hammock: test-data/input.fa comparison

comparison test-data/input.fa @ 0:b1ac138f0287 draft

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author	hammock
date	Mon, 26 Jan 2015 06:24:21 -0500
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comparison

equal deleted inserted replaced

--1:000000000000
+:b1ac138f0287
+>5006
+WVTAPRSLPVLP
+>4863
+GSWVVDISNVED
+>4628
+NYSGNRPLPGIW
+>6642
+RSPIVRQLPSLP
+>5810
+RALPVMPTNGPM
+>4893
+AKSRPLPMVGLV
+>3919
+VRPLPSPEGFGQ
+>5831
+YRGRMLPVIWGT
+>4087
+RALPLPRAYEGI
+>6358
+VPLLPIRNGAVN
+>4358
+PVRVLPNIPLSV
+>6587
+SYVPGVPLRNLA
+>4003
+TRVLPNLPVNSQ
+>4836
+PGLPSRSVSFFN
+>3844
+RGLPQRPWHSLL
+>3889
+LAQRPLPLVTAW
+>5804
+AGQARTLPAIVV
+>5464
+LAQRPLPLIAAW
+>5401
+ARASPQVPLGRI
+>4319
+VSAIIPELPPRG
+>6327
+RYIPSLPLRNLH
+>4261
+LRYRTFPNLPEL
+>4429
+RALPIPNLYMLV
+>4066
+ARALPQVPSGRI
+>6375
+KAKFIRELPTVP
+>6631
+RWVLPELPMNGV
+>5215
+RKLPTTPNVMSV
+>5970
+LGPRNRALPIIQ
+>4094
+RGLPGIPQGIKL
+>6421
+SGTWALPVPLFG
+>4704
+IRIHDRNLPVVP
+>6578
+RTLPVLPTNGPM
+>5433
+YVRYALPDLPVE
+>4209
+PPAVPLRGIDLL
+>4784
+RLRPLPLPMVTL
+>6101
+RPLPVFPSEVTE
+>5554
+WWRTPPPKVPFL
+>4184
+LVAPAIPFRAVE
+>4676
+RGLPDRPGLGVL
+>3862
+WTANLFRPLPFV
+>4827
+GMHLAHRALPLI
+>4405
+RPLPSIPGLYHV
+>5671
+ASNLGRLLPPVV
+>5668
+FRPLPAPAYSFG
+>4304
+RFYPLLPERNIV
+>4180
+RALPEVSALSHV
+>4139
+NYSPMVPALNEL
+>5571
+GLRALPSFPLGS
+>4582
+SSALPTRPLAFV
+>5922
+SGFTRALPSIPP
+>6220
+YSYKTRGLPAVP
+>5105
+IWDRQLLMVPVN
+>5935
+GPPAVPLRDIVV
+>5097
+LMIPALPDWNWN
+>4422
+RIAPHLPLMNTW
+>6257
+RALPEIGNHQTS
+>3750
+RFERPLPVVGEV
+>5337
+RSLPAIYLSGDM
+>4649
+LSVRGLPSIPTQ
+>4873
+FLATRTLPVPYL
+>5745
+GIPVVPPRNAVV
+>6513
+TVLLANRGLPLV
+>6218
+RPLPVIFNGFSG
+>6207
+LRYRTVLNLPEL
+>6008
+SFRGLPSIPWGT
+>3641
+LRYRELPVTTTV
+>4128
+LSDIWRIGPNLM
+>5981
+MRVSASDLPLLP
+>4376
+FGGNGNRPLPWL
+>4243
+RGLPSIPTQIFY
+>4797
+SLAPPLPGMNFV
+>5238
+LKHRELPFIALD
+>6630
+QSRALPILPVSD
+>6335
+VSWVTRKPPFLP
+>4115
+SVPDVPQRNVIW
+>6048
+ERWRALPDIPVQ
+>6502
+LANRALPTTILW
+>4640
+RQLPRVPLFSDV
+>5225
+RWWRPLPELASS
+>6510
+RPLPVISASGFI
+>3648
+WDRFTRASPLVP
+>5748
+SHSAMRWLPALL
+>5578
+GQTDRWLPAVPY
+>5327
+NVLGRLLPNPGM
+>4342
+RSLPGPPDAFPW
+>3960
+YRALPVFPTMSE
+>5117
+TLAPVVPARNGL
+>3903
+QVSQDLPPLPYT
+>6290
+SVWARGLPVSDL
+>4849
+GYSYGQLPATPW
+>5592
+WFSARMLPYLPA
+>3738
+RGPALPLRVLLR
+>6381
+AHLRALPMPLGA
+>5625
+KAKLIREMPTVP
+>6239
+YASVPPVRNQLE
+>4933
+TDGGRSLPEVPW
+>3721
+GPGLRGLPSIPV
+>3935
+VMNGRRLPLLPG
+>5650
+ARKLPRLPFTQD
+>5224
+SRSALPLWDVYD
+>5129
+MPLLPIRNGTVN
+>4681
+LHQQRALPMAQG
+>4287
+LMVRALPSIIMH
+>5362
+KGPLPMIPVRLL
+>4481
+VRPLPSPEVFGR
+>4742
+WRSLPAIPTSEF
+>3969
+GTRALPLVLERF
+>4664
+IQSRLLPVSPVE
+>6113
+RARQLPMVPFSQ
+>5548
+LWLGRTLTSVPS
+>6024
+ASRRLPSRPVAV
+>4058
+EGRSLPAVPEFK
+>6085
+GSQWWKRALPAP
+>5488
+RPLPRVPGSNAL
+>4106
+RKLPAVPATEFN
+>6069
+GNWTKDLPQIVI
+>4176
+SWVPYLPSRNQL
+>5632
+RGPLPPIGVDMS
+>4560
+RALPSAPYNAPY
+>4076
+SRALLTRPLAFV
