--- a/spring_map.xml	Wed Nov 25 17:38:24 2020 +0000
+++ b/spring_map.xml	Fri Jan 22 15:50:27 2021 +0000
@@ -4,24 +4,25 @@
         <requirement type="package" version="2.10.1">blast</requirement>
     </requirements>
     <command detect_errors="exit_code"><![CDATA[
-        python3 '$__tool_directory__/spring_map.py' -l '$list' -i '$index' -d '$database' -c '$cross' -o '$output' -g '$log' -t temp
+        python3 '$__tool_directory__/spring_map.py' -l '$list' -i '$index' -d '$database' -c '$cross' -e $evalue -o '$output' -g '$log'
     ]]></command>
     <inputs>
         <param format="tabular" name="list" type="data" label="PDB Chain Identifiers" help="List of PDB chains `PDB_CHAIN`."/>
         <param format="ffindex" name="index" type="data" label="PDB Database Index" help="Database Index file."/>
         <param format="ffdata" name="database" type="data" label="PDB Database" help="Database Data file."/>
         <param format="tabular" name="cross" type="data" label="Cross Reference (unmapped)" help="Unmapped SPRING PDB Cross Reference as produced by SPRING Cross tool."/>
+        <param name="evalue" type="float" label="E-value Threshold" help="Specify an e-Value threshold to filter the alignment results" value="0.0" />
     </inputs>
     <outputs>
         <data format="tabular" name="output" label="SPRING Map Cross Reference"/>
         <data format="txt" name="log" label="SPRING Map Log"/>
     </outputs>
     <help><![CDATA[
-Creates a 3rd column for the SPRING cross reference containing the chain identifier of the binding partners homologue.
+Creates additional columns for the SPRING cross reference containing the chain identifier of the homologues from the template library.
     ]]></help>
     <tests>
         <test>
-            <param name="list" value="cross/chains.tabular" />
+            <param name="list" value="map/chains.tabular" />
             <param name="index" value="cross/pdb.ffindex" />
             <param name="database" value="cross/pdb.ffdata" />
             <param name="cross" value="cross/reference.tabular" />