diff planemo/lib/python3.7/site-packages/bioblend/_tests/GalaxyTestBase.py @ 0:d30785e31577 draft

"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
author guerler
date Fri, 31 Jul 2020 00:18:57 -0400
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/planemo/lib/python3.7/site-packages/bioblend/_tests/GalaxyTestBase.py	Fri Jul 31 00:18:57 2020 -0400
@@ -0,0 +1,27 @@
+import os
+
+import bioblend
+import bioblend.galaxy
+from . import test_util
+from .test_util import unittest
+
+bioblend.set_stream_logger('test', level='INFO')
+
+BIOBLEND_TEST_JOB_TIMEOUT = int(os.environ.get("BIOBLEND_TEST_JOB_TIMEOUT", "60"))
+
+
+@test_util.skip_unless_galaxy()
+class GalaxyTestBase(unittest.TestCase):
+
+    def setUp(self):
+        galaxy_key = os.environ['BIOBLEND_GALAXY_API_KEY']
+        galaxy_url = os.environ['BIOBLEND_GALAXY_URL']
+        self.gi = bioblend.galaxy.GalaxyInstance(url=galaxy_url, key=galaxy_key)
+
+    def _test_dataset(self, history_id, contents="1\t2\t3", **kwds):
+        tool_output = self.gi.tools.paste_content(contents, history_id, **kwds)
+        return tool_output["outputs"][0]["id"]
+
+    def _wait_and_verify_dataset(self, dataset_id, expected_contents, timeout_seconds=BIOBLEND_TEST_JOB_TIMEOUT):
+        dataset_contents = self.gi.datasets.download_dataset(dataset_id, maxwait=timeout_seconds)
+        self.assertEqual(dataset_contents, expected_contents)