# HG changeset patch
# User devteam
# Date 1422035302 18000
# Node ID 38f5cd46ffd34aa281e423f6d1c8c895d29a3905
# Parent  e090cf6dd3f5885ddf63ed952e283526f0d0cc5d
Uploaded updated tool definition.

diff -r e090cf6dd3f5 -r 38f5cd46ffd3 hmm/hmm.xml
--- a/hmm/hmm.xml	Thu Jan 22 10:40:18 2015 -0500
+++ b/hmm/hmm.xml	Fri Jan 23 12:48:22 2015 -0500
@@ -1,7 +1,11 @@
 <tool id="hmm_1" name="Fit HMM " version="1.0.0">
   <description>on numeric data</description>
-  <command interpreter="bash">\$R_SCRIPT_PATH/r_wrapper.sh $script_file</command>
-
+   <requirements>
+      <requirement type="set_environment">R_SCRIPT_PATH</requirement>
+      <requirement type="package" version="2.15.0">R</requirement>
+      <requirement type="package" version="1.5.0">RHmm</requirement>
+  </requirements>
+  <command interpreter="bash">r_wrapper.sh $script_file</command>
   <inputs>
     <param name="input" type="data" format="tabular" label="Dataset"/>
     <param name="var_cols" label="Select columns containing observations " type="data_column" data_ref="input" numerical="True" multiple="true" >
@@ -122,10 +126,6 @@
     <data format="input" name="out_file2" />
   </outputs>
 
-   <requirements>
-    	<requirement type="set_environment">R_SCRIPT_PATH</requirement>
-    	<requirement type="package" version="2.15.0">R</requirement>
-  </requirements>
   
 <help>
 
diff -r e090cf6dd3f5 -r 38f5cd46ffd3 hmm/tool_dependencies.xml
--- a/hmm/tool_dependencies.xml	Thu Jan 22 10:40:18 2015 -0500
+++ b/hmm/tool_dependencies.xml	Fri Jan 23 12:48:22 2015 -0500
@@ -6,4 +6,7 @@
     <package name="R" version="2.15.0">
       <repository changeset_revision="6c34eaa82fed" name="package_r_2_15_0" owner="devteam" toolshed="https://toolshed.g2.bx.psu.edu" />
     </package>
+    <package name="RHmm" version="1.5.0">
+        <repository changeset_revision="f3e7ca9e773c" name="package_rhmm_1_5_0" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
+    </package>
 </tool_dependency>