view planemo/lib/python3.7/site-packages/networkx/algorithms/smetric.py @ 1:56ad4e20f292 draft

"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
author guerler
date Fri, 31 Jul 2020 00:32:28 -0400
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import networkx as nx
#from networkx.generators.smax import li_smax_graph


def s_metric(G, normalized=True):
    """Returns the s-metric of graph.

    The s-metric is defined as the sum of the products deg(u)*deg(v)
    for every edge (u,v) in G. If norm is provided construct the
    s-max graph and compute it's s_metric, and return the normalized
    s value

    Parameters
    ----------
    G    : graph
           The graph used to compute the s-metric.
    normalized : bool (optional)
           Normalize the value.

    Returns
    -------
    s : float
        The s-metric of the graph.

    References
    ----------
    .. [1] Lun Li, David Alderson, John C. Doyle, and Walter Willinger,
           Towards a Theory of Scale-Free Graphs:
           Definition, Properties, and  Implications (Extended Version), 2005.
           https://arxiv.org/abs/cond-mat/0501169
    """
    if normalized:
        raise nx.NetworkXError("Normalization not implemented")
#        Gmax = li_smax_graph(list(G.degree().values()))
#        return s_metric(G,normalized=False)/s_metric(Gmax,normalized=False)
#    else:
    return float(sum([G.degree(u) * G.degree(v) for (u, v) in G.edges()]))