Mercurial > repos > guerler > springsuite
view planemo/lib/python3.7/site-packages/rdflib/tools/rdfpipe.py @ 1:56ad4e20f292 draft
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
author | guerler |
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date | Fri, 31 Jul 2020 00:32:28 -0400 |
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#!/usr/bin/env python # -*- coding: UTF-8 -*- """ A commandline tool for parsing RDF in different formats and serializing the resulting graph to a chosen format. """ import sys from optparse import OptionParser import logging import rdflib from rdflib import plugin from rdflib.store import Store from rdflib.graph import ConjunctiveGraph from rdflib.namespace import RDF, RDFS, OWL, XSD from rdflib.parser import Parser from rdflib.serializer import Serializer from rdflib.util import guess_format from rdflib.py3compat import PY3 DEFAULT_INPUT_FORMAT = 'xml' DEFAULT_OUTPUT_FORMAT = 'n3' def parse_and_serialize(input_files, input_format, guess, outfile, output_format, ns_bindings, store_conn="", store_type=None): if store_type: store = plugin.get(store_type, Store)() store.open(store_conn) graph = ConjunctiveGraph(store) else: store = None graph = ConjunctiveGraph() for prefix, uri in list(ns_bindings.items()): graph.namespace_manager.bind(prefix, uri, override=False) for fpath in input_files: use_format, kws = _format_and_kws(input_format) if fpath == '-': fpath = sys.stdin elif not input_format and guess: use_format = guess_format(fpath) or DEFAULT_INPUT_FORMAT graph.parse(fpath, format=use_format, **kws) if outfile: output_format, kws = _format_and_kws(output_format) kws.setdefault('base', None) graph.serialize(destination=outfile, format=output_format, **kws) if store: store.rollback() def _format_and_kws(fmt): """ >>> _format_and_kws("fmt") ('fmt', {}) >>> _format_and_kws("fmt:+a") ('fmt', {'a': True}) >>> _format_and_kws("fmt:a") ('fmt', {'a': True}) >>> _format_and_kws("fmt:+a,-b") #doctest: +SKIP ('fmt', {'a': True, 'b': False}) >>> _format_and_kws("fmt:c=d") ('fmt', {'c': 'd'}) >>> _format_and_kws("fmt:a=b:c") ('fmt', {'a': 'b:c'}) """ fmt, kws = fmt, {} if fmt and ':' in fmt: fmt, kwrepr = fmt.split(':', 1) for kw in kwrepr.split(','): if '=' in kw: k, v = kw.split('=') kws[k] = v elif kw.startswith('-'): kws[kw[1:]] = False elif kw.startswith('+'): kws[kw[1:]] = True else: # same as "+" kws[kw] = True return fmt, kws def make_option_parser(): parser_names = _get_plugin_names(Parser) serializer_names = _get_plugin_names(Serializer) kw_example = "FORMAT:(+)KW1,-KW2,KW3=VALUE" oparser = OptionParser( "%prog [-h] [-i INPUT_FORMAT] [-o OUTPUT_FORMAT] " + "[--ns=PFX=NS ...] [-] [FILE ...]", description=__doc__.strip() + ( " Reads file system paths, URLs or from stdin if '-' is given." " The result is serialized to stdout."), version="%prog " + "(using rdflib %s)" % rdflib.__version__) oparser.add_option( '-i', '--input-format', type=str, # default=DEFAULT_INPUT_FORMAT, help="Format of the input document(s)." " Available input formats are: %s." % parser_names + " If no format is given, it will be " + "guessed from the file name extension." + " Keywords to parser can be given after format like: %s." % kw_example, metavar="INPUT_FORMAT") oparser.add_option( '-o', '--output-format', type=str, default=DEFAULT_OUTPUT_FORMAT, help="Format of the graph serialization." " Available output formats are: %s." % serializer_names + " Default format is: '%default'." + " Keywords to serializer can be given after format like: %s." % kw_example, metavar="OUTPUT_FORMAT") oparser.add_option( '--ns', action="append", type=str, help="Register a namespace binding (QName prefix to a base URI). " "This can be used more than once.", metavar="PREFIX=NAMESPACE") oparser.add_option( '--no-guess', dest='guess', action='store_false', default=True, help="Don't guess format based on file suffix.") oparser.add_option( '--no-out', action='store_true', default=False, help="Don't output the resulting graph " + "(useful for checking validity of input).") oparser.add_option( '-w', '--warn', action='store_true', default=False, help="Output warnings to stderr (by default only critical errors).") return oparser _get_plugin_names = lambda kind: ", ".join( p.name for p in plugin.plugins(kind=kind)) def main(): oparser = make_option_parser() opts, args = oparser.parse_args() if len(args) < 1: oparser.print_usage() oparser.exit() if opts.warn: loglevel = logging.WARNING else: loglevel = logging.CRITICAL logging.basicConfig(level=loglevel) ns_bindings = {} if opts.ns: for ns_kw in opts.ns: pfx, uri = ns_kw.split('=') ns_bindings[pfx] = uri outfile = sys.stdout if PY3: outfile = sys.stdout.buffer if opts.no_out: outfile = None parse_and_serialize(args, opts.input_format, opts.guess, outfile, opts.output_format, ns_bindings) if __name__ == "__main__": main()