Mercurial > repos > guru-ananda > karyotype_plot

diff karyotype/tool_dependencies.xml @ 0:b1e0bf394aa9 draft

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Imported from capsule None
author devteam
date Thu, 22 Jan 2015 10:40:48 -0500
parents
children d3bfdb887090
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/karyotype/tool_dependencies.xml	Thu Jan 22 10:40:48 2015 -0500
@@ -0,0 +1,21 @@
+<?xml version="1.0"?>
+<tool_dependency>
+    <set_environment version="1.0">
+        <environment_variable name="R_SCRIPT_PATH" action="set_to">$REPOSITORY_INSTALL_DIR</environment_variable>
+    </set_environment>
+    <package name="R" version="2.15.0">
+        <install version="1.0">
+            <actions>
+                <action type="download_by_url">http://CRAN.R-project.org/src/base/R-2/R-2.15.0.tar.gz</action>
+                <action type="shell_command">./configure --prefix=$INSTALL_DIR</action>
+                <action type="shell_command">make</action>
+                <action type="set_environment">
+                    <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
+                </action>
+            </actions>
+        </install>
+        <readme>
+You need a FORTRAN compiler or perhaps f2c in addition to a C compiler to build R.
+        </readme>
+    </package>
+</tool_dependency>