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view planemo/lib/python3.7/site-packages/cwltool/tests/seqtk_seq.cwl @ 0:d30785e31577 draft

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"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
author guerler
date Fri, 31 Jul 2020 00:18:57 -0400
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#!/usr/bin/env cwl-runner
cwlVersion: v1.0
class: CommandLineTool
id: "seqtk_seq"
doc: "Convert to FASTA (seqtk)"
inputs:
  - id: input1
    type: File
    inputBinding:
      position: 1
      prefix: "-a"
outputs:
  - id: output1
    type: File
    outputBinding:
      glob: out
baseCommand: ["seqtk", "seq"]
arguments: []
stdout: out
hints:
  SoftwareRequirement:
    packages:
    - package: seqtk
      version:
      - r93