Mercurial > repos > guerler > springsuite
view planemo/lib/python3.7/site-packages/prov/graph.py @ 1:56ad4e20f292 draft
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
author | guerler |
---|---|
date | Fri, 31 Jul 2020 00:32:28 -0400 |
parents | |
children |
line wrap: on
line source
from __future__ import (absolute_import, division, print_function, unicode_literals) import networkx as nx from prov.model import ( ProvDocument, ProvRecord, ProvElement, ProvEntity, ProvActivity, ProvAgent, ProvRelation, PROV_ATTR_ENTITY, PROV_ATTR_ACTIVITY, PROV_ATTR_AGENT, PROV_ATTR_TRIGGER, PROV_ATTR_GENERATED_ENTITY, PROV_ATTR_USED_ENTITY, PROV_ATTR_DELEGATE, PROV_ATTR_RESPONSIBLE, PROV_ATTR_SPECIFIC_ENTITY, PROV_ATTR_GENERAL_ENTITY, PROV_ATTR_ALTERNATE1, PROV_ATTR_ALTERNATE2, PROV_ATTR_COLLECTION, PROV_ATTR_INFORMED, PROV_ATTR_INFORMANT ) __author__ = 'Trung Dong Huynh' __email__ = 'trungdong@donggiang.com' INFERRED_ELEMENT_CLASS = { PROV_ATTR_ENTITY: ProvEntity, PROV_ATTR_ACTIVITY: ProvActivity, PROV_ATTR_AGENT: ProvAgent, PROV_ATTR_TRIGGER: ProvEntity, PROV_ATTR_GENERATED_ENTITY: ProvEntity, PROV_ATTR_USED_ENTITY: ProvEntity, PROV_ATTR_DELEGATE: ProvAgent, PROV_ATTR_RESPONSIBLE: ProvAgent, PROV_ATTR_SPECIFIC_ENTITY: ProvEntity, PROV_ATTR_GENERAL_ENTITY: ProvEntity, PROV_ATTR_ALTERNATE1: ProvEntity, PROV_ATTR_ALTERNATE2: ProvEntity, PROV_ATTR_COLLECTION: ProvEntity, PROV_ATTR_INFORMED: ProvActivity, PROV_ATTR_INFORMANT: ProvActivity } def prov_to_graph(prov_document): """ Convert a :class:`~prov.model.ProvDocument` to a `MultiDiGraph <https://networkx.readthedocs.io/en/stable/reference/classes.multigraph.html>`_ instance of the `NetworkX <https://networkx.github.io/>`_ library. :param prov_document: The :class:`~prov.model.ProvDocument` instance to convert. """ g = nx.MultiDiGraph() unified = prov_document.unified() node_map = dict() for element in unified.get_records(ProvElement): g.add_node(element) node_map[element.identifier] = element for relation in unified.get_records(ProvRelation): # taking the first two elements of a relation attr_pair_1, attr_pair_2 = relation.formal_attributes[:2] # only need the QualifiedName (i.e. the value of the attribute) qn1, qn2 = attr_pair_1[1], attr_pair_2[1] if qn1 and qn2: # only proceed if both ends of the relation exist try: if qn1 not in node_map: node_map[qn1] = \ INFERRED_ELEMENT_CLASS[attr_pair_1[0]](None, qn1) if qn2 not in node_map: node_map[qn2] = \ INFERRED_ELEMENT_CLASS[attr_pair_2[0]](None, qn2) except KeyError: # Unsupported attribute; cannot infer the type of the element continue # skipping this relation g.add_edge(node_map[qn1], node_map[qn2], relation=relation) return g def graph_to_prov(g): """ Convert a `MultiDiGraph <https://networkx.readthedocs.io/en/stable/reference/classes.multigraph.html>`_ that was previously produced by :func:`prov_to_graph` back to a :class:`~prov.model.ProvDocument`. :param g: The graph instance to convert. """ prov_doc = ProvDocument() for n in g.nodes_iter(): if isinstance(n, ProvRecord) and n.bundle is not None: prov_doc.add_record(n) for _, _, edge_data in g.edges_iter(data=True): try: relation = edge_data['relation'] if isinstance(relation, ProvRecord): prov_doc.add_record(relation) except KeyError: pass return prov_doc