view planemo/lib/python3.7/site-packages/galaxy/tool_util/linters/help.py @ 1:56ad4e20f292 draft

"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
author guerler
date Fri, 31 Jul 2020 00:32:28 -0400 (2020-07-31)
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"""This module contains a linting function for a tool's help."""
from galaxy.util import (
    rst_to_html,
    unicodify,
)


def lint_help(tool_xml, lint_ctx):
    """Ensure tool contains exactly one valid RST help block."""
    root = tool_xml.getroot()
    helps = root.findall("help")
    if len(helps) > 1:
        lint_ctx.error("More than one help section found, behavior undefined.")
        return

    if len(helps) == 0:
        lint_ctx.warn("No help section found, consider adding a help section to your tool.")
        return

    help = helps[0].text or ''
    if not help.strip():
        lint_ctx.warn("Help section appears to be empty.")
        return

    lint_ctx.valid("Tool contains help section.")
    invalid_rst = rst_invalid(help)

    if "TODO" in help:
        lint_ctx.warn("Help contains TODO text.")

    if invalid_rst:
        lint_ctx.warn("Invalid reStructuredText found in help - [%s]." % invalid_rst)
    else:
        lint_ctx.valid("Help contains valid reStructuredText.")


def rst_invalid(text):
    """Predicate to determine if text is invalid reStructuredText.

    Return False if the supplied text is valid reStructuredText or
    a string indicating the problem.
    """
    invalid_rst = False
    try:
        rst_to_html(text, error=True)
    except Exception as e:
        invalid_rst = unicodify(e)
    return invalid_rst