+>3832
+PNWLRPLPGLRE
+>4928
+RALPVPPGGSVY
+>6485
+PVGRQLPMIRHI
+>5150
+LRALPAAPYGAL
+>5077
+PSSRALPGMPSI
+>3779
+VPLPLPNASGYG
+>5724
+SSRRLPLVPTYE
+>3747
+NEQLFHRPLPAV
+>6060
+ARPPLPGYNKAM
+>5369
+LRYRTVPNLPAL
+>3880
+WTGLQYRILPTG
+>6468
+GAIPRFLPPIPH
+>4989
+LRSLPSVPRFGN
+>6192
+VTWRALPDVPAG
+>5417
+LYRALPMVYADA
+>6211
+VPWRALPEVPAG
+>5299
+LPELPSANFDWN
+>4978
+LRRRLPAIVELD
+>3775
+RALPIAPDSIFY
+>5690
+SRALPTRPLAFA
+>3780
+GRSLPSLPMGLF
+>4847
+LHTALPPLPSSM
+>5240
+TRVSARDLPLLP
+>4579
+IQSRDLPMVHPY
+>6074
+FRALPRVPVYVL
+>4783
+VRKLPKRPTVVI
+>5476
+SGNTRPLPALSL
+>4456
+SVARAMMALPGV
+>4132
+VRVRALPAAPSI
+>5152
+AMIHERPLPIVG
+>5564
+LLMQRPLPWEPV
+>5561
+RTVMISRPLPFP
+>4191
+RVLPDVPSMQRS
+>4945
+TRPLPSVIDVSM
+>3817
+RKLPPTHNVMSV
+>5354
+RGLPDRPGLGGL
+>3687
+RWLPSLPHNVPF
+>5450
+FGPALPARWGGV
+>4597
+LRSLPSVPWLGN
+>3839
+QIPSLPLRNQDT
+>6398
+RLPLKRPLPSLP
+>4590
+VGRAFRMLPDVT
+>5193
+FGPRNRALPIIQ
+>3761
+HAWWRPWTGVLV
+>6058
+GSWVVDISNVEE
+>6199
+LSVRGLPNIPSQ
+>3825
+TVFPGRPLPTPH
+>5976
+YAPVPPVRNQLK
+>6532
+VGWSRALPALPS
+>4500
+VPLLPTRNGTVN
+>5410
+LWLGRTFPSVPS
+>5301
+LAMRALPLINLF
+>4956
+RPLPSVPSAVGL
+>6458
+LAVRALPLINLL
+>6609
+SYRALPYAPTVI
+>5973
+RALPLLPRLAGV
+>5502
+PPPLPARFRIWT
+>4969
+RPLPELPERNFL
+>6529
+VRSLPGVPVFHS
+>4722
+GVTLLLPARNLY
+>4729
+RRPLPGLGYMML
+>4329
+RDLPPFPDAYIV
+>6077
+GRGLPNIPDVGV
+>4662
+RARMALPMPYAL
+>6033
+GPILPPFNSIRQ
+>6137
+LRIRESPLIEVS
+>3992
+LMVPAIPDWNWN
+>5856
+ARSWAQLPTLPI
+>4988
+GQSGRSLPSVPF
+>6098
+GGWRYRALPFTP
+>5313
+TMRHLPSLPSGE
+>4360
+YYNRRLPDFRVF
+>3823
+GIPRPLPDPWSV
+>3975
+GRPLPNPIGLAI
+>3937
+YAPMLPTRYVGE
+>3895
+TRPLPSVTDVSM
+>6337
+HALPVPPGDSVY
+>5874
+PPKLPDLNLGLN
+>4620
+TVPELPKRMQIT
+>3664
+PFRAPPLPERNI
+>6540
+NGPLGRALPFLP
+>4285
+YAGMANRALPSV
+>5066
+LMVPALPDLNWN
+>5530
+WYHGLPAVPMYN
+>5308
+RALPIAPWTSVS
+>5275
+LRWRKLPLFPDA
+>5904
+SPRLPLRAYHLL
+>3646
+IMIRALPVVPHG
+>4857
+RRPLPTVSVRLI
+>4828
+GLNVLRNLPTVP
+>4476
+SFWGTARLPSIP
+>6316
+RSAPNVPVWNTI
+>4394
+LMVRALPSIIMR
+>3731
+SLGQRTLPIIPV
+>4357
+YQGAPDVPVRVI
+>5796
+RLLPAFPSYGLE
+>4234
+LFRSRLPMIPYA
+>5801
+LGSAYRSLPVTP
+>4669
+VPLLPIRNGTGN
+>5287
+RALPVLPTKGAM
+>5173
+VPAWPMRLAPLY
+>5245
+LRILPSLPAYSS
+>5453
+SGRPLPIVGQFV
+>5121
+GYPNLPARNVYM
+>4735
+STLISRSLPKVP
+>4499
+RALPYHPLEESV
+>4299
+RARQLPLVPFSE
+>4145
+YSARTLPGIFHV
+>4767
+GLQPVLPPRNLV
+>5424
+LGLRNRALPIIQ
+>5218
+LAVFRTLPQVID
+>6295
+FSAPALPARSDW
+>6045
+GYPNLPARNLYL
+>3852
+PVRVLPNIPLNA
+>6556
+WNVWARMLPQLP
+>4558
+GSVPMLPLRAMS
+>3746
+GTRRLPSVPYFH
+>5919
+WALPEVPFMQLS
+>4536
+SWKRTGLPDLPV
+>4979
+LRYRTVPDLPEL
+>5895
+VSVPLLPNYNTS
+>5716
+MTGHGYLPMLPW
+>5373
+RALPVPPGESVY
+>3950
+LWLGRALPSVPS
+>4320
+RGVPFLPPRLWY
+>4262
+RSLPVAPPGASV
+>3764
+GMKNRSLPLVPL
+>4231
+VRRKSLPEVPYV
+>6189
+TRRLPLVPSVEN
+>6108
+RPLPSLGGLYQV
+>4712
+FRALPELPWSAV
+>4997
+RVSLPARNAYML
+>4683
+FGPLPPIPGNAP
+>4777
+TIFNSRSLPIVV
+>4117
+GGYERALPSIQM
+>6498
+FGRVFNRTLPLV
