------------------
237 0.5.1 (2017-04-07)
238 ---------------------
239
240 * Fix new ``run-data-managers`` CLI entrypoint.
241
242 ---------------------
243 0.5.0 (2017-04-06)
244 ---------------------
245
246 * Add ``run-data-managers`` tool to trigger DM with multiple values and in order. `#30 <https://github.com/galaxyproject/ephemeris/pull/30>`_
247 * The workflow install tool now supports a directory of workflows. `#27 <https://github.com/galaxyproject/ephemeris/pull/27>`_
248 * enable global options in a tool yaml files, like `install_resolver_dependencies: true` `#26 <https://github.com/galaxyproject/ephemeris/pull/26>`_
249 * Mention mimum required galaxy versions. `#23 <https://github.com/galaxyproject/ephemeris/pull/23>`_ (thanks to @mvdbeek)
250
251
252 ---------------------
253 0.4.0 (2016-09-07)
254 ---------------------
255
256 * Be more generic in determining a server time-out (thanks to @afgane).
257 * Get tool list entrypoint and improvements (thanks to @mvdbeek).
258 * Rename ``tool_panel_section_name`` to ``tool_panel_section_label`` like
259 ansible-galaxy-tools (thanks to @nturaga).
260 * Add missing file ``tool_list.yaml.sample`` (thanks to @nturaga).
261
262 ---------------------
263 0.3.0 (2016-08-26)
264 ---------------------
265
266 * More robust shed-install script, install dependencies by default, improve logging
267 (thanks to @mvdbeek).
268
269 ---------------------
270 0.2.0 (2016-08-15)
271 ---------------------
272
273 * Add tool generate a tool list from a Galaxy workflow file
274 (thanks to @drosofff).
275 * Fix various code quality issues including adding beta support
276 for Python 3 (thanks in part to @mvdbeek).
277
278 ---------------------
279 0.1.0 (2016-06-15)
280 ---------------------
281
282 * Setup project, pull in scripts from `ansible-galaxy-tools
283 <https://github.com/galaxyproject/ansible-galaxy-tools>`__
284 and adapt them for usage as a library.
285
286 .. github_links
287 .. _Pull Request 158: https://github.com/galaxyproject/ephemeris/pull/158
288 .. _Pull Request 155: https://github.com/galaxyproject/ephemeris/pull/155
289 .. _Pull Request 154: https://github.com/galaxyproject/ephemeris/pull/154
290 .. _Pull Request 150: https://github.com/galaxyproject/ephemeris/pull/150
291 .. _Pull Request 149: https://github.com/galaxyproject/ephemeris/pull/149
292 .. _Pull Request 146: https://github.com/galaxyproject/ephemeris/pull/146
293 .. _Pull Request 145: https://github.com/galaxyproject/ephemeris/pull/145
294 .. _Pull Request 130: https://github.com/galaxyproject/ephemeris/pull/130
295 .. _Pull Request 143: https://github.com/galaxyproject/ephemeris/pull/143
296 .. _Pull Request 142: https://github.com/galaxyproject/ephemeris/pull/142
297 .. _Pull Request 138: https://github.com/galaxyproject/ephemeris/pull/138
298 .. _Pull Request 137: https://github.com/galaxyproject/ephemeris/pull/137
299 .. _Pull Request 136: https://github.com/galaxyproject/ephemeris/pull/136
300 .. _Pull Request 135: https://github.com/galaxyproject/ephemeris/pull/135
301 .. _Pull Request 134: https://github.com/galaxyproject/ephemeris/pull/134
302 .. _Pull Request 129: https://github.com/galaxyproject/ephemeris/pull/129
303 .. _Pull Request 127: https://github.com/galaxyproject/ephemeris/pull/127
304 .. _Pull Request 126: https://github.com/galaxyproject/ephemeris/pull/126
305 .. _Pull Request 123: https://github.com/galaxyproject/ephemeris/pull/123
306 .. _Pull Request 122: https://github.com/galaxyproject/ephemeris/pull/122
307 .. _Pull Request 121: https://github.com/galaxyproject/ephemeris/pull/121
308 .. _Pull Request 120: https://github.com/galaxyproject/ephemeris/pull/120
309 .. _Pull Request 118: https://github.com/galaxyproject/ephemeris/pull/118
310 .. _Pull Request 114: https://github.com/galaxyproject/ephemeris/pull/114
311 .. _Pull Request 97: https://github.com/galaxyproject/ephemeris/pull/97
312 .. _Pull Request 103: https://github.com/galaxyproject/ephemeris/pull/103
313 .. _Pull Request 104: https://github.com/galaxyproject/ephemeris/pull/104
314 .. _Pull Request 105: https://github.com/galaxyproject/ephemeris/pull/105
315 .. _Pull Request 106: https://github.com/galaxyproject/ephemeris/pull/106
316 .. _Pull Request 110: https://github.com/galaxyproject/ephemeris/pull/110
317 .. _Pull Request 74: https://github.com/galaxyproject/ephemeris/pull/74
318 .. _Issue 69: https://github.com/galaxyproject/ephemeris/issues/69
319 .. _Pull Request 73: https://github.com/galaxyproject/ephemeris/pull/73
320 .. _Pull Request 78: https://github.com/galaxyproject/ephemeris/pull/78
321 .. _Pull Request 70: https://github.com/galaxyproject/ephemeris/pull/70
322 .. _Pull Request 86: https://github.com/galaxyproject/ephemeris/pull/86
323 .. _Pull Request 79: https://github.com/galaxyproject/ephemeris/pull/79
324 .. _Pull Request 85: https://github.com/galaxyproject/ephemeris/pull/85
325 .. _Pull Request 81: https://github.com/galaxyproject/ephemeris/pull/81
326 .. _Pull Request 90: https://github.com/galaxyproject/ephemeris/pull/90
327 .. _Pull Request 89: https://github.com/galaxyproject/ephemeris/pull/89
328 .. _Pull Request 88: https://github.com/galaxyproject/ephemeris/pull/88
329 .. _@abretaud: https://github.com/abretaud
330 .. _@bgruening: https://github.com/bgruening
331 .. _@blankenberg: https://github.com/blankenberg
332 .. _@rhpvorderman: https://github.com/rhpvorderman
333 .. _@pcm32: https://github.com/pcm32
334 .. _@jmchilton: https://github.com/jmchilton
335 .. _@Slugger70: https://github.com/Slugger70
336 .. _@natefoo: https://github.com/natefoo
337 .. _@martenson: https://github.com/martenson
338 .. _@mvdbeek: https://github.com/mvdbeek
339 .. _@rdvelazquez: https://github.com/rdvelazquez
340 .. _@jvanbraekel: https://github.com/jvanbraekel
341 .. _@innovate-invent: https://github.com/innovate-invent
342 .. _@erasche: https://github.com/erasche
343 .. _@nsoranzo: https://github.com/nsoranzo
344
345 .. _bioblend: https://github.com/galaxyproject/bioblend/
346 .. _nose: https://nose.readthedocs.org/en/latest/
347
348