Mercurial > repos > guerler > springsuite
diff planemo/lib/python3.7/site-packages/bioblend/_tests/GalaxyTestBase.py @ 0:d30785e31577 draft
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
author | guerler |
---|---|
date | Fri, 31 Jul 2020 00:18:57 -0400 |
parents | |
children |
line wrap: on
line diff
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/planemo/lib/python3.7/site-packages/bioblend/_tests/GalaxyTestBase.py Fri Jul 31 00:18:57 2020 -0400 @@ -0,0 +1,27 @@ +import os + +import bioblend +import bioblend.galaxy +from . import test_util +from .test_util import unittest + +bioblend.set_stream_logger('test', level='INFO') + +BIOBLEND_TEST_JOB_TIMEOUT = int(os.environ.get("BIOBLEND_TEST_JOB_TIMEOUT", "60")) + + +@test_util.skip_unless_galaxy() +class GalaxyTestBase(unittest.TestCase): + + def setUp(self): + galaxy_key = os.environ['BIOBLEND_GALAXY_API_KEY'] + galaxy_url = os.environ['BIOBLEND_GALAXY_URL'] + self.gi = bioblend.galaxy.GalaxyInstance(url=galaxy_url, key=galaxy_key) + + def _test_dataset(self, history_id, contents="1\t2\t3", **kwds): + tool_output = self.gi.tools.paste_content(contents, history_id, **kwds) + return tool_output["outputs"][0]["id"] + + def _wait_and_verify_dataset(self, dataset_id, expected_contents, timeout_seconds=BIOBLEND_TEST_JOB_TIMEOUT): + dataset_contents = self.gi.datasets.download_dataset(dataset_id, maxwait=timeout_seconds) + self.assertEqual(dataset_contents, expected_contents)