+>5960
+RALPVLVEQFSL
+>4606
+SWLGRTLPSVPS
+>6507
+GVARAMMALPGV
+>5581
+RTRDLPVLPHHQ
+>4991
+WSRALPIIGAGT
+>3875
+RALPGPPGDSVY
+>6416
+GPILPKREWVSV
+>3659
+SRALPFIPDVGK
+>6269
+LRVRPLPSAPTV
+>3962
+GARVLPAPPINT
+>5984
+WVRPLPELHMIG
+>4043
+SRALPTRPLGFV
+>5588
+RLLPDTPWFYLS
+>4433
+RPLPTPLNSGWA
+>4292
+HLASRSLPDYWI
+>5964
+FPQLPARYSAIV
+>5019
+GRALPTIPDWVG
+>4245
+LRVRSLPVIQRL
+>6493
+VPWHALPDVPAG
+>5539
+RKLPPTPNVTSV
+>3672
+IQSKLLPVSPVE
+>4310
+RALPVLSTNGPM
+>5045
+PGLPLRNVSFFN
+>6225
+TWHRPLPYLPLS
+>4924
+VAWLPNLPVQNV
+>3941
+APLLPIRNGTVN
+>6481
+TFRWPLPMIEKV
+>5846
+FPVRALPSIVDW
+>4839
+QGSRDLPPLPYT
+>4374
+RALPKIKNEVSH
+>6598
+GFSMRPLPRVDL
+>5826
+WPGARRLPGLPW
+>4790
+PRPALPLWDVYD
+>6453
+NYSGNRPLPVIW
+>6067
+VWYGSLPRIPNV
+>6241
+MRVSARDLPLRP
+>4110
+LRSGALPAIPVL
+>6323
+RPLPVLEPPEYN
+>6209
+RALPFIPWYEDN
+>6080
+PRRHLPVLPAES
+>5235
+RARQLPTVPFSE
+>6544
+RALPVVPYSGDI
+>5133
+SMRSLPDLPRGV
+>6311
+QAEPALPVRIAM
+>6205
+APTLPARMYVGS
+>4804
+RLSLVMRSLPSV
+>4498
+RALSVPPGDSVY
+>4331
+LRYRELPITTTI
+>4158
+AYLATQPLPLVP
+>5388
+WEYTVRPLPSIS
+>6602
+VLPKLPGRLLVY
+>6393
+SRALPTRPLAYV
+>5949
+RDQAPELPYWNH
+>3705
+RGLPLLPTMGGM
+>4016
+RWLPEIPVNMGN
+>3917
+LAWRRLPDIVSQ
+>6433
+LRPPVPAANWRY
+>5695
+SRALPFIPDVGE
+>4022
+SSLPWVPHENIE
+>4228
+GLNALRNLPIVP
+>6155
+LARRELPFLPYL
+>6387
+RWVTRPLPNLET
+>5865
+FLFRSLPDAPYG
+>3759
+RALPLPGVWMSE
+>6171
+QVSRNLPPLPYT
+>4221
+DLYAPRGLPFLP
+>5643
+RFATDLLPEIPK
+>5608
+MSGISLPNIPMI
+>3924
+SGLIRWLPAIPG
+>5130
+SLVPDLPSRLLH
+>5684
+LVPEVPMRYLMS
+>6261
+LRYRELPVTTSI
+>6243
+ADLRWRKLPVFW
+>3670
+RRLPNPLLYVSE
+>6227
+RAALPARTVGIL
+>4557
+WDPPAVPSRLMI
+>4788
+LRYRTVPSLPEL
+>4909
+RSLPHVPAELVV
+>4384
+GAGRSLPGVPYV
+>5335
+NPPALPDRIGDV
+>4431
+SSRAPLPVRNAL
+>6351
+LRALPAVTYGAL
+>5902
+RGLPKLPVEVMW
+>4761
+FVPPLPARNNFI
+>5630
+RALPLRPSMGHQ
+>3786
+LETWRALPVIPG
+>4580
+ARALPQVPLSRI
+>5213
+SRYLSSVPERNY
+>6158
+FPILPSRTMAAV
+>6551
+FHRPLPNTDWSA
+>6012
+GPTLPLRQYDII
+>3955
+LARIDRPLPSIV
+>5367
+MRVSARDLPLLQ
+>4875
+RVGRLLPVLLGV
+>5227
+VLVDVAPPLPVR
+>5954
+RSLPGLPDAFPW
+>4730
+RYLPSPPQYKIE
+>4438
+RPLPVINAVRLF
+>4196
+PEWAYELPAWLS
+>3987
+SARHLPAPPVAY
+>5441
+RKLPPTPNVMSV
+>5208
+WGRFTRALPLVP
+>5209
+LAPLLPLRDSFT
+>4463
+RSERRLPAIPGL
+>4830
+GLGRRTLPIIPV
+>3912
+PGLPSRNVSFFN
+>6637
+LRGLPSVPLEWI
+>6300
+SVRSLPRIPSFS
+>5765
+NLMLRYRPLPFV
+>4619
+LLLPPRNVVHIV
+>5281
+PWSRYQRPLPVV
+>6118
+VRHRPLPNFVSL
+>5708
+GFRVLPQVPMSL
+>6349
+RRLPEIPAQKDQ
+>5606
+GRQLPSAPLFHL
+>4674
+YGGRLLPDRPNF
+>4387
+LMVPALPDWNWN
+>3757
+LAQHPLPLITAW
+>6619
+GRSLPVPTSEFT
+>5070
+PLGRRPLTALGL
+>6383
+RALPGTPIAMGG
+>4092
+SSFGPSLPVRWL
+>5466
+VLLLPIRNGTVN
+>5119
+TVPELSKRMQIT
+>4861
+RSFPTLPARNAM
+>6309
+RLWRALPQLPNV
+>6644
+YARYALPDLPVE
+>5322
+HFERVLPGVPMN
+>4005
+RAPAPGPRALVL
+>6407
+LRKLPIVPELLV
+>4626
+RPLPSLGGLYQA
+>6151
+VPWRALPNVPAG
+>5885
+LVRRELPSLPYL
+>4166
+LRTRSLPAVVSM
+>5654
+GPLWSRMLPMVD
+>6235
