Mercurial > repos > guerler > springsuite
diff planemo/lib/python3.7/site-packages/cwltool/tests/test_parallel.py @ 0:d30785e31577 draft
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
author | guerler |
---|---|
date | Fri, 31 Jul 2020 00:18:57 -0400 |
parents | |
children |
line wrap: on
line diff
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/planemo/lib/python3.7/site-packages/cwltool/tests/test_parallel.py Fri Jul 31 00:18:57 2020 -0400 @@ -0,0 +1,31 @@ +import json + +from cwltool.context import RuntimeContext +from cwltool.executors import MultithreadedJobExecutor +from cwltool import load_tool + +from .util import get_data, get_windows_safe_factory, windows_needs_docker + + +@windows_needs_docker +def test_sequential_workflow(tmpdir): + test_file = "tests/wf/count-lines1-wf.cwl" + executor = MultithreadedJobExecutor() + runtime_context = RuntimeContext() + runtime_context.outdir = str(tmpdir) + runtime_context.select_resources = executor.select_resources + factory = get_windows_safe_factory( + executor=executor, runtime_context=runtime_context) + echo = factory.make(get_data(test_file)) + file_contents = {"class": "File", + "location": get_data("tests/wf/whale.txt")} + assert echo(file1=file_contents) == {"count_output": 16} + +@windows_needs_docker +def test_scattered_workflow(): + test_file = "tests/wf/scatter-wf4.cwl" + job_file = "tests/wf/scatter-job2.json" + factory = get_windows_safe_factory(executor=MultithreadedJobExecutor()) + echo = factory.make(get_data(test_file)) + with open(get_data(job_file)) as job: + assert echo(**json.load(job)) == {'out': ['foo one three', 'foo two four']}