Mercurial > repos > guerler > springsuite
view planemo/lib/python3.7/site-packages/galaxy/util/ucsc.py @ 1:56ad4e20f292 draft
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
author | guerler |
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date | Fri, 31 Jul 2020 00:32:28 -0400 |
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""" Utilities for dealing with UCSC data. """ class UCSCLimitException(Exception): pass class UCSCOutWrapper(object): """File-like object that throws an exception if it encounters the UCSC limit error lines""" def __init__(self, other): self.other = iter(other) # Need one line of lookahead to be sure we are hitting the limit message self.lookahead = None def __iter__(self): return self def __next__(self): if self.lookahead is None: line = next(self.other) else: line = self.lookahead self.lookahead = None if line.startswith("----------"): next_line = next(self.other) if next_line.startswith("Reached output limit"): raise UCSCLimitException(next_line.strip()) else: self.lookahead = next_line return line def next(self): return self.__next__() def readline(self): return self.next()