+GLGKRTLPIIPV
+>5619
+FPPVPYRSELTL
+>4577
+PPGLPQRSFVAV
+>4960
+RLERDLPMLPLN
+>4899
+LWLGRTRPSVPS
+>5612
+YRTVPLPVPTTL
+>6111
+MLNGGRARMLIP
+>5436
+LPELPSANFVWN
+>5678
+RELPPTPNVMSV
+>6299
+RPLPSIMLSSIW
+>4207
+RPSLPMRYHSVE
+>4089
+AVPTIPQRNYVL
+>4808
+LRYRTVPILPEL
+>6127
+DRALPAFPASGV
+>3930
+RLVTYRALTLIM
+>3864
+WMAVGRSLPIIP
+>3773
+RYPELPLRDYRV
+>5025
+AFMYRGLPVVPG
+>3678
+RALPVLPSIQNH
+>6051
+WKRLPVLPPQMV
+>5063
+GSFGPSLPVRWV
+>6571
+GSWVVDISNVEN
+>4078
+RGYERALPSIPM
+>6467
+RKLPSIVLASWG
+>4990
+NYRSLPSAPEVN
+>5157
+NLMLRYRPLPSV
+>4589
+GPLLPVRSADLL
+>4942
+VPWRALPDVPPG
+>4070
+VRYRPLPSFVSL
+>4492
+SILDLPERNMSY
+>4984
+GARVLPAPPIST
+>3728
+LGPRIRALQIIQ
+>5562
+VNLVDLPTRNVV
+>3777
+MVLKWRALPIVE
+>5663
+RPLPLHPVYYLT
+>3756
+GRPLLPVRNLGI
+>5280
+SIYGGLSSLPDV
+>3680
+LVRRWLPMLPSV
+>3768
+WRALPLSSLENV
+>5095
+LTVSRPLPSMFV
+>4781
+PWARSLPERPES
+>4716
+RRLPLIPGGMLI
+>5637
+KRPLPMWPNHLL
+>5726
+NLMLRYRPLPFD
+>3797
+AHVRGSRFVRRV
+>6056
+IQMFALPAVVGV
+>4179
+AFAGPPILPARI
+>3815
+LPYLPERAVSYL
+>6062
+RPLPIINAVRLF
+>5736
+GPGQRTLPIIPV
+>5110
+RVRMLPEIVKDI
+>4510
+GYYVRNLPVISV
+>3710
+RSRALPILPVSD
+>5573
+APRVSMRGYEAN
+>3877
+SRALPTRALAFV
+>4976
+FRALPRVPIYVL
+>5478
+LMYHGNALPPWL
+>6144
+RLNVLRNLPIVP
+>4014
+AGRALPDLLWVS
+>4803
+FLRFRELHGFSV
+>6249
+NLHRALPGGEYL
+>4947
+LVWVKRPLPVLL
+>4108
+APAFPSRNIVLK
+>4364
+LVDIQSFPLPRV
+>5008
+RGPDLPARYASL
+>4631
+RYGHRPLPEVRN
+>4659
+PFFGRTLPVIGG
+>5697
+ELSPPVPTRYYM
+>6495
+GPALPARTVGIL
+>6558
+GRGLPNIPDVGE
+>5390
+LAVPTRPSLPWT
+>5260
+MRVSGRDLPLLP
+>3643
+LGPRNRALPIIR
+>5325
+LSHHFGVEYRGL
+>6329
+VVRKLPVITEYS
+>3718
+LQNRGLPLVGRM
+>3834
+GPALPARWSSNM
+>5491
+WVVRPLPVVGAF
+>4959
+RNERFLPLIPGI
+>4931
+PRGGVIVSSPNW
+>6340
+VPWRVLPDVPAG
+>5627
+GSYRGPPDVPHV
+>5451
+LVRRELPFPPYL
+>3701
+PVRVLPNFPLNV
+>4650
+RPLQSLGGLYQV
+>5860
+GRGLPPVPGLGS
+>4278
+FPVVPPRNLMGL
+>4817
+RALPIPNLYKPV
+>4745
+PVRVLPNITLNV
+>4143
+GGSPELPKRNVW
+>5837
+WWRTPLPKVPFM
+>5862
+GPRLPTWNFVEL
+>4396
+GSWVVDISNFED
+>6002
+RPLPNLPQQPKL
+>4068
+GSWVVDISNVKD
+>6429
+VMFPSLPTYNNY
+>6325
+KPLLPARSSSML
+>5094
+YWAWGHGFMNLS
+>6595
+RPELPQANFGWS
+>4212
+VPWRALPDVPAG
+>6451
+IMIRALHVVPHG
+>5990
+RVLPYLPYGIDE
+>4821
+WVHQLRPLPLPV
+>4296
+LQNHGLPLVGGM
+>4982
+FRPAIPARDIMW
+>4794
+GPMLPVWNSVGS
+>6505
+APIVPARVMALA
+>6030
+RLSFRVLPEVHW
+>5969
+PVRVLPNIPLDV
+>6082
+RARVLPFIPEMS
+>5808
+MRTRSLPLISVI
+>6302
+LGAGRRLPEVVF
+>4232
+LAVWVRPLPVIV
+>4568
+VRRELPGVPESY
+>4534
+RRLPPAPHNTVV
+>5166
+RKLPAVPATELN
+>6297
+MVRGLPALPGVN
+>4168
+WTGLRYRILPTV
+>3744
+SGNGPTRHMLSG
+>6411
+LSVRGLPNIPTQ
+>3854
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+GKPGLPLRPVVL
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+>4876
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+VMSKVPGTWVNA
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+LRVRSLPVIQML
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+APRPLPYLNQYS
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+KNTVQSRMLPLL
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+LRFRSLPHWPVL
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+FRPLLPPRLEGL
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+RSLPEFPASMKV
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+GSWVVDISNAED
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+RGPDLPARYESL
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+RVLPVVPDRWSH
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+RALPMIVLDGEF
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+LMVRALPSIITQ
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+WRSLPAIPTYEF
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+LRFRSLPRWLVL
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+NELLFHRPLPAV
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+GLYAPRGLPLLP
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+GLHRPLPMPAGL
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+RRPLPGLGYMIL
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+LVHLGPVIPERN
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+LPLPPRNVVHIG
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+RVPPVLPSVNQW
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+WRPLPDIIVKHY
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+SRYLPSAPERNY
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+LQNRSLPLVGGM
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+VRWRGLPATLGV
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+RALPVPPGDSAY
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+IERALPLVPGER
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+LELRPLPGLPLV
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+TPGPVLPEWNAL
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+YRWRMLPVIWGT
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+LRPPVPAANWHR
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+VPWRALPDEPAG
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+YPALPPRLGLAL
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+VRNLPLLPSRLM
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+HLRPSLPALNDM
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+LRYRILPSVNGV
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+WRALPTLPKAST
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+RWLTEIPVNMGN
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+RVLPVLPATYGV
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+EYPNLPARNVYL
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+VAYRRLPLVNLL
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+YGTRTLPRVILD
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+LRYRELPVTTTT
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+RALPSVPYNAPY
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+TPPLPDRTKVLS
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+RAGPMLPDRSLY
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+AGLPLVPLRNLL
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+FSWRPLPGTQAV
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+TLPSLPSRNKLV
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+TDRDLPLLPDTF
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+RWMSPPALPARE
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+LRMRSLPVIQML
+>5104
+WASRGLPEIPTG
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+RGLQYRALPLLI
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+RLLPGIPTAIVM
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+FGRWRSLIPGPL
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+SRLLPNAPFQMD
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+ISGPPLPQRSYL
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+PALPMRNAAIAL
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+RWGILPSIPLPS
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+VMVPSLPTYNNY
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+RRWRPLPVPHAL
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+LARPLPALNMVR
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+RALPTILVEEFR
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+RARSLPLPPSLI
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+SRALPTRTLAFV
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+PLLPGRNSAMVG
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+GMHPAHRALPLT
+>5463
+NYRSLLSAPEVN
+>6641
+VKMRLPARNVYA
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+LSVRGLRNIPTQ
+>5182
+RAGWLPALPLPA
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+RGPGLPFPNVVM
+>4009
+RPLPVLSFDSTE
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+GPRVPDRILVGY
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+TLVPVVPARNGL
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+LWLGRTLPSVPN
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+GHRLPLVPTRAI
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+VRYRPLLNFVSL
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+PMLWLPDLPDRP
+>5901
+AMIHERPLPIAG
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+SRPIVPERNTYV
+>4703
+TWRDLPPTPSFV
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+VTRPLPQLIVVD
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+GVMMRALPFIHT
+>6306
+SGSTRALPSIPQ
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+TVRIPPLPEYNL
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+SRGLPSVPSIVG
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+SRVLPTRPLAFV
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+GANGILRSTIVF
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+PAVRLLPEVPWH
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+RLLPSPNVQYIE
+>5587
+LLYRELPVTTTI
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+RALPLIPSMSVG
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+RRPLPVILYDHK
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+SWRKLPAIPPGS
+>4635
+TFRRPLPMVEKV
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+SNKGRSLPQIFH
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+IWDLQLPMVPVN
+>5226
+FRPLPQLTTEIR
+>6539
+RLLPMPPGTVHK
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+GPELPSRTVYTD
+>4127
+RALPVISILSGE
+>4311
+RAPPVMPGAVGS
+>6156
+MQVSARDLPLLP
+>4892
+MTRPLPTPWYGN
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+HRWRPLPVPHAS
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+TNRDLPLLPDMF
+>4643
+LRYRELPVATTI
+>6359
+PRTRALPLILYT
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+MTGHGDLPMLPW
+>5932
+RGHPLPVVIAGE
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+NQVRLLPWVPGS
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+RTANLFRPLPFV
+>5665
+RPLPLIGLQSMQ
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+QVSWDLPPLPYT
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+MRALPGTPPGLG
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+TSLLAWRMLPTP
+>6350
+VAPALPWKNGLG
+>3737
+YGAGRLLPPLPW
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+RKPPPTPNVMSV
+>4406
+ALVYSRALPVIP
+>4303
+WVRPLPELYMIG
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+FSGLPRALPEDP
+>4648
+LRIRELPLIEVS
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+VRHGVLPSVPGS
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+RGLPDVPMGLSG
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+HARQLPMVPFSE
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+MRYRALPAISIE
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+VRGALHRPLPFV
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+NRKLPGVPWMSL
+>4105
+RSLPWIPMEGFD
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+YRWRPLPVPHAL
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+QVTKVRSLPELP
+>4288
+SFLQSRPMPEVL
+>6557
+RALPGLPSMGQL
+>4814
+RLLPGIPTAMVM
+>5128
+FGRWRSLIPVPL
+>5789
+RALPDVPPYSGV
+>6334
+RLVPPTPMLNDL
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+YAIYKLGLPDVP
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+LRYRELPVTTNI
+>6611
+GGQHRRLPLVVI
+>4277
+GSWLLYRALPAL
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+VPWRALPGVPAG
+>4743
+SYLARPLPSPYA
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+LRFRELPYYGSL
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+HRWRPLPVPHDL
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+TFRRPLPMIEKV
+>4870
+VFSNRVLPKLPW
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+RWVLPELPMSGV
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+LGMISRGFADRD
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+SPLLPPRAWAGL
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+LFLSRRLPPIPT
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+FLKNRPLPVAWF
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+SIYGGLPSLPDV
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+THRPLPRIYNAE
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+RAQFGRELPRVV
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+RLHPGIPTAMVM
+>4934
+SWAPYLPSRSQL
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+GPLLPVRSVDLL
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+QRMWFLPAVPGL
+>5747
+MHRPAIPIRNSW
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+DLRPRLPARWMI
+>5203
+GRPSLPPRVLAG
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+FGGPMLPSWNVF
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+HGPLPEIPVMEE
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+GTTGFRALPLVP
+>3686
+FEVMRLLPSVPG
+>4511
+LANRALPAFVSR
+>6252
+PLDRALPIPGAV
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+TAPVVRALPKIW
+>5248
+SWKRLPEVSYEY
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+WGNWGMRALPLI
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+GYLRNRELPVIG
+>6061
+RARMALPMLYAL
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+LRFLPTVPTSGS
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+GPPVPDRLGVWL
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+LAVRALPLINLF
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+VPLLPIRNGTVS
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+LSVGRGLPALPT
+>6059
+KAKLIRELPMVP
+>5286
+QALPDVPPYSGV
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+RVASRLLPLIPA
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+KVLPMIPSVELL
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+RPLPNAPSYSAS
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+RPLPVPDSVVLI
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+WAPLLPYRGTDE
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+GRAPNVPTRLFF
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+VSRALPVPSLAG
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+PALPIRGVYQVV
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+RRVRPLPPIYDL
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+HVVGRALPMVPY
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+YNRNLGRELPIL
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+DELVRNLPSVPW
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+SRPLPLPRVLSY
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+APALPTRFLRDL
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+FHRPLPNIDWST
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+LVWNRELPRIVM
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+YRRPLPSFVQSI
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+RVLPVLPSVNQW
+>4782
+SGTRALPVPLYG
+>3723
+SRYRTVPNLPEL
+>4544
+RLSRGRMPIPLF
+>6147
+YSVRMLPQGPNS
+>3892
+REGLPPIPVGEV
+>4932
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Mercurial > repos > hammock > hammock

comparison test-data/input.fa @ 0:b1ac138f0287 draft